Strain Fitness in Sphingobium sp. HT1-2 around GFF353

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF351 and GFF352 are separated by 9 nucleotidesGFF352 and GFF353 are separated by 2 nucleotidesGFF353 and GFF354 overlap by 1 nucleotidesGFF354 and GFF355 are separated by 88 nucleotides GFF351 - 'Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)' transl_table=11, at 344,137 to 344,577 GFF351 GFF352 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 344,587 to 345,222 GFF352 GFF353 - Acid phosphatase (EC 3.1.3.2), at 345,225 to 346,109 GFF353 GFF354 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 346,109 to 346,819 GFF354 GFF355 - Transcriptional regulator Swit_0960, LysR family, at 346,908 to 347,798 GFF355 Position (kb) 345 346 347Strain fitness (log2 ratio) -2 -1 0 1 2at 344.234 kb on + strand, within GFF351at 344.257 kb on - strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.291 kb on + strand, within GFF351at 344.296 kb on + strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.299 kb on - strand, within GFF351at 344.305 kb on + strand, within GFF351at 344.323 kb on - strand, within GFF351at 344.331 kb on - strand, within GFF351at 344.372 kb on + strand, within GFF351at 344.415 kb on + strand, within GFF351at 344.439 kb on + strand, within GFF351at 344.491 kb on - strand, within GFF351at 344.500 kb on - strand, within GFF351at 344.504 kb on - strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.524 kb on - strand, within GFF351at 344.579 kb on - strandat 344.583 kb on + strandat 344.633 kb on + strandat 344.639 kb on + strandat 344.643 kb on + strandat 344.657 kb on + strand, within GFF352at 344.660 kb on - strand, within GFF352at 344.693 kb on + strand, within GFF352at 344.700 kb on + strand, within GFF352at 344.708 kb on - strand, within GFF352at 344.708 kb on - strand, within GFF352at 344.747 kb on + strand, within GFF352at 344.755 kb on - strand, within GFF352at 344.791 kb on + strand, within GFF352at 344.797 kb on - strand, within GFF352at 344.799 kb on - strand, within GFF352at 344.801 kb on + strand, within GFF352at 344.824 kb on + strand, within GFF352at 344.825 kb on + strand, within GFF352at 344.842 kb on + strand, within GFF352at 344.843 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.849 kb on + strand, within GFF352at 344.850 kb on - strand, within GFF352at 344.894 kb on + strand, within GFF352at 344.912 kb on - strand, within GFF352at 344.950 kb on - strand, within GFF352at 344.960 kb on - strand, within GFF352at 344.997 kb on + strand, within GFF352at 345.017 kb on + strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.025 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.030 kb on - strand, within GFF352at 345.035 kb on - strand, within GFF352at 345.045 kb on - strand, within GFF352at 345.052 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.107 kb on - strand, within GFF352at 345.212 kb on + strandat 345.219 kb on - strandat 345.219 kb on - strandat 345.220 kb on - strandat 345.291 kb on + strandat 345.313 kb on + strandat 345.313 kb on + strandat 345.327 kb on + strand, within GFF353at 345.345 kb on - strand, within GFF353at 345.348 kb on - strand, within GFF353at 345.348 kb on - strand, within GFF353at 345.363 kb on + strand, within GFF353at 345.388 kb on + strand, within GFF353at 345.393 kb on + strand, within GFF353at 345.393 kb on + strand, within