Strain Fitness in Sphingobium sp. HT1-2 around GFF3441

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,479,327	+		GFF3439	0.33	-1.6
3,479,327	+		GFF3439	0.33	-1.8
3,479,329	-		GFF3439	0.34	-1.7
3,479,335	-		GFF3439	0.37	-1.3
3,479,335	-		GFF3439	0.37	+0.0
3,479,335	-		GFF3439	0.37	-1.3
3,479,375	+		GFF3439	0.54	-2.7
3,479,381	+		GFF3439	0.56	-1.6
3,479,432	+		GFF3439	0.78	-2.0
3,479,471	+				-0.9
3,479,476	+				+0.4
3,479,476	+				-1.1
3,479,483	+				+0.2
3,479,483	+				+0.9
3,479,483	+				-0.7
3,479,483	+				-0.6
3,479,484	-				-2.0
3,479,491	-				-2.4
3,479,491	-				-0.2
3,479,491	-				-0.0
3,479,491	-				-2.9
3,479,560	-		GFF3440	0.11	-2.5
3,479,562	+		GFF3440	0.11	-2.2
3,479,562	+		GFF3440	0.11	-1.5
3,479,562	+		GFF3440	0.11	-2.2
3,479,562	+		GFF3440	0.11	-1.8
3,479,570	-		GFF3440	0.12	-1.2
3,479,570	-		GFF3440	0.12	-2.8
3,479,570	-		GFF3440	0.12	-1.3
3,479,570	-		GFF3440	0.12	-1.5
3,479,570	-		GFF3440	0.12	-1.2
3,479,570	-		GFF3440	0.12	-2.2
3,479,574	+		GFF3440	0.13	-1.7
3,479,581	-		GFF3440	0.14	-2.2
3,479,592	+		GFF3440	0.16	-1.0
3,479,600	-		GFF3440	0.17	-1.8
3,479,610	-		GFF3440	0.18	-1.4
3,479,700	-		GFF3440	0.32	-2.5
3,479,712	+		GFF3440	0.33	-2.4
3,479,732	+		GFF3440	0.36	-2.5
3,479,751	+		GFF3440	0.39	-2.2
3,479,758	+		GFF3440	0.40	-2.7
3,479,758	-		GFF3440	0.40	-2.5
3,479,759	+		GFF3440	0.40	-1.4
3,479,777	+		GFF3440	0.43	-2.3
3,479,805	-		GFF3440	0.47	-1.2
3,479,834	+		GFF3440	0.52	-1.4
3,479,872	+		GFF3440	0.57	-3.1
3,479,880	-		GFF3440	0.58	-1.4
3,479,880	-		GFF3440	0.58	-1.4
3,479,891	+		GFF3440	0.60	-2.3
3,479,910	+		GFF3440	0.63	-1.9
3,479,949	-		GFF3440	0.69	-1.8
3,479,963	+		GFF3440	0.71	-2.4
3,479,971	-		GFF3440	0.72	-1.8
3,479,983	+		GFF3440	0.74	-2.8
3,479,983	+		GFF3440	0.74	-1.4
3,479,983	+		GFF3440	0.74	-1.3
3,479,983	+		GFF3440	0.74	-0.9
3,479,983	+		GFF3440	0.74	-2.2
3,479,988	+		GFF3440	0.74	-1.2
3,479,991	-		GFF3440	0.75	-2.0
3,479,991	-		GFF3440	0.75	-1.1
3,479,991	-		GFF3440	0.75	-2.6
3,479,991	-		GFF3440	0.75	-2.9
3,480,005	+		GFF3440	0.77	-2.2
3,480,006	-		GFF3440	0.77	-2.2
3,480,011	+		GFF3440	0.78	-2.2
3,480,050	+		GFF3440	0.84	-1.3
3,480,050	+		GFF3440	0.84	-2.0
3,480,058	-		GFF3440	0.85	-2.3
3,480,058	-		GFF3440	0.85	-1.6
3,480,058	-		GFF3440	0.85	-2.3
3,480,058	-		GFF3440	0.85	-1.5
3,480,063	-		GFF3440	0.85	-1.3
3,480,063	-		GFF3440	0.85	-1.9
3,480,064	+		GFF3440	0.86	-0.6
3,480,064	+		GFF3440	0.86	-1.6
3,480,072	-		GFF3440	0.87	-2.8
3,480,105	+				-1.5
3,480,105	-				-2.0
3,480,105	-				-2.2
