Strain Fitness in Sphingobium sp. HT1-2 around GFF3502

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,539,640	+		GFF3501	0.59	-0.0
3,539,645	+		GFF3501	0.60	-1.2
3,539,662	+		GFF3501	0.62	-0.8
3,539,666	+		GFF3501	0.63	+0.1
3,539,674	+		GFF3501	0.64	-1.3
3,539,674	-		GFF3501	0.64	-0.5
3,539,674	-		GFF3501	0.64	+1.0
3,539,745	+		GFF3501	0.72	-2.2
3,539,745	+		GFF3501	0.72	-1.9
3,539,755	+		GFF3501	0.73	-1.3
3,539,755	+		GFF3501	0.73	+0.3
3,539,755	+		GFF3501	0.73	-0.5
3,539,757	+		GFF3501	0.74	-0.0
3,539,763	-		GFF3501	0.74	-1.3
3,539,763	-		GFF3501	0.74	-1.1
3,539,763	-		GFF3501	0.74	-1.4
3,539,763	-		GFF3501	0.74	-0.4
3,539,763	-		GFF3501	0.74	-1.0
3,539,763	-		GFF3501	0.74	+0.2
3,539,763	-		GFF3501	0.74	+0.2
3,539,763	-		GFF3501	0.74	-0.7
3,539,763	-		GFF3501	0.74	+0.7
3,539,763	-		GFF3501	0.74	-1.2
3,539,763	-		GFF3501	0.74	+0.5
3,539,837	+		GFF3501	0.83	-2.0
3,539,837	+		GFF3501	0.83	-2.9
3,539,837	+		GFF3501	0.83	-1.2
3,539,837	+		GFF3501	0.83	-0.6
3,539,837	+		GFF3501	0.83	-0.6
3,539,837	+		GFF3501	0.83	-0.4
3,539,837	-		GFF3501	0.83	-1.1
3,539,837	-		GFF3501	0.83	+0.1
3,539,845	-		GFF3501	0.84	+1.0
3,539,845	-		GFF3501	0.84	+1.3
3,539,854	+		GFF3501	0.85	-0.8
3,539,870	+		GFF3501	0.87	+0.1
3,539,871	-		GFF3501	0.87	-2.0
3,539,872	-		GFF3501	0.87	-1.4
3,539,915	-				-0.9
3,539,923	+				+0.0
3,539,923	+				-0.6
3,539,928	+				-1.0
3,539,931	-				-0.2
3,539,954	+				+0.2
3,539,957	-				-1.2
3,539,961	+				+1.1
3,539,962	-				-0.8
3,539,962	-				-0.2
3,539,962	-				-0.5
3,539,982	-				+0.5
3,539,993	-				-0.9
3,540,004	+				+0.5
3,540,004	+				-0.1
3,540,004	+				+0.2
3,540,012	+				-1.6
3,540,012	-				+2.0
3,540,044	+				-2.2
3,540,044	+				-1.2
3,540,049	+				-0.2
3,540,052	-				+1.5
3,540,057	-				-0.5
3,540,062	-				-0.5
3,540,070	-				-1.2
3,540,074	+				-0.8
3,540,074	+				+0.1
3,540,084	-				-2.0
3,540,084	-				-0.5
3,540,102	+				+0.6
3,540,102	+				+0.5
3,540,109	+				-1.8
3,540,125	+				-2.0
3,540,132	+				-1.2
3,540,133	-				-1.7
3,540,165	+				+0.1
3,540,169	-				+1.0
3,540,193	-				+1.4
3,540,218	-				+0.1
3,540,234	+				+0.5
3,540,234	+				-0.4
3,540,234	+				-1.2
3,540,242	+				+1.2
3,540,242	-				+0.4
3,540,242	-				-0.4
3,540,242	-				-0.2
3,540,243	+				-0.5
3,540,245	-				+0.7
