Strain Fitness in Sphingobium sp. HT1-2 around GFF3558

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,602,359	+		GFF3557	0.30	-0.2
3,602,367	-		GFF3557	0.31	-1.4
3,602,367	-		GFF3557	0.31	+0.9
3,602,371	+		GFF3557	0.31	-1.8
3,602,371	+		GFF3557	0.31	-1.1
3,602,379	-		GFF3557	0.32	-0.2
3,602,379	-		GFF3557	0.32	-1.6
3,602,386	-		GFF3557	0.32	-0.2
3,602,390	+		GFF3557	0.32	+0.1
3,602,447	+		GFF3557	0.36	+0.3
3,602,452	+		GFF3557	0.37	-0.0
3,602,455	-		GFF3557	0.37	-1.6
3,602,455	-		GFF3557	0.37	-1.8
3,602,483	+		GFF3557	0.39	-1.0
3,602,492	+		GFF3557	0.39	-0.1
3,602,591	-		GFF3557	0.46	-2.1
3,602,621	+		GFF3557	0.48	+0.8
3,602,624	-		GFF3557	0.49	+0.5
3,602,635	+		GFF3557	0.49	-2.7
3,602,637	+		GFF3557	0.50	+0.8
3,602,652	+		GFF3557	0.51	+1.2
3,602,653	-		GFF3557	0.51	-1.2
3,602,660	-		GFF3557	0.51	-0.8
3,602,662	+		GFF3557	0.51	+0.2
3,602,662	+		GFF3557	0.51	-1.1
3,602,663	+		GFF3557	0.51	+0.4
3,602,671	-		GFF3557	0.52	-0.7
3,602,671	-		GFF3557	0.52	-0.6
3,602,671	-		GFF3557	0.52	-1.9
3,602,671	-		GFF3557	0.52	-0.3
3,602,673	+		GFF3557	0.52	-1.5
3,602,673	+		GFF3557	0.52	-0.7
3,602,676	-		GFF3557	0.52	-2.2
3,602,678	+		GFF3557	0.52	-0.5
3,602,678	+		GFF3557	0.52	-0.7
3,602,681	-		GFF3557	0.53	-1.6
3,602,681	-		GFF3557	0.53	+0.9
3,602,686	-		GFF3557	0.53	-0.1
3,602,686	-		GFF3557	0.53	+0.5
3,602,692	+		GFF3557	0.53	-2.4
3,602,742	+		GFF3557	0.57	-0.1
3,602,755	-		GFF3557	0.58	+0.3
3,602,790	+		GFF3557	0.60	+0.3
3,602,790	+		GFF3557	0.60	+0.5
3,602,790	+		GFF3557	0.60	-2.3
3,602,804	+		GFF3557	0.61	-0.9
3,602,816	+		GFF3557	0.62	+0.1
3,602,816	+		GFF3557	0.62	-1.8
3,602,824	-		GFF3557	0.63	-1.9
3,602,836	-		GFF3557	0.63	+0.7
3,602,838	+		GFF3557	0.64	-1.4
3,602,846	-		GFF3557	0.64	-0.8
3,602,851	+		GFF3557	0.65	+1.4
3,602,852	-		GFF3557	0.65	+1.0
3,602,861	+		GFF3557	0.65	+0.1
3,602,868	-		GFF3557	0.66	-1.3
3,602,869	-		GFF3557	0.66	+1.0
3,602,876	+		GFF3557	0.66	+0.1
3,602,884	+		GFF3557	0.67	+0.3
3,602,885	+		GFF3557	0.67	+0.6
3,602,891	-		GFF3557	0.67	+1.6
3,602,892	-		GFF3557	0.67	-0.0
3,602,912	-		GFF3557	0.69	+1.3
3,602,919	+		GFF3557	0.69	-1.1
3,602,957	-		GFF3557	0.72	-0.1
3,602,957	-		GFF3557	0.72	-0.5
3,602,957	-		GFF3557	0.72	-0.7
3,603,014	-		GFF3557	0.76	+0.1
3,603,024	-		GFF3557	0.77	-0.4
3,603,026	-		GFF3557	0.77	-0.5
3,603,044	+		GFF3557	0.78	-0.9
3,603,044	+		GFF3557	0.78	+0.3
3,603,049	-		GFF3557	0.78	-0.2
