Strain Fitness in Sphingobium sp. HT1-2 around GFF3465

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,504,660	-		GFF3463	0.61	-1.3
3,504,670	-		GFF3463	0.61	+0.4
3,504,705	-		GFF3463	0.64	+0.4
3,504,712	-		GFF3463	0.64	+0.1
3,504,712	-		GFF3463	0.64	-1.0
3,504,731	-		GFF3463	0.65	+0.2
3,504,742	+		GFF3463	0.66	-2.4
3,504,743	+		GFF3463	0.66	-2.7
3,504,756	-		GFF3463	0.67	-0.5
3,504,756	-		GFF3463	0.67	-0.2
3,504,770	-		GFF3463	0.68	-0.5
3,504,770	-		GFF3463	0.68	-0.8
3,504,770	-		GFF3463	0.68	-1.6
3,504,772	+		GFF3463	0.68	-0.0
3,504,772	-		GFF3463	0.68	-1.5
3,504,772	-		GFF3463	0.68	+0.2
3,504,774	+		GFF3463	0.68	-0.6
3,504,774	+		GFF3463	0.68	-0.3
3,504,774	+		GFF3463	0.68	-0.3
3,504,774	+		GFF3463	0.68	-1.4
3,504,782	-		GFF3463	0.69	+0.5
3,504,782	-		GFF3463	0.69	-0.5
3,504,838	+		GFF3463	0.72	+0.2
3,504,838	+		GFF3463	0.72	+0.3
3,504,844	+		GFF3463	0.73	+0.1
3,504,846	-		GFF3463	0.73	+0.8
3,504,846	-		GFF3463	0.73	+0.1
3,504,852	-		GFF3463	0.73	+0.0
3,504,860	+		GFF3463	0.74	-0.8
3,504,868	-		GFF3463	0.74	-0.8
3,504,871	+		GFF3463	0.75	+1.1
3,504,876	+		GFF3463	0.75	-0.1
3,504,925	+		GFF3463	0.78	-0.7
3,504,933	-		GFF3463	0.79	+0.4
3,504,934	+		GFF3463	0.79	+0.2
3,504,942	-		GFF3463	0.79	-1.0
3,504,942	-		GFF3463	0.79	-1.4
3,504,970	-		GFF3463	0.81	+0.2
3,504,970	-		GFF3463	0.81	-0.3
3,504,984	+		GFF3463	0.82	+0.4
3,504,984	+		GFF3463	0.82	-0.0
3,505,006	+		GFF3463	0.83	+1.6
3,505,026	+		GFF3463	0.85	-1.2
3,505,026	+		GFF3463	0.85	-2.5
3,505,054	-		GFF3463	0.87	-0.2
3,505,091	+		GFF3463	0.89	-0.5
3,505,091	+		GFF3463	0.89	-1.6
3,505,098	-		GFF3463	0.90	-2.4
3,505,099	-		GFF3463	0.90	+1.8
3,505,099	-		GFF3463	0.90	-0.6
3,505,118	-				-0.9
3,505,153	-				-0.2
3,505,153	-				+0.3
3,505,153	-				-0.3
3,505,153	-				-1.4
3,505,153	-				-0.3
3,505,160	-				-2.7
3,505,182	+				-0.7
3,505,187	+				+0.9
3,505,187	+				-0.1
3,505,187	+				-0.6
3,505,190	-				-2.4
3,505,204	-				-1.4
3,505,204	-				-0.4
3,505,232	-				+0.5
3,505,265	-				-1.2
3,505,271	+				-0.3
3,505,279	-				-0.7
3,505,310	-		GFF3464	0.22	-1.5
3,505,310	-		GFF3464	0.22	-1.7
3,505,310	-		GFF3464	0.22	-0.0
3,505,310	-		GFF3464	0.22	-0.3
3,505,312	-		GFF3464	0.23	-0.5
3,505,312	-		GFF3464	0.23	-0.5
3,505,317	+		GFF3464	0.25	+0.3
3,505,322	+		GFF3464	0.27	-0.2
3,505,327	+		GFF3464	0.29	-0.9
3,505,332	+		GFF3464	0.31	-1.6
3,505,332	+		GFF3464	0.31	-0.2
3,505,335	-		GFF3464	0.32	-0.0
3,505,340	-		GFF3464	0.34	-1.2
3,505,340	-		GFF3464	0.34	-0.1
3,505,340	-		GFF3464	0.34	-1.1
3,505,340	-		GFF3464	0.34	-0.7
3,505,340	-		GFF3464	0.34	-0.4
3,505,349	-		GFF3464	0.37	+1.3
3,505,361	+		GFF3464	0.42	-0.9
3,505,369	-		GFF3464	0.45	-0.8
