Strain Fitness in Sphingobium sp. HT1-2 around GFF3443

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,482,016	-		GFF3442	0.54	+0.3
3,482,028	+		GFF3442	0.55	+0.3
3,482,044	+		GFF3442	0.56	+0.4
3,482,070	+		GFF3442	0.57	-0.1
3,482,070	+		GFF3442	0.57	-0.4
3,482,070	+		GFF3442	0.57	-1.5
3,482,073	-		GFF3442	0.57	+0.2
3,482,078	-		GFF3442	0.57	+0.2
3,482,078	-		GFF3442	0.57	+0.6
3,482,085	-		GFF3442	0.57	-1.1
3,482,095	-		GFF3442	0.58	-1.0
3,482,112	-		GFF3442	0.59	-1.7
3,482,121	+		GFF3442	0.59	-0.7
3,482,132	+		GFF3442	0.60	-0.3
3,482,134	+		GFF3442	0.60	+0.4
3,482,134	+		GFF3442	0.60	-0.8
3,482,140	-		GFF3442	0.60	-1.1
3,482,142	-		GFF3442	0.60	-0.4
3,482,167	+		GFF3442	0.61	+0.1
3,482,167	+		GFF3442	0.61	+0.0
3,482,167	+		GFF3442	0.61	-0.0
3,482,167	+		GFF3442	0.61	-0.7
3,482,167	+		GFF3442	0.61	-2.2
3,482,167	+		GFF3442	0.61	-1.0
3,482,175	-		GFF3442	0.62	-0.4
3,482,175	-		GFF3442	0.62	-0.7
3,482,175	-		GFF3442	0.62	+0.4
3,482,177	+		GFF3442	0.62	-2.6
3,482,218	+		GFF3442	0.64	-1.0
3,482,250	-		GFF3442	0.65	-1.3
3,482,255	-		GFF3442	0.65	-1.5
3,482,255	-		GFF3442	0.65	+0.5
3,482,255	-		GFF3442	0.65	+0.7
3,482,266	-		GFF3442	0.66	-0.1
3,482,274	+		GFF3442	0.66	-0.4
3,482,274	+		GFF3442	0.66	-1.6
3,482,279	+		GFF3442	0.67	+0.9
3,482,282	-		GFF3442	0.67	-0.8
3,482,292	-		GFF3442	0.67	+0.2
3,482,292	-		GFF3442	0.67	+0.0
3,482,306	-		GFF3442	0.68	-2.0
3,482,308	+		GFF3442	0.68	+0.3
3,482,316	-		GFF3442	0.68	-1.6
3,482,317	+		GFF3442	0.68	-0.1
3,482,325	-		GFF3442	0.69	-1.4
3,482,328	+		GFF3442	0.69	-0.4
3,482,328	+		GFF3442	0.69	-0.5
3,482,328	+		GFF3442	0.69	-1.4
3,482,328	+		GFF3442	0.69	-1.8
3,482,336	-		GFF3442	0.69	+0.8
3,482,336	-		GFF3442	0.69	+0.8
3,482,336	-		GFF3442	0.69	-0.5
3,482,355	-		GFF3442	0.70	+0.5
3,482,363	+		GFF3442	0.70	+1.3
3,482,371	-		GFF3442	0.71	+1.1
3,482,371	-		GFF3442	0.71	-0.3
3,482,379	-		GFF3442	0.71	+0.3
3,482,399	-		GFF3442	0.72	-0.8
3,482,403	+		GFF3442	0.72	-0.3
3,482,403	+		GFF3442	0.72	+1.0
3,482,403	+		GFF3442	0.72	+0.7
3,482,403	+		GFF3442	0.72	+0.5
3,482,409	-		GFF3442	0.73	-0.4
3,482,411	-		GFF3442	0.73	-0.1
3,482,411	-		GFF3442	0.73	+0.8
3,482,411	-		GFF3442	0.73	-0.9
3,482,413	+		GFF3442	0.73	-1.1
3,482,413	+		GFF3442	0.73	-1.1
3,482,413	+		GFF3442	0.73	+1.0
3,482,413	+		GFF3442	0.73	-1.3
3,482,429	+		GFF3442	0.74	-0.1
3,482,431	+		GFF3442	0.74	-0.2
3,482,439	-		GFF3442	0.74	-0.4
3,482,439	-		GFF3442	0.74	-0.3
3,482,460	+		GFF3442	0.75	+0.5
3,482,468	-		GFF3442	0.75	-0.8
3,482,468	-		GFF3442	0.75	+0.7
3,482,478	-		GFF3442	0.76	+0.6
3,482,503	-		GFF3442	0.77	-0.7
3,482,557	+		GFF3442	0.79	-0.0
3,482,560	-		GFF3442	0.80	-1.7