GFF353at 345.403 kb on + strand, within GFF353at 345.403 kb on + strand, within GFF353at 345.408 kb on + strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.411 kb on - strand, within GFF353at 345.455 kb on + strand, within GFF353at 345.463 kb on - strand, within GFF353at 345.463 kb on - strand, within GFF353at 345.473 kb on - strand, within GFF353at 345.530 kb on + strand, within GFF353at 345.552 kb on + strand, within GFF353at 345.555 kb on - strand, within GFF353at 345.560 kb on - strand, within GFF353at 345.560 kb on - strand, within GFF353at 345.608 kb on + strand, within GFF353at 345.621 kb on - strand, within GFF353at 345.636 kb on - strand, within GFF353at 345.650 kb on + strand, within GFF353at 345.663 kb on + strand, within GFF353at 345.682 kb on - strand, within GFF353at 345.704 kb on + strand, within GFF353at 345.728 kb on + strand, within GFF353at 345.730 kb on + strand, within GFF353at 345.737 kb on - strand, within GFF353at 345.774 kb on + strand, within GFF353at 345.774 kb on + strand, within GFF353at 345.777 kb on - strand, within GFF353at 345.779 kb on + strand, within GFF353at 345.782 kb on - strand, within GFF353at 345.857 kb on - strand, within GFF353at 345.870 kb on - strand, within GFF353at 345.883 kb on - strand, within GFF353at 345.939 kb on - strand, within GFF353at 345.939 kb on - strand, within GFF353at 346.034 kb on + strandat 346.059 kb on - strandat 346.132 kb on - strandat 346.142 kb on - strandat 346.186 kb on + strand, within GFF354at 346.210 kb on + strand, within GFF354at 346.224 kb on - strand, within GFF354at 346.232 kb on + strand, within GFF354at 346.234 kb on - strand, within GFF354at 346.243 kb on - strand, within GFF354at 346.247 kb on - strand, within GFF354at 346.265 kb on - strand, within GFF354at 346.316 kb on + strand, within GFF354at 346.349 kb on - strand, within GFF354at 346.349 kb on - strand, within GFF354at 346.355 kb on - strand, within GFF354at 346.363 kb on - strand, within GFF354at 346.392 kb on - strand, within GFF354at 346.392 kb on - strand, within GFF354at 346.397 kb on - strand, within GFF354at 346.397 kb on - strand, within GFF354at 346.425 kb on + strand, within GFF354at 346.427 kb on - strand, within GFF354at 346.563 kb on + strand, within GFF354at 346.582 kb on + strand, within GFF354at 346.582 kb on + strand, within GFF354at 346.590 kb on - strand, within GFF354at 346.622 kb on - strand, within GFF354at 346.622 kb on - strand, within GFF354at 346.628 kb on + strand, within GFF354at 346.628 kb on + strand, within GFF354at 346.631 kb on - strand, within GFF354at 346.633 kb on + strand, within GFF354at 346.633 kb on + strand, within GFF354at 346.633 kb on + strand, within GFF354at 346.633 kb on + strand, within GFF354at 346.633 kb on + strand, within GFF354at 346.636 kb on - strand, within GFF354at 346.670 kb on + strand, within GFF354at 346.678 kb on - strand, within GFF354at 346.678 kb on - strand, within GFF354at 346.678 kb on - strand, within GFF354at 346.722 kb on + strand, within GFF354at 346.722 kb on + strand, within GFF354at 346.722 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.732 kb on + strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.740 kb on - strand, within GFF354at 346.753 kb on + strandat 346.769 kb on + strandat 346.769 kb on - strandat 346.769 kb on - strandat 346.800 kb on + strandat 346.800 kb on + strandat 