3,603,052	-		GFF3557	0.79	+0.8
3,603,052	-		GFF3557	0.79	-1.0
3,603,059	-		GFF3557	0.79	-1.2
3,603,080	-		GFF3557	0.81	+0.1
3,603,111	+		GFF3557	0.83	-0.1
3,603,128	-		GFF3557	0.84	+0.7
3,603,150	+		GFF3557	0.85	-0.9
3,603,150	+		GFF3557	0.85	-0.1
3,603,150	+		GFF3557	0.85	-0.4
3,603,158	-		GFF3557	0.86	-1.8
3,603,186	+		GFF3557	0.88	-1.2
3,603,186	+		GFF3557	0.88	-0.7
3,603,186	+		GFF3557	0.88	-0.8
3,603,186	+		GFF3557	0.88	-0.5
3,603,189	-		GFF3557	0.88	-0.5
3,603,192	-		GFF3557	0.88	+0.4
3,603,194	-		GFF3557	0.88	-0.2
3,603,194	-		GFF3557	0.88	-0.6
3,603,194	-		GFF3557	0.88	-1.2
3,603,194	-		GFF3557	0.88	-0.2
3,603,196	+		GFF3557	0.89	-1.1
3,603,196	+		GFF3557	0.89	+1.7
3,603,204	-		GFF3557	0.89	-0.7
3,603,204	-		GFF3557	0.89	+0.1
3,603,204	-		GFF3557	0.89	+0.1
3,603,207	-		GFF3557	0.89	-2.6
3,603,209	-		GFF3557	0.90	-0.2
3,603,253	+				-0.6
3,603,261	-				-0.0
3,603,268	-				-0.5
3,603,289	+				+0.5
3,603,292	+				+0.3
3,603,292	+				+0.0
3,603,292	+				+1.7
3,603,292	-				-1.1
3,603,297	+				-1.6
3,603,297	+				-1.9
3,603,297	+				+1.9
3,603,297	+				+0.6
3,603,297	+				-0.2
3,603,297	+				+0.6
3,603,297	+				-0.6
3,603,297	+				+0.5
3,603,299	-				-2.0
3,603,300	-				-0.2
3,603,300	-				-0.6
3,603,300	-				-0.1
3,603,305	-				-1.5
3,603,305	-				-0.4
3,603,305	-				-0.1
3,603,305	-				-1.0
3,603,305	-				+1.6
3,603,305	-				-0.8
3,603,318	+				+0.6
3,603,326	+				+0.7
3,603,326	-				-0.3
3,603,326	-				+0.3
3,603,326	-				+1.3
3,603,332	+				+0.4
3,603,332	+				+1.2
3,603,332	+				-1.8
3,603,332	+				-2.5
3,603,332	+				-2.0
3,603,332	+				+1.1
3,603,332	+				-0.1
3,603,340	-				+1.2
3,603,340	-				+0.4
3,603,340	-				-1.9
3,603,340	-				-1.0
3,603,340	-				-0.4
3,603,340	-				-0.2
3,603,340	-				-0.4
3,603,340	-				+1.1
3,603,350	+				-0.8
3,603,350	+				-1.2
3,603,350	+				+0.2
3,603,376	+				+0.3
3,603,376	+				+1.2
3,603,376	+				+0.2
3,603,376	+				-1.5
3,603,376	+				+0.3
3,603,376	+				+0.4
3,603,376	+				+0.1
3,603,376	+				-0.3
3,603,376	+				+0.5
3,603,376	+				-1.4
3,603,376	+				-0.2
3,603,376	+				-1.7
3,603,376	+				-0.9
3,603,376	+				-1.8
3,603,376	+				+1.1
3,603,376	+				-1.1
3,603,376	+				-2.2
3,603,381	+				+0.6
3,603,384	-				+1.5
3,603,384	-				-1.4
3,603,384	-				+1.1
3,603,384	-				+0.9
3,603,384	-				+0.2
3,603,384	-				-1.1
3,603,384	-				-1.0
3,603,384	-				-1.8
3,603,384	-				-0.9