3,540,259	+				+1.0
3,540,261	-				+1.1
3,540,267	-				-2.0
3,540,280	-				-0.7
3,540,342	+				+1.0
3,540,350	-				-0.2
3,540,350	-				-0.5
3,540,355	+				+0.9
3,540,363	-				-0.0
3,540,364	-				-2.1
3,540,395	-				+1.2
3,540,467	+				-1.5
3,540,467	+				+0.8
3,540,467	+				-0.2
3,540,475	-				+0.6
3,540,475	-				-0.6
3,540,475	-				-1.3
3,540,584	+				-0.4
3,540,594	+				+0.7
3,540,611	-				-0.3
3,540,622	+				-0.3
3,540,630	-				-0.7
3,540,641	-				+0.3
3,540,644	+				-1.4
3,540,658	+				-1.9
3,540,701	+				-1.3
3,540,709	-				-2.7
3,540,709	-				+0.1
3,540,725	+				-0.6
3,540,725	+				-1.1
3,540,725	+				-0.6
3,540,725	+				-0.5
3,540,728	-				+1.0
3,540,730	+				-1.0
3,540,733	-				-1.1
3,540,733	-				+0.0
3,540,733	-				+0.4
3,540,738	-				-0.5
3,540,752	-				+0.9
3,540,761	+		GFF3502	0.11	-0.7
3,540,766	+		GFF3502	0.11	+0.3
3,540,766	+		GFF3502	0.11	-0.7
3,540,766	+		GFF3502	0.11	-0.4
3,540,766	+		GFF3502	0.11	-0.3
3,540,766	+		GFF3502	0.11	+0.5
3,540,766	+		GFF3502	0.11	-0.6
3,540,766	+		GFF3502	0.11	-0.0
3,540,766	+		GFF3502	0.11	+0.9
3,540,769	-		GFF3502	0.11	-0.0
3,540,774	-		GFF3502	0.12	-0.0
3,540,774	-		GFF3502	0.12	-1.0
3,540,774	-		GFF3502	0.12	+0.7
3,540,774	-		GFF3502	0.12	-0.7
3,540,774	-		GFF3502	0.12	+0.6
3,540,774	-		GFF3502	0.12	-0.3
3,540,788	-		GFF3502	0.13	-0.5
3,540,800	+		GFF3502	0.14	-0.3
3,540,806	+		GFF3502	0.15	-1.0
3,540,830	-		GFF3502	0.17	-0.0
3,540,856	+		GFF3502	0.19	-1.6
3,540,858	-		GFF3502	0.19	-0.0
3,540,858	-		GFF3502	0.19	-1.7
3,540,883	-		GFF3502	0.21	-0.1
3,540,898	+		GFF3502	0.23	-0.0
3,540,898	+		GFF3502	0.23	+1.2
3,540,898	+		GFF3502	0.23	+1.1
3,540,903	+		GFF3502	0.23	+0.8
3,540,906	-		GFF3502	0.23	-2.9
3,540,906	-		GFF3502	0.23	+0.9
3,540,932	-		GFF3502	0.25	+0.4
3,540,937	-		GFF3502	0.26	-1.2
3,540,954	-		GFF3502	0.27	-0.2
3,540,956	+		GFF3502	0.28	+1.1
3,540,956	+		GFF3502	0.28	+0.1
3,540,960	+		GFF3502	0.28	-0.6
3,540,967	+		GFF3502	0.28	-0.2
3,540,987	+		GFF3502	0.30	-1.6
3,540,990	+		GFF3502	0.30	+0.4
3,541,004	+		GFF3502	0.32	+0.4
3,541,009	+		GFF3502	0.32	-0.3
3,541,024	-		GFF3502	0.33	-1.2
3,541,040	+		GFF3502	0.35	-0.3
3,541,043	-		GFF3502	0.35	-0.7
3,541,054	-		GFF3502	0.36	-2.3
3,541,065	-		GFF3502	0.37	+0.9
3,541,084	-		GFF3502	0.39	-0.5