346.800 kb on + strandat 346.800 kb on + strandat 346.800 kb on + strandat 346.800 kb on + strandat 346.808 kb on - strandat 346.808 kb on - strandat 346.808 kb on - strandat 346.808 kb on - strandat 346.808 kb on - strandat 346.808 kb on - strandat 346.808 kb on - strandat 346.808 kb on - strandat 346.830 kb on - strandat 346.858 kb on - strandat 346.926 kb on + strandat 346.937 kb on + strandat 346.944 kb on + strandat 346.945 kb on - strandat 346.949 kb on + strandat 346.949 kb on + strandat 346.949 kb on + strandat 346.949 kb on + strandat 346.949 kb on + strandat 346.957 kb on - strandat 346.957 kb on - strandat 346.957 kb on - strandat 346.994 kb on + strandat 347.002 kb on - strand, within GFF355at 347.002 kb on - strand, within GFF355at 347.002 kb on - strand, within GFF355at 347.037 kb on + strand, within GFF355at 347.048 kb on + strand, within GFF355at 347.083 kb on + strand, within GFF355at 347.090 kb on + strand, within GFF355

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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344,234 + GFF351 0.22 -1.8
344,257 - GFF351 0.27 -0.0
344,291 + GFF351 0.35 -0.8
344,291 + GFF351 0.35 -0.2
344,291 + GFF351 0.35 +0.5
344,291 + GFF351 0.35 +0.3
344,291 + GFF351 0.35 -0.6
344,291 + GFF351 0.35 -1.1
344,291 + GFF351 0.35 +1.2
344,296 + GFF351 0.36 +2.1
344,299 - GFF351 0.37 +0.3
344,299 - GFF351 0.37 +0.4
344,299 - GFF351 0.37 +0.8
344,299 - GFF351 0.37 +0.2
344,299 - GFF351 0.37 -0.9
344,299 - GFF351 0.37 +0.3
344,299 - GFF351 0.37 +0.8
344,305 + GFF351 0.38 -1.2
344,323 - GFF351 0.42 -1.4
344,331 - GFF351 0.44 -0.3
344,372 + GFF351 0.53 -2.2
344,415 + GFF351 0.63 -1.3
344,439 + GFF351 0.68 -1.1
344,491 - GFF351 0.80 +1.0
344,500 - GFF351 0.82 +2.6
344,504 - GFF351 0.83 -0.2
344,524 - GFF351 0.88 -0.2
344,524 - GFF351 0.88 -0.2
344,524 - GFF351 0.88 -0.4
344,579 - +0.3
344,583 + +1.7
344,633 + -0.8
344,639 + +0.8
344,643 + +1.8
344,657 + GFF352 0.11 +0.7
344,660 - GFF352 0.11 -1.6
344,693 + GFF352 0.17 -1.1
344,700 + GFF352 0.18 -2.1
344,708 - GFF352 0.19 -0.8
344,708 - GFF352 0.19 +0.5
344,747 + GFF352 0.25 +0.2
344,755 - GFF352 0.26 -0.1
344,791 + GFF352 0.32 +0.7
344,797 - GFF352 0.33 -0.5
344,799 - GFF352 0.33 -0.2
344,801 + GFF352 0.34 -0.9
344,824 + GFF352 0.37 -0.2
344,825 + GFF352 0.37 +0.2
344,842 + GFF352 0.40 -0.2
344,843 + GFF352 0.40 -1.2
344,849 + GFF352 0.41 +0.3
344,849 + GFF352 0.41 -1.6
344,849 + GFF352 0.41 -1.3
344,850 - GFF352 0.41 +0.2
344,894 + GFF352 0.48 +0.0
344,912 - GFF352 0.51 +1.6
344,950 - GFF352 0.57 -1.5
344,960 - GFF352 0.59 -1.3
344,997 + GFF352 0.64 +0.2
345,017 + GFF352 0.68 +0.6
345,025 - GFF352 0.69 -0.1
345,025 - GFF352 0.69 -0.0
345,025 - GFF352 0.69 -0.5
345,030 - GFF352 0.70 -0.3
345,030 - GFF352 0.70 -0.9
345,030 - GFF352 0.70 +0.1
345,035 - GFF352 0.70 +0.4
345,045 - GFF352 0.72 +0.2
345,052 - GFF352 0.73 -0.7
345,107 - GFF352 0.82 -0.1
345,107 - GFF352 0.82 -0.3
345,107 - GFF352 0.82 -0.8
345,212 + +0.3
345,219 - -1.3
345,219 - +1.6
345,220 - +0.7
345,291 + +0.1
345,313 + -1.2
345,313 + -1.0
345,327 + GFF353 0.12 -1.6
345,345 - GFF353 0.14 +1.2
345,348 - GFF353 0.14 -1.1
345,348 - GFF353 0.14 -0.3
345,363 + GFF353 0.16 -1.5
345,388 + GFF353 0.18 -0.1
345,393 + GFF353 0.19 +2.0
345,393 + GFF353 0.19 +0.7
345,403 + GFF353 0.20 -0.5
345,403 + GFF353 0.20 -0.4
345,408 + GFF353 0.21 -1.2
345,411 - GFF353 0.21 -0.3