3,603,384	-				-1.6
3,603,384	-				-0.4
3,603,384	-				+0.5
3,603,384	-				+0.3
3,603,384	-				+0.9
3,603,384	-				-0.8
3,603,384	-				-0.7
3,603,384	-				-0.2
3,603,384	-				+1.5
3,603,391	+				-0.6
3,603,398	+				-0.8
3,603,399	-				+0.9
3,603,399	-				+1.5
3,603,401	+				-0.7
3,603,401	+				-1.0
3,603,401	+				-2.1
3,603,401	+				-1.2
3,603,427	+				+1.3
3,603,430	-				+0.6
3,603,430	-				-2.1
3,603,438	-				+1.1
3,603,443	+				+0.0
3,603,451	+				+0.8
3,603,451	+				-0.9
3,603,451	+				-0.8
3,603,451	-				-2.2
3,603,451	-				-0.5
3,603,451	-				-0.4
3,603,453	+				+0.3
3,603,453	+				-0.0
3,603,453	+				-0.9
3,603,456	+				-0.6
3,603,459	-				+0.4
3,603,461	-				+1.0
3,603,461	-				-0.9
3,603,461	-				+0.2
3,603,464	-				-0.7
3,603,506	+		GFF3558	0.14	+1.0
3,603,511	+		GFF3558	0.14	+0.2
3,603,554	+		GFF3558	0.18	+0.2
3,603,562	-		GFF3558	0.19	-0.5
3,603,571	-		GFF3558	0.20	+0.8
3,603,598	-		GFF3558	0.22	-0.6
3,603,607	+		GFF3558	0.23	-1.1
3,603,607	+		GFF3558	0.23	-0.7
3,603,607	+		GFF3558	0.23	+0.0
3,603,607	+		GFF3558	0.23	+0.5
3,603,607	-		GFF3558	0.23	-0.3
3,603,607	-		GFF3558	0.23	+0.3
3,603,615	-		GFF3558	0.24	-2.4
3,603,615	-		GFF3558	0.24	+0.4
3,603,615	-		GFF3558	0.24	-0.4
3,603,615	-		GFF3558	0.24	-0.1
3,603,623	-		GFF3558	0.25	-0.3
3,603,661	+		GFF3558	0.28	-2.6
3,603,693	+		GFF3558	0.31	+0.1
3,603,704	+		GFF3558	0.32	-1.1
3,603,709	+		GFF3558	0.33	-0.2
3,603,712	-		GFF3558	0.33	+0.3
3,603,712	-		GFF3558	0.33	-1.7
3,603,722	-		GFF3558	0.34	-1.4
3,603,729	+		GFF3558	0.35	-1.2
3,603,732	-		GFF3558	0.35	-0.2
3,603,790	-		GFF3558	0.40	+0.8
3,603,796	+		GFF3558	0.41	-0.5
3,603,804	-		GFF3558	0.42	-0.5
3,603,804	-		GFF3558	0.42	+1.2
3,603,833	+		GFF3558	0.44	-1.4
3,603,833	+		GFF3558	0.44	+0.8
3,603,833	+		GFF3558	0.44	-1.9
3,603,833	+		GFF3558	0.44	+1.4
3,603,839	+		GFF3558	0.45	-0.3
3,603,839	+		GFF3558	0.45	+0.1
3,603,839	+		GFF3558	0.45	-1.8
3,603,839	+		GFF3558	0.45	-0.1
3,603,841	-		GFF3558	0.45	-1.6
3,603,841	-		GFF3558	0.45	-0.9
3,603,841	-		GFF3558	0.45	+1.1
3,603,843	+		GFF3558	0.45	-0.4
3,603,843	+		GFF3558	0.45	+0.3
3,603,843	+		GFF3558	0.45	-1.4
3,603,845	+		GFF3558	0.45	+0.8
3,603,847	-		GFF3558	0.46	+0.3
3,603,847	-		GFF3558	0.46	+0.8
3,603,847	-		GFF3558	0.46	+0.3
3,603,847	-		GFF3558	0.46	+0.1
3,603,847	-		GFF3558	0.46	-0.2
3,603,849	+		GFF3558	0.46	-0.8
3,603,849	+		GFF3558	0.46	+0.8
3,603,849	+		GFF3558	0.46	-1.4