3,541,099	-		GFF3502	0.40	-0.3
3,541,130	+		GFF3502	0.43	-0.2
3,541,138	-		GFF3502	0.43	+0.2
3,541,145	+		GFF3502	0.44	-0.7
3,541,152	+		GFF3502	0.44	-0.5
3,541,152	+		GFF3502	0.44	-1.4
3,541,152	+		GFF3502	0.44	-1.1
3,541,160	-		GFF3502	0.45	-0.4
3,541,180	-		GFF3502	0.47	-0.9
3,541,196	+		GFF3502	0.48	-0.2
3,541,196	+		GFF3502	0.48	-0.6
3,541,204	-		GFF3502	0.49	+0.5
3,541,226	+		GFF3502	0.51	-1.2
3,541,230	-		GFF3502	0.51	-1.5
3,541,248	+		GFF3502	0.53	-0.8
3,541,250	-		GFF3502	0.53	+0.0
3,541,268	-		GFF3502	0.54	-1.7
3,541,273	-		GFF3502	0.55	-1.0
3,541,275	-		GFF3502	0.55	-1.2
3,541,279	+		GFF3502	0.55	-0.5
3,541,280	-		GFF3502	0.56	-0.3
3,541,296	+		GFF3502	0.57	+0.7
3,541,296	+		GFF3502	0.57	-1.8
3,541,297	+		GFF3502	0.57	+0.4
3,541,306	+		GFF3502	0.58	+0.4
3,541,352	+		GFF3502	0.62	+0.7
3,541,354	-		GFF3502	0.62	+1.2
3,541,354	-		GFF3502	0.62	-0.4
3,541,357	+		GFF3502	0.62	+1.1
3,541,357	+		GFF3502	0.62	-0.3
3,541,357	+		GFF3502	0.62	-0.1
3,541,360	-		GFF3502	0.62	-0.9
3,541,360	-		GFF3502	0.62	+0.5
3,541,365	-		GFF3502	0.63	-0.4
3,541,375	-		GFF3502	0.64	-0.3
3,541,375	-		GFF3502	0.64	+0.4
3,541,383	+		GFF3502	0.64	-1.8
3,541,383	+		GFF3502	0.64	-0.1
3,541,391	-		GFF3502	0.65	+0.7
3,541,391	-		GFF3502	0.65	-0.0
3,541,391	-		GFF3502	0.65	-0.1
3,541,399	+		GFF3502	0.66	-0.3
3,541,407	-		GFF3502	0.66	+1.2
3,541,441	-		GFF3502	0.69	-1.0
3,541,447	-		GFF3502	0.70	-1.9
3,541,473	+		GFF3502	0.72	+0.2
3,541,525	+		GFF3502	0.77	-2.6
3,541,530	+		GFF3502	0.77	-0.6
3,541,530	+		GFF3502	0.77	+0.5
3,541,538	-		GFF3502	0.78	-1.1
3,541,545	-		GFF3502	0.78	-2.1
3,541,555	-		GFF3502	0.79	+0.0
3,541,585	+		GFF3502	0.82	+0.3
3,541,585	+		GFF3502	0.82	-1.1
3,541,586	+		GFF3502	0.82	-0.5
3,541,593	-		GFF3502	0.83	-1.4
3,541,593	-		GFF3502	0.83	-0.4
3,541,595	+		GFF3502	0.83	+0.1
3,541,612	-		GFF3502	0.84	+0.2
3,541,637	+		GFF3502	0.86	-1.2
3,541,644	+		GFF3502	0.87	-1.1
3,541,645	-		GFF3502	0.87	-0.3
3,541,651	+		GFF3502	0.88	+0.3
3,541,651	+		GFF3502	0.88	+0.3
3,541,659	-		GFF3502	0.88	-0.2
3,541,683	+				+0.6
3,541,691	+				-2.1
3,541,722	+				-0.7
3,541,730	-				-0.1
3,541,773	-				-0.5
3,541,793	+				-1.5
3,541,801	-				+0.7
3,541,801	-				-0.0
3,541,801	-				-0.7
3,541,801	-				-1.3
3,541,817	+				-0.3
