Strain Fitness in Sphingobium sp. HT1-2 around GFF3630

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,678,238	+		GFF3629	0.29	+0.3
3,678,245	+		GFF3629	0.29	-1.3
3,678,278	+		GFF3629	0.32	-0.5
3,678,278	+		GFF3629	0.32	-0.3
3,678,278	+		GFF3629	0.32	+0.4
3,678,284	-		GFF3629	0.32	-0.2
3,678,286	+		GFF3629	0.32	+1.7
3,678,286	-		GFF3629	0.32	+0.5
3,678,286	-		GFF3629	0.32	-0.1
3,678,286	-		GFF3629	0.32	-0.3
3,678,286	-		GFF3629	0.32	+0.0
3,678,320	+		GFF3629	0.35	-0.1
3,678,320	-		GFF3629	0.35	-0.4
3,678,321	+		GFF3629	0.35	+1.1
3,678,372	+		GFF3629	0.39	+0.1
3,678,372	+		GFF3629	0.39	+0.1
3,678,390	-		GFF3629	0.41	+2.1
3,678,404	-		GFF3629	0.42	-0.4
3,678,415	+		GFF3629	0.43	-0.2
3,678,423	-		GFF3629	0.43	+0.4
3,678,428	-		GFF3629	0.44	+0.4
3,678,442	+		GFF3629	0.45	-0.1
3,678,445	-		GFF3629	0.45	-3.2
3,678,452	+		GFF3629	0.46	-2.1
3,678,460	-		GFF3629	0.46	+0.5
3,678,477	-		GFF3629	0.48	-2.0
3,678,481	+		GFF3629	0.48	-0.2
3,678,481	+		GFF3629	0.48	-0.2
3,678,489	-		GFF3629	0.48	-0.0
3,678,489	-		GFF3629	0.48	+0.2
3,678,489	-		GFF3629	0.48	+0.5
3,678,490	+		GFF3629	0.49	-1.5
3,678,490	+		GFF3629	0.49	+1.1
3,678,498	-		GFF3629	0.49	-2.0
3,678,500	+		GFF3629	0.49	-0.7
3,678,505	+		GFF3629	0.50	+0.5
3,678,508	-		GFF3629	0.50	+0.9
3,678,508	-		GFF3629	0.50	+1.7
3,678,510	+		GFF3629	0.50	+0.8
3,678,513	-		GFF3629	0.50	-2.3
3,678,513	-		GFF3629	0.50	+0.5
3,678,540	+		GFF3629	0.52	+1.0
3,678,540	+		GFF3629	0.52	+1.5
3,678,547	-		GFF3629	0.53	-1.3
3,678,547	-		GFF3629	0.53	+0.1
3,678,573	+		GFF3629	0.55	-0.4
3,678,603	-		GFF3629	0.57	+0.2
3,678,605	+		GFF3629	0.58	+1.6
3,678,613	-		GFF3629	0.58	+0.0
3,678,621	+		GFF3629	0.59	+0.3
3,678,630	+		GFF3629	0.60	-1.0
3,678,634	-		GFF3629	0.60	-0.6
3,678,634	-		GFF3629	0.60	-1.0
3,678,644	-		GFF3629	0.61	+0.6
3,678,701	-		GFF3629	0.65	-0.9
3,678,745	-		GFF3629	0.69	-1.7
3,678,784	+		GFF3629	0.72	-0.7
3,678,792	+		GFF3629	0.72	-0.4
3,678,799	+		GFF3629	0.73	+0.1
3,678,800	-		GFF3629	0.73	-0.3
3,678,817	-		GFF3629	0.74	+0.3
3,678,843	+		GFF3629	0.76	+0.2
3,678,868	-		GFF3629	0.78	-0.5
3,678,869	+		GFF3629	0.79	-0.2
3,678,872	-		GFF3629	0.79	+0.5
3,678,911	-		GFF3629	0.82	+2.2
3,678,989	+		GFF3629	0.88	-0.7
3,679,010	+		GFF3629	0.90	-0.6
3,679,012	+		GFF3629	0.90	-1.3
3,679,012	+		GFF3629	0.90	+1.3
3,679,017	+				-0.6
3,679,018	-				+0.2
3,679,025	-				-0.2
3,679,030	-				-0.2
3,679,037	-				+0.2
3,679,055	+				-2.3
3,679,063	-				+1.3
3,679,087	-				-0.1
3,679,094	-				+0.8
3,679,109	+				-0.6
3,679,109	+				-0.3
3,679,109	+				+0.9
3,679,109	+				-2.2
3,679,112	-				-0.1
3,679,117	-				+0.5
3,679,127	-				-0.0
3,679,127	-				+0.4
3,679,134	+				-0.5
3,679,135	+				+0.9
3,679,162	+				+0.3
3,679,162	-				-0.4
3,679,162	-				-2.7
3,679,163	+				-1.4
3,679,163	-				+1.9
3,679,194	-				-2.0
3,679,207	-		GFF3630	0.12	-0.9
3,679,207	-		GFF3630	0.12	-1.3
3,679,207	-		GFF3630	0.12	-0.4
3,679,346	-		GFF3630	0.34	-0.1
3,679,373	-		GFF3630	0.39	-1.0
3,679,382	-		GFF3630	0.40	-0.1
3,679,389	+		GFF3630	0.41	-0.5
3,679,392	-		GFF3630	0.42	-0.9
3,679,445	-		GFF3630	0.50	-0.5
3,679,456	+		GFF3630	0.52	-0.4