3,480,123	+				-0.2
3,480,133	+				-0.3
3,480,133	+				+1.5
3,480,133	+				+0.9
3,480,133	+				-0.8
3,480,134	+				-2.9
3,480,141	-				+0.2
3,480,142	-				-1.3
3,480,151	-				+0.7
3,480,162	-				-0.2
3,480,162	-				-0.2
3,480,248	+				-1.2
3,480,248	+				-1.0
3,480,248	+				-1.8
3,480,256	-				-0.4
3,480,269	+				+0.8
3,480,295	+				-2.2
3,480,303	-				-1.2
3,480,303	-				-0.1
3,480,303	-				-0.3
3,480,309	-				+1.1
3,480,333	+				-0.2
3,480,342	-				+1.1
3,480,348	-				-1.8
3,480,433	+		GFF3441	0.23	+1.1
3,480,433	+		GFF3441	0.23	+0.3
3,480,433	+		GFF3441	0.23	-1.2
3,480,441	-		GFF3441	0.25	+0.9
3,480,441	-		GFF3441	0.25	-0.3
3,480,441	-		GFF3441	0.25	-0.6
3,480,441	-		GFF3441	0.25	+0.0
3,480,483	+		GFF3441	0.33	+0.5
3,480,483	+		GFF3441	0.33	+0.5
3,480,517	+		GFF3441	0.39	+0.0
3,480,517	+		GFF3441	0.39	+0.6
3,480,517	-		GFF3441	0.39	-1.0
3,480,524	+		GFF3441	0.40	-1.7
3,480,549	+		GFF3441	0.45	-0.5
3,480,559	-		GFF3441	0.47	+0.9
3,480,562	+		GFF3441	0.47	-1.3
3,480,562	+		GFF3441	0.47	-0.7
3,480,570	-		GFF3441	0.49	+0.4
3,480,642	-		GFF3441	0.63	+1.1
3,480,687	+		GFF3441	0.71	-1.0
3,480,688	+		GFF3441	0.71	+0.6
3,480,688	+		GFF3441	0.71	-1.5
3,480,722	-		GFF3441	0.78	-2.9
3,480,723	+		GFF3441	0.78	-1.5
3,480,731	-		GFF3441	0.79	-0.1
3,480,751	-		GFF3441	0.83	-0.5
3,480,794	+				-0.2
3,480,802	-				-1.0
3,480,802	-				-0.0
3,480,804	+				+0.8
3,480,804	+				-0.5
3,480,804	+				+0.8
3,480,809	-				-1.2
3,480,810	+				+0.8
3,480,812	-				-0.0
3,480,812	-				-0.2
3,480,812	-				-0.4
3,480,812	-				+0.4
3,480,833	-				-0.2
3,480,842	+				-0.9
3,480,848	+				+0.5
3,480,848	+				+0.2
3,480,848	+				-1.7
3,480,848	+				+0.1
3,480,849	+				-1.4
3,480,856	-				+0.2
3,480,856	-				-0.1
3,480,862	+				+0.0
3,480,895	+				-1.0
3,480,900	+				-0.5
3,480,900	+				-0.6
3,480,900	+				-0.2
3,480,900	+				-3.2
3,480,900	+				+0.4
3,480,900	+				-2.1
3,480,900	+				-0.7
3,480,900	+				-0.3
3,480,905	+				-2.0
3,480,908	-				-1.0
3,480,908	-				-1.5
3,480,974	-				-0.8
3,480,992	-				+0.0
3,480,993	+				+0.5
3,480,995	+				-2.3
3,480,999	-				-0.1
3,480,999	-				+1.6
3,481,005	+				+0.3
3,481,006	+				-0.9
3,481,009	-				+0.4
3,481,013	-				-0.8
3,481,014	-				-1.2
3,481,014	-				-0.6
3,481,065	+				-0.6
3,481,065	+				+0.0
3,481,073	-		GFF3442	0.10	-1.2
3,481,073	-		GFF3442	0.10	+0.1
3,481,073	-		GFF3442	0.10	-0.4
3,481,073	-		GFF3442	0.10	-0.1
3,481,073	-		GFF3442	0.10	-1.0
3,481,073	-		GFF3442	0.10	-1.3
3,481,073	-		GFF3442	0.10	-0.2
3,481,077	+		GFF3442	0.10	-0.3