3,603,851	-		GFF3558	0.46	-0.5
3,603,851	-		GFF3558	0.46	-0.4
3,603,851	-		GFF3558	0.46	+1.6
3,603,851	-		GFF3558	0.46	+0.3
3,603,851	-		GFF3558	0.46	+2.2
3,603,851	-		GFF3558	0.46	-0.4
3,603,857	+		GFF3558	0.47	+1.2
3,603,857	-		GFF3558	0.47	+0.7
3,603,857	-		GFF3558	0.47	+0.8
3,603,857	-		GFF3558	0.47	-0.1
3,603,857	-		GFF3558	0.47	+0.6
3,603,866	+		GFF3558	0.47	-2.5
3,603,870	-		GFF3558	0.48	-0.9
3,603,898	+		GFF3558	0.50	-0.4
3,603,898	+		GFF3558	0.50	-0.1
3,603,901	+		GFF3558	0.51	+0.2
3,603,906	-		GFF3558	0.51	-1.8
3,603,906	-		GFF3558	0.51	-0.1
3,603,917	+		GFF3558	0.52	-0.1
3,603,917	+		GFF3558	0.52	+0.3
3,603,917	+		GFF3558	0.52	-1.4
3,603,925	-		GFF3558	0.53	+0.8
3,603,925	-		GFF3558	0.53	-0.0
3,603,925	-		GFF3558	0.53	+0.1
3,603,925	-		GFF3558	0.53	+0.6
3,603,925	-		GFF3558	0.53	-1.9
3,603,925	-		GFF3558	0.53	+0.5
3,603,956	+		GFF3558	0.56	+1.3
3,603,961	+		GFF3558	0.56	+1.1
3,603,961	+		GFF3558	0.56	-1.0
3,603,969	-		GFF3558	0.57	+0.4
3,603,996	-		GFF3558	0.60	-1.8
3,603,996	-		GFF3558	0.60	+0.6
3,604,006	-		GFF3558	0.61	+0.3
3,604,006	-		GFF3558	0.61	+0.2
3,604,020	+		GFF3558	0.62	+2.0
3,604,020	+		GFF3558	0.62	-1.1
3,604,021	+		GFF3558	0.62	-1.3
3,604,021	+		GFF3558	0.62	-1.2
3,604,021	-		GFF3558	0.62	+1.3
3,604,027	+		GFF3558	0.62	+1.2
3,604,028	-		GFF3558	0.63	+0.7
3,604,028	-		GFF3558	0.63	+1.1
3,604,028	-		GFF3558	0.63	-0.9
3,604,028	-		GFF3558	0.63	+0.6
3,604,043	-		GFF3558	0.64	+0.0
3,604,043	-		GFF3558	0.64	-1.8
3,604,046	+		GFF3558	0.64	-0.3
3,604,046	+		GFF3558	0.64	-0.1
3,604,049	-		GFF3558	0.65	+0.8
3,604,050	+		GFF3558	0.65	-1.3
3,604,054	-		GFF3558	0.65	-0.6
3,604,054	-		GFF3558	0.65	-1.0
3,604,063	+		GFF3558	0.66	-0.5
3,604,063	+		GFF3558	0.66	-0.1
3,604,068	+		GFF3558	0.66	-1.1
3,604,071	-		GFF3558	0.67	-0.8
3,604,071	-		GFF3558	0.67	-0.7
3,604,073	-		GFF3558	0.67	+0.7
3,604,111	+		GFF3558	0.70	-0.3
3,604,111	+		GFF3558	0.70	+0.8
3,604,111	+		GFF3558	0.70	-0.2
3,604,111	+		GFF3558	0.70	+1.0
3,604,111	+		GFF3558	0.70	-0.1
3,604,111	+		GFF3558	0.70	+0.2
3,604,112	+		GFF3558	0.70	+0.1
3,604,112	+		GFF3558	0.70	-1.5
3,604,112	+		GFF3558	0.70	-0.3
3,604,112	+		GFF3558	0.70	+0.5
3,604,112	+		GFF3558	0.70	+0.3
3,604,119	-		GFF3558	0.71	-1.6
3,604,119	-		GFF3558	0.71	-0.2
3,604,120	-		GFF3558	0.71	+0.5
3,604,120	-		GFF3558	0.71	-0.0
3,604,120	-		GFF3558	0.71	+0.8
3,604,120	-		GFF3558	0.71	+1.3