3,679,489	+		GFF3630	0.57	+1.0
3,679,491	-		GFF3630	0.58	-2.3
3,679,509	+		GFF3630	0.61	+0.5
3,679,509	+		GFF3630	0.61	+1.4
3,679,509	+		GFF3630	0.61	+2.1
3,679,511	+		GFF3630	0.61	-0.1
3,679,517	-		GFF3630	0.62	-1.8
3,679,517	-		GFF3630	0.62	-0.1
3,679,527	-		GFF3630	0.64	+2.2
3,679,563	+		GFF3630	0.69	+0.1
3,679,585	-		GFF3630	0.73	-1.1
3,679,624	+		GFF3630	0.79	-0.1
3,679,624	-		GFF3630	0.79	-0.2
3,679,624	-		GFF3630	0.79	-0.3
3,679,632	-		GFF3630	0.81	-1.4
3,679,632	-		GFF3630	0.81	-1.1
3,679,675	+		GFF3630	0.88	-1.8
3,679,679	+		GFF3630	0.88	-1.7
3,679,679	+		GFF3630	0.88	+0.6
3,679,683	-		GFF3630	0.89	+0.2
3,679,713	-				-0.9
3,679,720	-				-1.1
3,679,757	+				+0.2
3,679,805	-				-0.2
3,679,871	+		GFF3631	0.16	+0.1
3,679,877	+		GFF3631	0.16	-0.1
3,679,884	+		GFF3631	0.17	-0.9
3,679,884	+		GFF3631	0.17	+0.2
3,679,884	+		GFF3631	0.17	-0.2
3,679,958	+		GFF3631	0.27	-1.6
3,679,958	-		GFF3631	0.27	-1.0
3,679,960	-		GFF3631	0.27	+0.3
3,680,001	+		GFF3631	0.32	+1.1
3,680,009	-		GFF3631	0.33	+0.0
3,680,019	-		GFF3631	0.34	+0.3
3,680,076	-		GFF3631	0.42	+2.0
3,680,090	+		GFF3631	0.43	+0.1
3,680,093	-		GFF3631	0.44	-0.6
3,680,095	+		GFF3631	0.44	-0.8
3,680,095	+		GFF3631	0.44	-1.3
3,680,103	-		GFF3631	0.45	-0.2
3,680,103	-		GFF3631	0.45	-0.6
3,680,103	-		GFF3631	0.45	+0.8
3,680,103	-		GFF3631	0.45	-0.4
3,680,103	-		GFF3631	0.45	+2.4
3,680,120	+		GFF3631	0.47	+0.8
3,680,120	+		GFF3631	0.47	-0.2
3,680,128	-		GFF3631	0.48	+0.1
3,680,128	-		GFF3631	0.48	+0.2
3,680,128	-		GFF3631	0.48	-0.4
3,680,128	-		GFF3631	0.48	-0.6
3,680,157	+		GFF3631	0.52	-1.7
3,680,171	-		GFF3631	0.54	-0.4
3,680,176	-		GFF3631	0.54	-0.2
3,680,191	-		GFF3631	0.56	-0.5
3,680,258	+		GFF3631	0.65	+0.1
3,680,259	-		GFF3631	0.65	-0.7
3,680,275	-		GFF3631	0.67	-1.7
3,680,298	+		GFF3631	0.70	+2.0
3,680,298	+		GFF3631	0.70	+1.4
3,680,298	+		GFF3631	0.70	-1.6
3,680,298	+		GFF3631	0.70	-0.4
3,680,298	+		GFF3631	0.70	-0.7
3,680,298	+		GFF3631	0.70	+0.7
3,680,298	+		GFF3631	0.70	-0.7
3,680,300	+		GFF3631	0.70	+0.3
3,680,300	+		GFF3631	0.70	+0.8
3,680,308	-		GFF3631	0.71	-0.4
3,680,326	-		GFF3631	0.73	-0.1
3,680,331	-		GFF3631	0.74	+0.2
3,680,331	-		GFF3631	0.74	+2.6
3,680,354	-		GFF3631	0.77	-0.8
3,680,361	-		GFF3631	0.78	+0.2
3,680,371	-		GFF3631	0.79	-1.5
3,680,372	-		GFF3631	0.79	+1.3
3,680,374	+		GFF3631	0.79	+0.3
3,680,382	-		GFF3631	0.80	+0.8
3,680,382	-		GFF3631	0.80	+0.3
3,680,420	-		GFF3631	0.85	-0.4
3,680,491	-				+0.3
3,680,496	+				+0.9
3,680,496	-				+0.9
3,680,547	-				-0.9
3,680,549	+				-0.6
3,680,554	+				-0.9
3,680,557	-				-0.8
3,680,557	-				-0.3
3,680,588	-				-0.5
3,680,597	-				+0.9
3,680,602	-				-1.1
3,680,602	-				-0.8
3,680,611	-				-1.0
3,680,616	-				+1.3
3,680,626	+		GFF3632	0.10	+0.8
3,680,633	-		GFF3632	0.11	-0.0
3,680,634	-		GFF3632	0.11	-1.5
3,680,639	-		GFF3632	0.12	+0.8
3,680,641	-		GFF3632	0.12	+0.1
3,680,693	+		GFF3632	0.19	-0.5
3,680,710	+		GFF3632	0.21	-2.0
3,680,710	+		GFF3632	0.21	-0.9
3,680,715	+		GFF3632	0.21	-0.4
3,680,720	+		GFF3632	0.22	+1.2
3,680,723	-		GFF3632	0.22	-1.4
3,680,725	+		GFF3632	0.22	-0.7
3,680,741	+		GFF3632	0.24	-1.0