3,481,083	-		GFF3442	0.11	-0.9
3,481,083	-		GFF3442	0.11	-1.2
3,481,083	-		GFF3442	0.11	-0.5
3,481,084	-		GFF3442	0.11	-0.4
3,481,084	-		GFF3442	0.11	+0.4
3,481,084	-		GFF3442	0.11	-0.8
3,481,086	+		GFF3442	0.11	+0.3
3,481,094	-		GFF3442	0.11	+0.7
3,481,104	-		GFF3442	0.12	-1.7
3,481,120	+		GFF3442	0.12	-2.2
3,481,128	+		GFF3442	0.13	-2.0
3,481,128	-		GFF3442	0.13	+0.7
3,481,128	-		GFF3442	0.13	-0.4
3,481,128	-		GFF3442	0.13	-0.3
3,481,131	-		GFF3442	0.13	+0.3
3,481,141	-		GFF3442	0.13	-1.3
3,481,146	+		GFF3442	0.14	-1.4
3,481,146	+		GFF3442	0.14	-1.0
3,481,159	+		GFF3442	0.14	-1.1
3,481,164	+		GFF3442	0.15	+1.1
3,481,164	+		GFF3442	0.15	-0.4
3,481,164	+		GFF3442	0.15	+0.9
3,481,164	+		GFF3442	0.15	-0.6
3,481,165	-		GFF3442	0.15	-0.1
3,481,167	-		GFF3442	0.15	-0.5
3,481,172	-		GFF3442	0.15	+0.8
3,481,172	-		GFF3442	0.15	-0.5
3,481,172	-		GFF3442	0.15	-0.0
3,481,172	-		GFF3442	0.15	-0.7
3,481,172	-		GFF3442	0.15	+0.6
3,481,172	-		GFF3442	0.15	+0.2
3,481,172	-		GFF3442	0.15	+0.9
3,481,172	-		GFF3442	0.15	+1.7
3,481,172	-		GFF3442	0.15	-0.9
3,481,172	-		GFF3442	0.15	+1.9
3,481,200	+		GFF3442	0.16	-0.4
3,481,213	+		GFF3442	0.17	-0.4
3,481,213	+		GFF3442	0.17	-0.6
3,481,213	+		GFF3442	0.17	+0.7
3,481,213	+		GFF3442	0.17	-1.4
3,481,213	+		GFF3442	0.17	+0.4
3,481,213	+		GFF3442	0.17	-0.9
3,481,213	+		GFF3442	0.17	-0.6
3,481,213	+		GFF3442	0.17	+0.6
3,481,213	+		GFF3442	0.17	-0.4
3,481,218	+		GFF3442	0.17	-1.1
3,481,221	-		GFF3442	0.17	-0.4
3,481,221	-		GFF3442	0.17	-2.2
3,481,221	-		GFF3442	0.17	+0.0
3,481,221	-		GFF3442	0.17	+0.1
3,481,221	-		GFF3442	0.17	-0.7
3,481,221	-		GFF3442	0.17	-2.0
3,481,221	-		GFF3442	0.17	-1.4
3,481,221	-		GFF3442	0.17	-0.4
3,481,221	-		GFF3442	0.17	-1.2
3,481,221	-		GFF3442	0.17	-0.2
3,481,221	-		GFF3442	0.17	-1.1
3,481,227	+		GFF3442	0.17	-0.6
3,481,227	+		GFF3442	0.17	+0.3
3,481,227	+		GFF3442	0.17	-0.3
3,481,233	-		GFF3442	0.18	+0.3
3,481,235	-		GFF3442	0.18	+0.2
3,481,235	-		GFF3442	0.18	+0.2
3,481,235	-		GFF3442	0.18	-0.8
3,481,238	+		GFF3442	0.18	+0.1
3,481,261	+		GFF3442	0.19	-1.2
3,481,262	+		GFF3442	0.19	-0.3
3,481,269	-		GFF3442	0.19	+0.4
3,481,270	+		GFF3442	0.19	-1.3
3,481,271	+		GFF3442	0.20	+1.0
3,481,275	+		GFF3442	0.20	-1.6
3,481,275	+		GFF3442	0.20	-0.4
3,481,275	+		GFF3442	0.20	-0.5
3,481,275	+		GFF3442	0.20	+0.8
3,481,275	+		GFF3442	0.20	-1.1
3,481,278	-		GFF3442	0.20	-0.6
3,481,280	+		GFF3442	0.20	+1.0
3,481,283	-		GFF3442	0.20	-2.8
3,481,283	-		GFF3442	0.20	+0.7
3,481,283	-		GFF3442	0.20	+0.6
3,481,283	-		GFF3442	0.20	-0.3