3,604,125	-		GFF3558	0.72	+0.3
3,604,134	-		GFF3558	0.72	-1.1
3,604,135	-		GFF3558	0.73	-1.8
3,604,135	-		GFF3558	0.73	-1.3
3,604,135	-		GFF3558	0.73	+0.5
3,604,135	-		GFF3558	0.73	+0.2
3,604,141	+		GFF3558	0.73	+0.0
3,604,141	+		GFF3558	0.73	+1.0
3,604,151	+		GFF3558	0.74	+0.3
3,604,151	+		GFF3558	0.74	-1.0
3,604,151	+		GFF3558	0.74	-1.8
3,604,151	+		GFF3558	0.74	-0.2
3,604,151	+		GFF3558	0.74	-0.5
3,604,151	+		GFF3558	0.74	-0.7
3,604,151	+		GFF3558	0.74	+0.6
3,604,151	+		GFF3558	0.74	+2.0
3,604,159	-		GFF3558	0.75	+0.1
3,604,159	-		GFF3558	0.75	-2.4
3,604,159	-		GFF3558	0.75	+0.5
3,604,159	-		GFF3558	0.75	-1.4
3,604,159	-		GFF3558	0.75	-0.9
3,604,159	-		GFF3558	0.75	-0.1
3,604,193	+		GFF3558	0.78	-1.8
3,604,193	+		GFF3558	0.78	+1.0
3,604,198	-		GFF3558	0.78	+1.3
3,604,201	+		GFF3558	0.79	-0.6
3,604,201	-		GFF3558	0.79	-1.0
3,604,201	-		GFF3558	0.79	-1.1
3,604,203	+		GFF3558	0.79	-0.0
3,604,203	+		GFF3558	0.79	-1.0
3,604,203	+		GFF3558	0.79	+0.8
3,604,203	+		GFF3558	0.79	-0.1
3,604,203	+		GFF3558	0.79	+0.8
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3,604,203	+		GFF3558	0.79	-1.1
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3,604,203	+		GFF3558	0.79	+1.3
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3,604,203	+		GFF3558	0.79	+2.2
3,604,203	+		GFF3558	0.79	+1.1
3,604,203	+		GFF3558	0.79	-2.3
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3,604,211	-		GFF3558	0.80	-2.4
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3,604,211	-		GFF3558	0.80	-0.5
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3,604,211	-		GFF3558	0.80	-0.1
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3,604,211	-		GFF3558	0.80	-0.8
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3,604,211	-		GFF3558	0.80	-0.3
3,604,211	-		GFF3558	0.80	+0.1
3,604,211	-		GFF3558	0.80	-1.1
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3,604,211	-		GFF3558	0.80	-1.4
3,604,211	-		GFF3558	0.80	+0.1
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3,604,217	-		GFF3558	0.80	-1.0
3,604,232	+		GFF3558	0.82	-1.5
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3,604,286	-		GFF3558	0.87	-1.2
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3,604,288	+		GFF3558	0.87	-0.4
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3,604,296	-		GFF3558	0.88	-0.3
3,604,301	+		GFF3558	0.88	-0.1