3,505,377	-		GFF3464	0.48	-0.6
3,505,379	+		GFF3464	0.49	-0.0
3,505,379	+		GFF3464	0.49	-0.6
3,505,387	-		GFF3464	0.52	-0.6
3,505,394	+		GFF3464	0.55	-0.2
3,505,446	+		GFF3464	0.75	-0.5
3,505,451	+		GFF3464	0.77	+0.4
3,505,454	-		GFF3464	0.78	+0.3
3,505,459	-		GFF3464	0.80	+0.2
3,505,527	-				-0.2
3,505,541	+				-0.8
3,505,541	+				+0.6
3,505,541	+				+0.7
3,505,542	-				-0.5
3,505,549	-				-1.4
3,505,549	-				-2.5
3,505,549	-				+0.2
3,505,556	+				+1.3
3,505,559	-				-2.5
3,505,559	-				-0.7
3,505,559	-				-0.3
3,505,561	+				-1.0
3,505,561	+				-0.6
3,505,561	-				-1.2
3,505,563	+				+0.0
3,505,568	+				+0.5
3,505,571	-				-0.5
3,505,681	+				+0.2
3,505,727	+				-1.5
3,505,727	+				-1.1
3,505,732	+				-1.4
3,505,735	-				-0.4
3,505,735	-				-1.0
3,505,737	+				+1.3
3,505,740	-				+0.4
3,505,740	-				-1.0
3,505,740	-				-1.8
3,505,745	-				+0.8
3,505,747	-				-0.9
3,505,795	+				+0.2
3,505,821	-				-0.2
3,505,822	-				+0.6
3,505,844	-				-1.5
3,505,847	-				-0.7
3,505,882	-		GFF3465	0.11	-0.4
3,505,887	-		GFF3465	0.12	-1.3
3,505,900	+		GFF3465	0.12	+0.1
3,505,900	+		GFF3465	0.12	-0.8
3,505,902	-		GFF3465	0.12	-1.4
3,505,905	+		GFF3465	0.12	-2.4
3,505,908	-		GFF3465	0.13	-1.4
3,505,913	-		GFF3465	0.13	-3.1
3,505,915	+		GFF3465	0.13	-0.5
3,505,935	+		GFF3465	0.14	+0.4
3,505,939	+		GFF3465	0.14	-1.3
3,505,966	+		GFF3465	0.15	-1.4
3,505,974	-		GFF3465	0.16	+0.6
3,505,982	+		GFF3465	0.16	+0.2
3,505,982	+		GFF3465	0.16	+0.1
3,505,987	+		GFF3465	0.17	-0.3
3,505,990	-		GFF3465	0.17	-0.6
3,505,995	-		GFF3465	0.17	-0.6
3,505,996	-		GFF3465	0.17	+0.1
3,506,003	-		GFF3465	0.17	-0.5
3,506,021	-		GFF3465	0.18	-0.5
3,506,031	+		GFF3465	0.19	-0.8
3,506,037	+		GFF3465	0.19	-1.2
3,506,039	+		GFF3465	0.19	+1.3
3,506,039	+		GFF3465	0.19	+0.2
3,506,047	-		GFF3465	0.20	-0.2
3,506,047	-		GFF3465	0.20	+0.2
3,506,071	-		GFF3465	0.21	-1.4
3,506,089	+		GFF3465	0.22	-1.0
3,506,095	+		GFF3465	0.22	-2.0
3,506,095	+		GFF3465	0.22	+0.4
3,506,095	+		GFF3465	0.22	-0.7
3,506,097	-		GFF3465	0.22	-0.9
3,506,097	-		GFF3465	0.22	+0.6
3,506,103	-		GFF3465	0.22	+0.0
3,506,104	-		GFF3465	0.22	+0.4
3,506,120	+		GFF3465	0.23	+0.1
3,506,251	-		GFF3465	0.30	-1.2
3,506,253	-		GFF3465	0.30	-1.0
3,506,271	-		GFF3465	0.31	-0.4
3,506,275	+		GFF3465	0.31	-1.1
3,506,286	+		GFF3465	0.32	-1.5
3,506,286	+		GFF3465	0.32	-1.8
3,506,290	+		GFF3465	0.32	-0.2
3,506,290	+		GFF3465	0.32	+0.1
3,506,290	+		GFF3465	0.32	+0.2
3,506,290	+		GFF3465	0.32	-0.4
3,506,290	+		GFF3465	0.32	-0.4
3,506,298	-		GFF3465	0.32	-0.4
3,506,298	-		GFF3465	0.32	+1.4
3,506,298	-		GFF3465	0.32	-0.4
3,506,298	-		GFF3465	0.32	-0.8
3,506,298	-		GFF3465	0.32	-1.6