345,411 - GFF353 0.21 -0.3
345,411 - GFF353 0.21 -0.2
345,455 + GFF353 0.26 -0.4
345,463 - GFF353 0.27 +1.4
345,463 - GFF353 0.27 -0.3
345,473 - GFF353 0.28 -0.3
345,530 + GFF353 0.34 +0.2
345,552 + GFF353 0.37 -0.5
345,555 - GFF353 0.37 -2.5
345,560 - GFF353 0.38 +1.1
345,560 - GFF353 0.38 +0.2
345,608 + GFF353 0.43 +1.3
345,621 - GFF353 0.45 -0.4
345,636 - GFF353 0.46 -1.8
345,650 + GFF353 0.48 -1.0
345,663 + GFF353 0.49 +1.0
345,682 - GFF353 0.52 +0.2
345,704 + GFF353 0.54 -0.4
345,728 + GFF353 0.57 +0.5
345,730 + GFF353 0.57 +0.0
345,737 - GFF353 0.58 +1.6
345,774 + GFF353 0.62 -0.1
345,774 + GFF353 0.62 +0.3
345,777 - GFF353 0.62 -1.3
345,779 + GFF353 0.63 +0.2
345,782 - GFF353 0.63 +0.8
345,857 - GFF353 0.71 +0.5
345,870 - GFF353 0.73 +0.6
345,883 - GFF353 0.74 +1.6
345,939 - GFF353 0.81 -0.1
345,939 - GFF353 0.81 -0.2
346,034 + +0.1
346,059 - -1.9
346,132 - -0.3
346,142 - +1.9
346,186 + GFF354 0.11 +0.8
346,210 + GFF354 0.14 -0.1
346,224 - GFF354 0.16 -1.2
346,232 + GFF354 0.17 +0.1
346,234 - GFF354 0.18 -1.1
346,243 - GFF354 0.19 +1.4
346,247 - GFF354 0.19 +0.9
346,265 - GFF354 0.22 -0.6
346,316 + GFF354 0.29 -1.3
346,349 - GFF354 0.34 +0.1
346,349 - GFF354 0.34 +0.2
346,355 - GFF354 0.35 +0.4
346,363 - GFF354 0.36 -0.7
346,392 - GFF354 0.40 -0.5
346,392 - GFF354 0.40 -0.1
346,397 - GFF354 0.41 -1.0
346,397 - GFF354 0.41 +1.1
346,425 + GFF354 0.44 -0.4
346,427 - GFF354 0.45 -1.5
346,563 + GFF354 0.64 +1.4
346,582 + GFF354 0.67 +0.6
346,582 + GFF354 0.67 -0.8
346,590 - GFF354 0.68 +0.9
346,622 - GFF354 0.72 +0.6
346,622 - GFF354 0.72 +0.2
346,628 + GFF354 0.73 +1.7
346,628 + GFF354 0.73 +0.6
346,631 - GFF354 0.73 +0.5
346,633 + GFF354 0.74 +1.4
346,633 + GFF354 0.74 -2.5
346,633 + GFF354 0.74 +1.9
346,633 + GFF354 0.74 +0.8
346,633 + GFF354 0.74 -0.1
346,636 - GFF354 0.74 +0.3
346,670 + GFF354 0.79 +0.0
346,678 - GFF354 0.80 -0.7
346,678 - GFF354 0.80 -0.2
346,678 - GFF354 0.80 +0.6
346,722 + GFF354 0.86 -0.9
346,722 + GFF354 0.86 +0.9
346,722 + GFF354 0.86 -1.0
346,732 + GFF354 0.88 -0.5
346,732 + GFF354 0.88 +0.1
346,732 + GFF354 0.88 -0.9
346,732 + GFF354 0.88 +0.3
346,732 + GFF354 0.88 +0.3
346,732 + GFF354 0.88 -0.5
346,732 + GFF354 0.88 -0.3
346,732 + GFF354 0.88 +0.9
346,740 - GFF354 0.89 -1.1
346,740 - GFF354 0.89 +0.1
346,740 - GFF354 0.89 +0.6
346,740 - GFF354 0.89 +1.1
346,740 - GFF354 0.89 -0.6
346,740 - GFF354 0.89 +0.1
346,740 - GFF354 0.89 -0.5
346,740 - GFF354 0.89 +0.2
346,740 - GFF354 0.89 -0.0
346,740 - GFF354 0.89 +0.2
346,740 - GFF354 0.89 -0.7
346,740 - GFF354 0.89 +0.7
346,740 - GFF354 0.89 -2.2
346,740 - GFF354 0.89 +0.1
346,740 - GFF354 0.89 +0.3
346,740 - GFF354 0.89 -0.6
346,753 + -1.4
346,769 + +0.2
346,769 - +1.0
346,769 - +1.1
346,800 + -0.1
346,800 + -0.5
346,800 + +0.3
346,800 + -0.6
346,800 + -0.6
346,800 + -0.6
346,808 - +1.1
346,808 - -1.1
346,808 - +1.1
346,808 - -1.2
346,808 - -1.4
346,808 - -0.2
346,808 - +0.7
346,808 - -0.3
346,830 - -1.1
346,858 - -1.3
346,926 + +0.7
346,937 + +0.6
346,944 + -0.5
346,945 - -0.6
346,949 + -1.3
346,949 + +0.8
346,949 + -0.3
346,949 + -0.5
346,949 + -0.7
346,957 - +0.0
346,957 - +0.5
346,957 - +0.2
346,994 + +1.1
347,002 - GFF355 0.11 -2.1
347,002 - GFF355 0.11 -0.3
347,002 - GFF355 0.11 +0.9
347,037 + GFF355 0.14 -1.3
347,048 + GFF355 0.16 -0.3
347,083 + GFF355 0.20 +0.5
347,090 + GFF355 0.20 -0.6

Or see this region's nucleotide sequence