3,481,283	-		GFF3442	0.20	-0.5
3,481,283	-		GFF3442	0.20	-1.9
3,481,283	-		GFF3442	0.20	+0.1
3,481,283	-		GFF3442	0.20	-2.2
3,481,283	-		GFF3442	0.20	+0.2
3,481,283	-		GFF3442	0.20	+0.3
3,481,283	-		GFF3442	0.20	-0.6
3,481,298	-		GFF3442	0.21	+0.0
3,481,316	-		GFF3442	0.22	-0.3
3,481,344	+		GFF3442	0.23	-0.4
3,481,347	-		GFF3442	0.23	-2.0
3,481,371	+		GFF3442	0.24	-1.8
3,481,383	-		GFF3442	0.25	-0.5
3,481,400	-		GFF3442	0.26	-0.6
3,481,408	-		GFF3442	0.26	-1.4
3,481,413	-		GFF3442	0.26	+1.6
3,481,439	-		GFF3442	0.27	-0.6
3,481,462	-		GFF3442	0.28	-0.3
3,481,489	+		GFF3442	0.30	+0.0
3,481,491	+		GFF3442	0.30	+1.4
3,481,491	+		GFF3442	0.30	-1.9
3,481,491	+		GFF3442	0.30	-2.2
3,481,491	+		GFF3442	0.30	+0.8
3,481,491	+		GFF3442	0.30	-3.0
3,481,491	+		GFF3442	0.30	-0.5
3,481,496	+		GFF3442	0.30	+0.2
3,481,497	-		GFF3442	0.30	+1.2
3,481,499	-		GFF3442	0.30	+0.4
3,481,499	-		GFF3442	0.30	-0.4
3,481,499	-		GFF3442	0.30	+0.5
3,481,499	-		GFF3442	0.30	+1.3
3,481,501	+		GFF3442	0.30	-2.4
3,481,501	+		GFF3442	0.30	-0.8
3,481,501	+		GFF3442	0.30	+1.7
3,481,501	+		GFF3442	0.30	-0.2
3,481,501	+		GFF3442	0.30	-2.1
3,481,509	-		GFF3442	0.31	-1.3
3,481,509	-		GFF3442	0.31	+0.8
3,481,509	-		GFF3442	0.31	+1.0
3,481,509	-		GFF3442	0.31	+0.2
3,481,560	+		GFF3442	0.33	-1.2
3,481,606	+		GFF3442	0.35	-1.4
3,481,606	+		GFF3442	0.35	+0.1
3,481,606	+		GFF3442	0.35	+0.6
3,481,614	-		GFF3442	0.36	-0.4
3,481,614	-		GFF3442	0.36	+0.5
3,481,614	-		GFF3442	0.36	-0.0
3,481,614	-		GFF3442	0.36	-0.7
3,481,614	-		GFF3442	0.36	+0.3
3,481,614	-		GFF3442	0.36	-1.5
3,481,614	-		GFF3442	0.36	-0.4
3,481,647	-		GFF3442	0.37	-0.2
3,481,667	-		GFF3442	0.38	-0.9
3,481,745	-		GFF3442	0.42	+1.4
3,481,749	+		GFF3442	0.42	-0.2
3,481,757	-		GFF3442	0.42	-0.6
3,481,760	+		GFF3442	0.42	+1.6
3,481,767	+		GFF3442	0.43	+0.2
3,481,768	-		GFF3442	0.43	+0.1
3,481,768	-		GFF3442	0.43	-0.1
3,481,768	-		GFF3442	0.43	-1.3
3,481,775	-		GFF3442	0.43	+0.5
3,481,775	-		GFF3442	0.43	-0.3
3,481,775	-		GFF3442	0.43	+0.2
3,481,775	-		GFF3442	0.43	-1.5
3,481,786	+		GFF3442	0.44	+0.5
3,481,789	+		GFF3442	0.44	+0.5
3,481,789	-		GFF3442	0.44	-3.0
3,481,793	-		GFF3442	0.44	-0.5
3,481,802	-		GFF3442	0.44	+0.0
3,481,802	-		GFF3442	0.44	+0.0
3,481,802	-		GFF3442	0.44	+0.7
3,481,813	+		GFF3442	0.45	-0.3
3,481,821	-		GFF3442	0.45	-0.1
3,481,821	-		GFF3442	0.45	+0.8
3,481,823	+		GFF3442	0.45	+0.0
3,481,823	+		GFF3442	0.45	+0.3
3,481,823	+		GFF3442	0.45	-2.0
3,481,828	+		GFF3442	0.46	-0.6
3,481,838	-		GFF3442	0.46	+0.8