3,541,817	+				-0.5
3,541,817	+				-0.0
3,541,817	+				-1.0
3,541,817	+				-0.6
3,541,817	+				+0.5
3,541,824	-				+1.5
3,541,824	-				-0.9
3,541,824	-				-0.7
3,541,824	-				+0.3
3,541,825	-				-2.1
3,541,825	-				-1.1
3,541,825	-				-1.0
3,541,825	-				-0.3
3,541,825	-				+0.0
3,541,845	+				-1.3
3,541,845	+				+1.2
3,541,850	+				-1.0
3,541,853	-				-3.0
3,541,853	-				-1.5
3,541,858	-				+0.8
3,541,871	-				+1.1
3,541,873	+				+1.3
3,541,873	+				-0.2
3,541,873	+				-2.0
3,541,873	+				-1.2
3,541,873	+				-0.5
3,541,873	+				+0.6
3,541,873	+				+0.9
3,541,881	-				-2.5
3,541,881	-				-0.6
3,541,881	-				-0.4
3,541,888	-				+0.2
3,541,896	+				-0.2
3,541,904	-				-0.2
3,541,906	+				-0.7
3,541,906	+				-1.6
3,541,906	+				-0.8
3,541,906	+				+0.4
3,541,914	-		GFF3503	0.10	-0.0
3,541,914	-		GFF3503	0.10	-1.5
3,541,914	-		GFF3503	0.10	-0.6
3,541,914	-		GFF3503	0.10	-0.4
3,541,945	-		GFF3503	0.15	+1.5
3,541,956	-		GFF3503	0.17	-0.5
3,541,962	-		GFF3503	0.18	-1.2
3,541,967	-		GFF3503	0.18	+1.3
3,541,989	+		GFF3503	0.22	+0.7
3,541,989	+		GFF3503	0.22	-1.1
3,541,989	+		GFF3503	0.22	+0.2
3,541,989	+		GFF3503	0.22	-1.4
3,541,989	+		GFF3503	0.22	-1.1
3,541,997	-		GFF3503	0.23	-1.5
3,541,997	-		GFF3503	0.23	+1.3
3,541,997	-		GFF3503	0.23	-1.1
3,541,997	-		GFF3503	0.23	+0.3
3,542,006	+		GFF3503	0.24	-0.4
3,542,032	+		GFF3503	0.28	+0.4
3,542,066	+		GFF3503	0.34	+0.8
3,542,066	+		GFF3503	0.34	-1.7
3,542,066	+		GFF3503	0.34	-1.1
3,542,074	+		GFF3503	0.35	-0.7
3,542,074	-		GFF3503	0.35	+1.3
3,542,074	-		GFF3503	0.35	+0.7
3,542,074	-		GFF3503	0.35	-0.5
3,542,074	-		GFF3503	0.35	+0.6
3,542,126	-		GFF3503	0.43	+0.5
3,542,126	-		GFF3503	0.43	-2.5
3,542,166	+		GFF3503	0.49	-0.0
3,542,172	+		GFF3503	0.50	-2.6
3,542,172	+		GFF3503	0.50	+0.3
3,542,180	-		GFF3503	0.51	-1.6
3,542,180	-		GFF3503	0.51	+0.4
3,542,180	-		GFF3503	0.51	-1.2
3,542,181	+		GFF3503	0.51	-0.2
3,542,182	-		GFF3503	0.51	-2.4
3,542,201	+		GFF3503	0.54	+1.1
3,542,208	+		GFF3503	0.55	-1.6
3,542,216	-		GFF3503	0.57	+0.7
3,542,216	-		GFF3503	0.57	+0.8
3,542,216	-		GFF3503	0.57	-0.5
3,542,224	-		GFF3503	0.58	-1.2
3,542,249	-		GFF3503	0.62	+0.9
3,542,288	+		GFF3503	0.68	+0.1
3,542,288	+		GFF3503	0.68	+0.5
3,542,288	+		GFF3503	0.68	+0.9