3,506,298	-		GFF3465	0.32	-2.2
3,506,341	-		GFF3465	0.34	-0.9
3,506,341	-		GFF3465	0.34	+1.3
3,506,341	-		GFF3465	0.34	-0.7
3,506,346	-		GFF3465	0.35	-2.5
3,506,353	-		GFF3465	0.35	-1.9
3,506,353	-		GFF3465	0.35	-0.3
3,506,354	-		GFF3465	0.35	+0.1
3,506,354	-		GFF3465	0.35	-0.5
3,506,367	+		GFF3465	0.36	+0.1
3,506,367	+		GFF3465	0.36	+1.6
3,506,367	+		GFF3465	0.36	-1.5
3,506,367	+		GFF3465	0.36	-1.0
3,506,375	-		GFF3465	0.36	-0.1
3,506,375	-		GFF3465	0.36	-0.4
3,506,375	-		GFF3465	0.36	-0.3
3,506,375	-		GFF3465	0.36	+0.9
3,506,380	-		GFF3465	0.36	+2.0
3,506,385	-		GFF3465	0.37	+0.2
3,506,386	-		GFF3465	0.37	-0.2
3,506,391	+		GFF3465	0.37	-0.7
3,506,403	-		GFF3465	0.37	-1.0
3,506,418	+		GFF3465	0.38	-1.0
3,506,436	-		GFF3465	0.39	-1.4
3,506,441	-		GFF3465	0.39	-0.1
3,506,464	+		GFF3465	0.41	-2.0
3,506,472	-		GFF3465	0.41	-0.4
3,506,475	+		GFF3465	0.41	-1.8
3,506,478	-		GFF3465	0.41	-0.4
3,506,489	+		GFF3465	0.42	-0.1
3,506,495	-		GFF3465	0.42	-0.8
3,506,496	+		GFF3465	0.42	-1.2
3,506,504	-		GFF3465	0.43	-0.5
3,506,534	-		GFF3465	0.44	-0.2
3,506,534	-		GFF3465	0.44	-0.5
3,506,536	+		GFF3465	0.44	+0.2
3,506,536	+		GFF3465	0.44	+0.6
3,506,544	-		GFF3465	0.45	-1.6
3,506,547	+		GFF3465	0.45	-0.8
3,506,555	-		GFF3465	0.45	-0.3
3,506,555	-		GFF3465	0.45	-0.8
3,506,559	-		GFF3465	0.45	-1.4
3,506,631	+		GFF3465	0.49	-0.4
3,506,633	-		GFF3465	0.49	-0.6
3,506,633	-		GFF3465	0.49	-1.8
3,506,638	-		GFF3465	0.49	-1.0
3,506,648	+		GFF3465	0.50	-1.6
3,506,648	+		GFF3465	0.50	+0.7
3,506,658	+		GFF3465	0.50	-2.9
3,506,658	+		GFF3465	0.50	-2.1
3,506,663	+		GFF3465	0.51	-0.2
3,506,663	+		GFF3465	0.51	+0.7
3,506,666	-		GFF3465	0.51	-1.8
3,506,666	-		GFF3465	0.51	-2.2
3,506,703	+		GFF3465	0.53	-0.3
3,506,720	-		GFF3465	0.53	-1.2
3,506,737	-		GFF3465	0.54	+0.5
3,506,744	-		GFF3465	0.55	-0.4
3,506,749	-		GFF3465	0.55	-0.6
3,506,749	-		GFF3465	0.55	-1.4
3,506,749	-		GFF3465	0.55	+0.3
3,506,764	+		GFF3465	0.56	-0.4
3,506,783	+		GFF3465	0.57	-1.3
3,506,784	-		GFF3465	0.57	+0.4
3,506,791	-		GFF3465	0.57	-1.9
3,506,791	-		GFF3465	0.57	+0.2
3,506,811	+		GFF3465	0.58	+0.3
3,506,815	-		GFF3465	0.58	+0.1
3,506,815	-		GFF3465	0.58	+0.2
3,506,815	-		GFF3465	0.58	-0.2
3,506,844	+		GFF3465	0.60	-0.1
3,506,867	-		GFF3465	0.61	+0.4
3,506,875	-		GFF3465	0.61	+0.1
3,506,880	+		GFF3465	0.61	-1.7
3,506,913	+		GFF3465	0.63	+0.1
3,506,921	-		GFF3465	0.63	+1.4
3,506,921	-		GFF3465	0.63	+1.0
3,506,921	-		GFF3465	0.63	+0.5
3,506,962	+		GFF3465	0.66	+0.2
3,506,962	+		GFF3465	0.66	+1.1
3,506,972	+		GFF3465	0.66	-0.1
3,506,979	+		GFF3465	0.66	-0.8
3,506,990	-		GFF3465	0.67	+1.4
3,507,027	+		GFF3465	0.69	+1.1