3,482,560	-		GFF3442	0.80	+1.0
3,482,560	-		GFF3442	0.80	+0.4
3,482,565	-		GFF3442	0.80	-0.2
3,482,565	-		GFF3442	0.80	-2.5
3,482,571	-		GFF3442	0.80	-0.8
3,482,571	-		GFF3442	0.80	+1.6
3,482,573	+		GFF3442	0.80	-0.5
3,482,578	+		GFF3442	0.80	+0.1
3,482,581	-		GFF3442	0.81	+0.9
3,482,581	-		GFF3442	0.81	-0.2
3,482,581	-		GFF3442	0.81	-1.9
3,482,581	-		GFF3442	0.81	+0.7
3,482,581	-		GFF3442	0.81	+1.3
3,482,583	+		GFF3442	0.81	-0.9
3,482,583	+		GFF3442	0.81	-1.1
3,482,583	+		GFF3442	0.81	+1.4
3,482,583	+		GFF3442	0.81	-2.2
3,482,586	-		GFF3442	0.81	-0.4
3,482,586	-		GFF3442	0.81	+0.3
3,482,588	+		GFF3442	0.81	-0.2
3,482,589	+		GFF3442	0.81	-0.5
3,482,589	+		GFF3442	0.81	+0.7
3,482,591	-		GFF3442	0.81	-1.1
3,482,594	+		GFF3442	0.81	+0.1
3,482,594	+		GFF3442	0.81	+0.3
3,482,602	-		GFF3442	0.82	-0.6
3,482,609	+		GFF3442	0.82	+0.4
3,482,611	+		GFF3442	0.82	-0.2
3,482,611	+		GFF3442	0.82	-1.0
3,482,612	-		GFF3442	0.82	+0.6
3,482,617	-		GFF3442	0.82	-0.9
3,482,619	-		GFF3442	0.82	-2.0
3,482,627	+		GFF3442	0.83	+0.0
3,482,635	+		GFF3442	0.83	-0.0
3,482,635	+		GFF3442	0.83	-0.5
3,482,643	-		GFF3442	0.83	+0.3
3,482,645	+		GFF3442	0.84	-1.6
3,482,645	+		GFF3442	0.84	+0.4
3,482,653	-		GFF3442	0.84	-1.4
3,482,653	-		GFF3442	0.84	+1.1
3,482,675	+		GFF3442	0.85	-0.5
3,482,701	-		GFF3442	0.86	+1.5
3,482,781	+		GFF3442	0.90	-0.2
3,482,783	+				-0.1
3,482,831	+				-0.4
3,482,831	+				-0.8
3,482,838	+				-1.4
3,482,839	-				-0.0
3,482,839	-				+0.5
3,482,877	-				-1.8
3,482,879	+				+0.2
3,482,879	+				-2.1
3,482,884	+				-1.2
3,482,887	-				-1.1
3,482,900	+				-1.6
3,482,904	+				-0.2
3,482,935	-				+0.5
3,482,941	+				-0.9
3,482,949	-				-1.3
3,482,949	-				+0.6
3,482,959	+				-0.3
3,482,959	+				-1.2
3,482,959	+				-1.4
3,482,959	+				+0.1
3,482,967	-				-2.2
3,482,977	-				-0.1
3,482,977	-				-3.0
3,482,983	+				-0.3
3,483,001	-				-2.0
3,483,052	-				-1.5
3,483,057	+				-1.3
3,483,059	+				-2.6
3,483,064	+				-1.9
3,483,064	+				+0.5
3,483,064	+				-0.4
3,483,067	-				-0.2
3,483,067	-				-1.6
3,483,067	-				-1.9
3,483,067	-				-0.9
3,483,067	-				-1.5
3,483,069	+		GFF3443	0.10	+0.2
3,483,069	+		GFF3443	0.10	-0.4
3,483,069	+		GFF3443	0.10	+0.1
3,483,071	-		GFF3443	0.10	-0.9
3,483,072	-		GFF3443	0.10	+0.6
3,483,072	-		GFF3443	0.10	+0.3
3,483,077	-		GFF3443	0.11	-0.3
3,483,077	-		GFF3443	0.11	-0.4
3,483,085	+		GFF3443	0.12	+0.6
3,483,085	+		GFF3443	0.12	-2.4
3,483,135	+		GFF3443	0.19	+0.3
3,483,135	-		GFF3443	0.19	-0.4
3,483,154	+		GFF3443	0.22	-0.3
3,483,154	+		GFF3443	0.22	-2.8
3,483,154	+		GFF3443	0.22	-2.0
3,483,162	-		GFF3443	0.23	-0.2
3,483,162	-		GFF3443	0.23	-0.9