3,542,288	+		GFF3503	0.68	+0.1
3,542,288	+		GFF3503	0.68	+0.8
3,542,293	+		GFF3503	0.69	+0.7
3,542,293	+		GFF3503	0.69	-1.0
3,542,293	+		GFF3503	0.69	-1.6
3,542,293	+		GFF3503	0.69	+0.2
3,542,293	+		GFF3503	0.69	-2.7
3,542,293	+		GFF3503	0.69	-0.6
3,542,293	+		GFF3503	0.69	+0.3
3,542,293	+		GFF3503	0.69	-0.2
3,542,293	+		GFF3503	0.69	-0.3
3,542,293	+		GFF3503	0.69	+0.6
3,542,296	-		GFF3503	0.69	+0.1
3,542,296	-		GFF3503	0.69	+0.2
3,542,296	-		GFF3503	0.69	+0.2
3,542,296	-		GFF3503	0.69	+0.5
3,542,296	-		GFF3503	0.69	+0.5
3,542,296	-		GFF3503	0.69	-1.7
3,542,296	-		GFF3503	0.69	-2.5
3,542,301	+		GFF3503	0.70	-1.3
3,542,301	-		GFF3503	0.70	-1.2
3,542,301	-		GFF3503	0.70	+0.2
3,542,301	-		GFF3503	0.70	-1.3
3,542,301	-		GFF3503	0.70	-0.0
3,542,301	-		GFF3503	0.70	-0.3
3,542,301	-		GFF3503	0.70	-0.2
3,542,301	-		GFF3503	0.70	-1.2
3,542,301	-		GFF3503	0.70	-0.5
3,542,301	-		GFF3503	0.70	-1.0
3,542,319	+		GFF3503	0.73	-0.9
3,542,344	+		GFF3503	0.76	+0.3
3,542,347	+		GFF3503	0.77	+0.4
3,542,370	+		GFF3503	0.80	+1.5
3,542,371	+		GFF3503	0.80	-1.0
3,542,379	-		GFF3503	0.82	+0.6
3,542,379	-		GFF3503	0.82	-0.7
3,542,379	-		GFF3503	0.82	+0.3
3,542,394	+		GFF3503	0.84	+0.1
3,542,402	+		GFF3503	0.85	+0.4
3,542,430	+		GFF3503	0.90	+0.2
3,542,430	+		GFF3503	0.90	+0.2
3,542,450	+				-0.8
3,542,450	+				-0.8
3,542,458	-				-0.1
3,542,477	-				-0.3
3,542,488	-				+0.0
3,542,492	+				-1.4
3,542,492	+				+0.3
3,542,497	+				-2.3
3,542,497	+				-1.3
3,542,499	+				-0.8
3,542,499	+				+0.3
3,542,500	-				-1.4
3,542,505	-				-0.2
3,542,505	-				-1.2
3,542,505	-				+0.4
3,542,505	-				-0.3
3,542,505	-				+0.9
3,542,506	-				-2.0
3,542,507	-				-2.3
3,542,507	-				-0.1
3,542,507	-				-1.4
3,542,509	+				-0.3
3,542,512	-				-1.3
3,542,514	+				-0.3
3,542,523	-				+0.7
3,542,530	+				-1.4
3,542,534	+				-0.3
3,542,569	+				+0.7
3,542,577	-				-0.1
3,542,597	+				-1.9
3,542,601	+				+1.2
3,542,601	+				-0.3
3,542,601	+				-0.9
3,542,601	+				+0.8
3,542,633	+				-0.6
3,542,656	+				-1.2
3,542,664	-				+0.9
3,542,664	-				+0.9
3,542,664	-				-0.8
3,542,690	-				-0.9
3,542,711	-				+1.8
3,542,744	+				-3.4
3,542,752	-				-0.1
3,542,760	-				-1.3
3,542,771	+				-0.4
3,542,772	+				-0.5
3,542,782	+				-0.0
3,542,782	+				+0.3
3,542,788	+				+0.7