3,507,027	+		GFF3465	0.69	-2.0
3,507,027	+		GFF3465	0.69	-1.8
3,507,027	+		GFF3465	0.69	-2.4
3,507,027	+		GFF3465	0.69	-1.8
3,507,027	+		GFF3465	0.69	-0.9
3,507,027	+		GFF3465	0.69	+1.0
3,507,035	-		GFF3465	0.69	-0.8
3,507,035	-		GFF3465	0.69	+0.8
3,507,035	-		GFF3465	0.69	+0.7
3,507,035	-		GFF3465	0.69	+0.8
3,507,035	-		GFF3465	0.69	-2.6
3,507,035	-		GFF3465	0.69	-0.5
3,507,035	-		GFF3465	0.69	-0.0
3,507,058	-		GFF3465	0.70	+0.7
3,507,079	-		GFF3465	0.71	-1.3
3,507,092	+		GFF3465	0.72	-0.2
3,507,092	+		GFF3465	0.72	-0.9
3,507,100	+		GFF3465	0.72	+1.4
3,507,100	+		GFF3465	0.72	-0.6
3,507,100	+		GFF3465	0.72	-2.0
3,507,100	-		GFF3465	0.72	-0.3
3,507,108	-		GFF3465	0.73	-0.6
3,507,108	-		GFF3465	0.73	-1.4
3,507,113	-		GFF3465	0.73	-0.7
3,507,115	+		GFF3465	0.73	-1.7
3,507,123	-		GFF3465	0.74	+1.5
3,507,158	+		GFF3465	0.75	+0.1
3,507,158	+		GFF3465	0.75	+0.8
3,507,178	+		GFF3465	0.76	-0.1
3,507,186	-		GFF3465	0.77	-0.5
3,507,186	-		GFF3465	0.77	-0.5
3,507,193	-		GFF3465	0.77	-1.4
3,507,214	-		GFF3465	0.78	-0.1
3,507,215	+		GFF3465	0.78	-0.2
3,507,219	-		GFF3465	0.78	-1.0
3,507,221	-		GFF3465	0.79	-0.0
3,507,231	-		GFF3465	0.79	-2.1
3,507,234	+		GFF3465	0.79	-1.5
3,507,252	-		GFF3465	0.80	+0.7
3,507,292	+		GFF3465	0.82	-0.4
3,507,318	-		GFF3465	0.83	-0.3
3,507,352	+		GFF3465	0.85	-0.0
3,507,381	+		GFF3465	0.87	+1.3
3,507,399	-		GFF3465	0.88	+0.2
3,507,422	+		GFF3465	0.89	-1.5
3,507,436	+		GFF3465	0.89	+1.0
3,507,456	+				-1.2
3,507,456	+				-1.0
3,507,456	+				+0.8
3,507,458	+				-0.8
3,507,464	-				-2.5
3,507,464	-				+0.3
3,507,464	-				+0.4
3,507,466	-				-0.3
3,507,517	+				-0.8
3,507,519	+				-0.8
3,507,519	+				+0.9
3,507,536	-				-1.5
3,507,547	+				-2.4
3,507,555	+				+0.0
3,507,573	+				+0.4
3,507,581	+				-1.2
3,507,581	-				+0.7
3,507,586	+				-0.3
3,507,604	+				+1.3
3,507,612	-				-1.6
3,507,614	+				-0.8
3,507,620	-				+0.1
3,507,641	+				+1.0
3,507,647	-				+0.0
3,507,647	-				-0.4
3,507,664	+				-2.3
3,507,672	-				-1.2
3,507,674	+				+0.4
3,507,684	+				-2.3
3,507,692	-				-1.2
3,507,707	+				-0.7
3,507,711	-				+1.1
3,507,713	+				+0.8
3,507,713	+				+1.0
3,507,713	+				-1.1
3,507,713	+				-1.7
3,507,717	+				-0.8
3,507,717	+				-1.7
3,507,717	+				+0.6
3,507,717	+				+0.8
3,507,717	+				-0.8
3,507,717	+				+0.0
3,507,725	-				-0.1
3,507,725	-				+0.1
3,507,725	-				+0.4
3,507,725	-				-0.3
3,507,725	-				-1.6
3,507,727	+				-0.8
3,507,733	-				-1.2
3,507,735	+				-0.7
3,507,735	+				+0.0
3,507,737	-				-1.3
3,507,743	-				+1.2
3,507,746	+				+0.0
3,507,770	+				-1.4
3,507,770	+				-1.3
3,507,773	-				-1.0
3,507,775	+				-0.1
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