3,483,162	-		GFF3443	0.23	-1.5
3,483,162	-		GFF3443	0.23	-0.7
3,483,173	+		GFF3443	0.24	+0.1
3,483,173	+		GFF3443	0.24	-1.3
3,483,176	-		GFF3443	0.25	-0.3
3,483,178	+		GFF3443	0.25	-0.1
3,483,181	+		GFF3443	0.25	-0.9
3,483,181	-		GFF3443	0.25	-1.6
3,483,189	+		GFF3443	0.26	-0.7
3,483,189	+		GFF3443	0.26	-1.7
3,483,189	+		GFF3443	0.26	-0.9
3,483,194	+		GFF3443	0.27	-0.0
3,483,197	-		GFF3443	0.28	-0.2
3,483,197	-		GFF3443	0.28	-0.8
3,483,197	-		GFF3443	0.28	+0.6
3,483,197	-		GFF3443	0.28	-1.4
3,483,206	-		GFF3443	0.29	+0.7
3,483,216	-		GFF3443	0.30	-1.3
3,483,232	+		GFF3443	0.32	-1.4
3,483,239	+		GFF3443	0.33	-0.7
3,483,239	+		GFF3443	0.33	+0.1
3,483,239	+		GFF3443	0.33	-0.5
3,483,242	-		GFF3443	0.34	-1.2
3,483,247	-		GFF3443	0.34	-2.2
3,483,247	-		GFF3443	0.34	+1.5
3,483,252	+		GFF3443	0.35	+0.2
3,483,252	+		GFF3443	0.35	+0.3
3,483,256	+		GFF3443	0.36	-1.0
3,483,260	-		GFF3443	0.36	-1.5
3,483,264	-		GFF3443	0.37	-0.2
3,483,266	+		GFF3443	0.37	-1.6
3,483,287	-		GFF3443	0.40	-1.2
3,483,287	-		GFF3443	0.40	-0.2
3,483,287	-		GFF3443	0.40	+0.3
3,483,289	+		GFF3443	0.40	+0.8
3,483,297	-		GFF3443	0.41	-0.8
3,483,297	-		GFF3443	0.41	-0.7
3,483,302	-		GFF3443	0.42	-0.3
3,483,304	+		GFF3443	0.42	+0.6
3,483,318	+		GFF3443	0.44	+1.4
3,483,350	+		GFF3443	0.49	-0.4
3,483,350	+		GFF3443	0.49	-0.0
3,483,350	+		GFF3443	0.49	-1.1
3,483,352	+		GFF3443	0.49	-1.3
3,483,359	-		GFF3443	0.50	+0.1
3,483,359	-		GFF3443	0.50	-2.6
3,483,367	+		GFF3443	0.51	+0.5
3,483,439	+		GFF3443	0.61	+1.1
3,483,442	-		GFF3443	0.61	+0.3
3,483,444	+		GFF3443	0.61	+0.5
3,483,452	-		GFF3443	0.63	-1.1
3,483,471	-		GFF3443	0.65	-0.6
3,483,477	+		GFF3443	0.66	+0.3
3,483,482	+		GFF3443	0.67	+1.2
3,483,482	+		GFF3443	0.67	+1.6
3,483,485	-		GFF3443	0.67	-0.0
3,483,516	+		GFF3443	0.71	-1.8
3,483,516	+		GFF3443	0.71	+0.8
3,483,516	+		GFF3443	0.71	+0.5
3,483,524	-		GFF3443	0.72	-0.5
3,483,530	+		GFF3443	0.73	+0.6
3,483,530	+		GFF3443	0.73	-1.6
3,483,530	+		GFF3443	0.73	-0.2
3,483,541	+		GFF3443	0.75	+0.4
3,483,560	+		GFF3443	0.77	-0.2
3,483,580	+		GFF3443	0.80	+0.9
3,483,595	-		GFF3443	0.82	+0.1
3,483,601	-		GFF3443	0.83	-1.8
3,483,611	-		GFF3443	0.84	-0.1
3,483,628	+		GFF3443	0.87	+1.4
3,483,630	+		GFF3443	0.87	-0.3
3,483,633	-		GFF3443	0.87	-0.5
3,483,636	-		GFF3443	0.88	-0.6
3,483,677	+				+0.3
3,483,677	+				-0.2
3,483,677	+				+0.6
3,483,677	+				-1.8
3,483,677	+				-1.8
3,483,677	+				-1.3
3,483,677	+				-0.3
3,483,677	+				+0.7
3,483,677	+				-0.8
3,483,677	+				+0.6
3,483,677	+				+1.0
3,483,677	-				+0.3
3,483,685	-				+0.5
3,483,685	-				-0.9
3,483,685	-				+0.1
3,483,685	-				-2.1
3,483,685	-				-1.1