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3,604,306	+		GFF3558	0.89	+1.2
3,604,306	+		GFF3558	0.89	+1.3
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3,604,306	+		GFF3558	0.89	-1.2
3,604,306	+		GFF3558	0.89	+0.4
3,604,309	-		GFF3558	0.89	-1.3
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3,604,311	+		GFF3558	0.89	-0.6
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3,604,321	+		GFF3558	0.90	+0.2
3,604,321	+		GFF3558	0.90	+0.3
3,604,321	+		GFF3558	0.90	-0.3
3,604,329	-				-2.0
3,604,329	-				+1.0
3,604,329	-				+1.3
3,604,341	+				-1.1
3,604,341	+				-1.8
3,604,346	+				+0.3
3,604,349	-				-0.2
3,604,349	-				-1.6
3,604,373	+				+0.3
3,604,381	-				+0.7
3,604,381	-				+0.7
3,604,381	-				-1.2
3,604,393	-				+0.3
3,604,473	-				+0.5
3,604,509	-				+1.1
3,604,543	-				-0.6
3,604,560	-		GFF3559	0.10	-0.8
3,604,581	-		GFF3559	0.13	+0.1
3,604,582	-		GFF3559	0.13	-1.1
3,604,589	-		GFF3559	0.14	+1.2
3,604,589	-		GFF3559	0.14	+0.8
3,604,589	-		GFF3559	0.14	+0.9
3,604,629	+		GFF3559	0.20	-1.2
3,604,632	-		GFF3559	0.21	+1.3
3,604,637	-		GFF3559	0.22	+0.2
3,604,649	-		GFF3559	0.23	+0.2
3,604,649	-		GFF3559	0.23	-0.7
3,604,719	+		GFF3559	0.34	-1.2
3,604,787	+		GFF3559	0.44	-1.5
3,604,817	-		GFF3559	0.48	-1.1
3,604,818	-		GFF3559	0.48	-0.5
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3,604,827	+		GFF3559	0.50	+0.5
3,604,846	+		GFF3559	0.52	+1.9
3,604,854	+		GFF3559	0.54	+0.9
3,604,854	-		GFF3559	0.54	-0.8
3,604,854	-		GFF3559	0.54	-1.7
3,604,876	-		GFF3559	0.57	+0.9
3,604,888	-		GFF3559	0.59	-1.4
3,604,888	-		GFF3559	0.59	-1.1
3,604,888	-		GFF3559	0.59	+0.3
3,604,908	+		GFF3559	0.62	+0.2
3,604,913	+		GFF3559	0.62	-2.0
3,604,919	+		GFF3559	0.63	-0.2
3,604,921	-		GFF3559	0.63	-0.2
3,604,927	-		GFF3559	0.64	-0.6
3,604,927	-		GFF3559	0.64	+0.5
3,604,929	+		GFF3559	0.65	-1.4
3,604,947	-		GFF3559	0.67	+0.5
3,604,963	+		GFF3559	0.70	-1.2
3,604,996	+		GFF3559	0.74	-0.8
3,604,996	+		GFF3559	0.74	+0.5
3,605,009	+		GFF3559	0.76	-1.5
3,605,015	+		GFF3559	0.77	-2.4
3,605,015	+		GFF3559	0.77	-0.7
3,605,015	+		GFF3559	0.77	+1.6
3,605,029	-		GFF3559	0.79	-0.6
3,605,132	-				-0.6
3,605,162	+				-0.1
3,605,163	+				+0.3
3,605,163	+				-2.1
3,605,163	+				+0.5
3,605,171	-				-0.4
3,605,171	-				-2.4
3,605,172	+				+0.5
3,605,175	-				-1.5
3,605,215	+				-0.5
3,605,233	+				-1.2
3,605,336	+				+0.0
3,605,388	+		GFF3560	0.11	+0.2
3,605,389	-		GFF3560	0.11	+0.1