3,483,685	-				-0.7
3,483,685	-				+0.1
3,483,685	-				+0.1
3,483,722	+				+0.7
3,483,722	+				+1.4
3,483,730	-				-0.1
3,483,771	+				+1.2
3,483,771	+				-2.4
3,483,771	+				+0.3
3,483,771	+				+0.4
3,483,771	+				-0.1
3,483,771	+				-0.3
3,483,771	+				+0.1
3,483,771	+				-2.3
3,483,771	+				+0.2
3,483,771	+				+0.9
3,483,779	-				+0.0
3,483,779	-				-0.0
3,483,779	-				-2.4
3,483,779	-				-1.4
3,483,779	-				+0.4
3,483,779	-				+0.8
3,483,779	-				-0.0
3,483,779	-				+0.1
3,483,779	-				-1.7
3,483,779	-				-0.9
3,483,798	+				+0.4
3,483,804	-				-1.5
3,483,815	+				-2.1
3,483,823	-				-1.9
3,483,823	-				+0.9
3,483,823	-				-0.3
3,483,823	-				-0.5
3,483,857	-				+0.7
3,483,867	-				-0.9
3,483,889	+				+0.3
3,483,897	-				-2.3
3,483,919	-				-2.0
3,483,951	+				+0.2
3,483,951	+				+0.8
3,483,959	-				-0.6
3,483,959	-				-1.2
3,483,969	-				-1.2
3,484,032	-		GFF3444	0.15	+0.4
3,484,032	-		GFF3444	0.15	-0.3
3,484,040	+		GFF3444	0.15	+0.6
3,484,070	+		GFF3444	0.18	+1.5
3,484,071	+		GFF3444	0.18	-0.6
3,484,079	-		GFF3444	0.18	-0.9
3,484,080	+		GFF3444	0.18	+0.2
3,484,088	-		GFF3444	0.19	+0.3
3,484,129	+		GFF3444	0.22	-0.8
3,484,130	-		GFF3444	0.22	-0.4
3,484,174	+		GFF3444	0.26	-0.6
3,484,182	-		GFF3444	0.26	-3.0
3,484,182	-		GFF3444	0.26	+0.0
3,484,182	-		GFF3444	0.26	-1.3
3,484,184	+		GFF3444	0.26	-0.2
3,484,213	-		GFF3444	0.29	+0.8
3,484,242	-		GFF3444	0.31	-0.8
3,484,245	+		GFF3444	0.31	+1.9
3,484,253	-		GFF3444	0.32	+0.4
3,484,253	-		GFF3444	0.32	-0.3
3,484,255	+		GFF3444	0.32	-0.0
3,484,272	+		GFF3444	0.33	-0.2
3,484,280	-		GFF3444	0.34	+0.3
3,484,280	-		GFF3444	0.34	+1.2
3,484,280	-		GFF3444	0.34	-0.2
3,484,280	-		GFF3444	0.34	+1.2
3,484,368	+		GFF3444	0.41	-0.6
3,484,376	-		GFF3444	0.41	-0.2
3,484,376	-		GFF3444	0.41	-1.5
3,484,381	+		GFF3444	0.42	-1.6
3,484,389	-		GFF3444	0.42	+0.2
3,484,405	+		GFF3444	0.43	+0.1
3,484,492	-		GFF3444	0.50	-0.9
3,484,494	+		GFF3444	0.50	-1.6
3,484,494	+		GFF3444	0.50	+0.5
3,484,537	-		GFF3444	0.54	-1.5
3,484,537	-		GFF3444	0.54	-1.8
3,484,562	+		GFF3444	0.56	+0.0
3,484,562	+		GFF3444	0.56	-0.7
3,484,562	-		GFF3444	0.56	-0.2
3,484,564	-		GFF3444	0.56	-1.1
3,484,570	-		GFF3444	0.56	-0.1
3,484,570	-		GFF3444	0.56	+0.5
3,484,588	+		GFF3444	0.58	+0.8
3,484,588	+		GFF3444	0.58	-0.5
3,484,596	-		GFF3444	0.58	-0.4
3,484,609	+		GFF3444	0.59	-1.8
3,484,622	-		GFF3444	0.60	-0.6
3,484,633	+		GFF3444	0.61	-1.6
3,484,641	-		GFF3444	0.62	-0.4
3,484,644	+		GFF3444	0.62	-0.8
3,484,649	+		GFF3444	0.62	-1.1
3,484,652	-		GFF3444	0.62	-1.4
3,484,662	-		GFF3444	0.63	+0.5
3,484,687	-		GFF3444	0.65	-0.4
3,484,719	-		GFF3444	0.68	+0.3