Strain Fitness in Sphingobium sp. HT1-2 around GFF3392

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,429,402	-		GFF3389	0.65	+0.1
3,429,408	-		GFF3389	0.66	+0.4
3,429,422	+		GFF3389	0.70	+0.4
3,429,429	+		GFF3389	0.71	+0.3
3,429,445	-		GFF3389	0.75	+0.6
3,429,466	-		GFF3389	0.80	+1.2
3,429,468	+		GFF3389	0.81	-0.8
3,429,476	-		GFF3389	0.83	+0.8
3,429,516	+				+1.0
3,429,530	+				+0.6
3,429,538	-				+1.0
3,429,567	-				+0.9
3,429,590	-				+1.6
3,429,625	-				-0.3
3,429,636	-				+1.4
3,429,636	-				-1.8
3,429,636	-				+0.8
3,429,636	-				-0.3
3,429,644	-				+0.3
3,429,650	+				+1.7
3,429,651	+				-1.6
3,429,651	+				+1.2
3,429,651	+				-0.2
3,429,652	+				+0.3
3,429,670	+		GFF3390	0.11	-0.2
3,429,683	-		GFF3390	0.14	+1.5
3,429,693	+		GFF3390	0.17	+0.1
3,429,715	-		GFF3390	0.22	-0.5
3,429,720	-		GFF3390	0.24	+1.0
3,429,722	+		GFF3390	0.24	+0.8
3,429,727	+		GFF3390	0.26	-0.5
3,429,735	-		GFF3390	0.28	+0.7
3,429,749	+		GFF3390	0.31	-1.4
3,429,754	+		GFF3390	0.32	+1.9
3,429,754	+		GFF3390	0.32	-0.5
3,429,839	+		GFF3390	0.54	+0.5
3,429,848	-		GFF3390	0.56	+0.1
3,429,875	-		GFF3390	0.63	+0.9
3,429,876	+		GFF3390	0.63	-0.1
3,429,913	-		GFF3390	0.72	-0.6
3,429,918	+		GFF3390	0.74	-0.7
3,429,931	+		GFF3390	0.77	+1.4
3,429,939	+		GFF3390	0.79	-0.2
3,429,940	+		GFF3390	0.79	-1.3
3,429,940	-		GFF3390	0.79	+0.8
3,429,945	+		GFF3390	0.81	+0.8
3,429,960	-		GFF3390	0.84	+0.1
3,429,965	-		GFF3390	0.86	-0.2
3,429,998	-				+0.1
3,429,999	+				+0.5
3,430,007	-				-1.7
3,430,062	-				-0.3
3,430,064	+				-1.6
3,430,069	+		GFF3391	0.11	+0.1
3,430,069	+		GFF3391	0.11	+0.3
3,430,069	+		GFF3391	0.11	+0.2
3,430,069	+		GFF3391	0.11	-0.0
3,430,077	-		GFF3391	0.13	+0.0
3,430,077	-		GFF3391	0.13	-0.1
3,430,090	+		GFF3391	0.17	+0.7
3,430,092	+		GFF3391	0.18	-1.7
3,430,092	+		GFF3391	0.18	+0.3
3,430,092	+		GFF3391	0.18	+1.4
3,430,099	+		GFF3391	0.20	+0.4
3,430,100	-		GFF3391	0.20	-0.5
3,430,100	-		GFF3391	0.20	+0.2
3,430,110	-		GFF3391	0.23	-0.1
3,430,112	+		GFF3391	0.24	-0.6
3,430,112	+		GFF3391	0.24	+0.9
3,430,112	+		GFF3391	0.24	-2.1
3,430,112	+		GFF3391	0.24	+0.5
3,430,112	+		GFF3391	0.24	+0.4
3,430,112	+		GFF3391	0.24	+0.7
3,430,120	-		GFF3391	0.26	+0.9
3,430,120	-		GFF3391	0.26	+0.9
3,430,120	-		GFF3391	0.26	-1.4
3,430,120	-		GFF3391	0.26	-1.7
3,430,155	-		GFF3391	0.37	+0.1
3,430,163	+		GFF3391	0.39	+0.5
3,430,169	-		GFF3391	0.41	-0.3
3,430,171	+		GFF3391	0.42	+1.2
3,430,190	+		GFF3391	0.47	+0.3
3,430,198	-		GFF3391	0.50	+0.9
3,430,230	+		GFF3391	0.59	+0.3
3,430,238	-		GFF3391	0.62	+0.2
3,430,277	+		GFF3391	0.74	+0.6
3,430,277	+		GFF3391	0.74	+1.3
3,430,278	+		GFF3391	0.74	+1.6
3,430,278	+		GFF3391	0.74	-1.9
3,430,285	-		GFF3391	0.76	-0.2
3,430,286	-		GFF3391	0.76	+1.0
3,430,294	+		GFF3391	0.79	+1.1
3,430,302	-		GFF3391	0.81	+1.1
3,430,319	+		GFF3391	0.86	+0.4
3,430,341	-				+0.1
3,430,341	-				+0.0
3,430,352	+				+0.1
3,430,352	+				-0.5
3,430,352	+				-0.1
3,430,352	+				+1.2
3,430,352	+				+0.9
3,430,360	-				+0.8
3,430,360	-				+0.8
3,430,360	-				+0.3
3,430,360	-				+0.8
3,430,398	+				+0.0
3,430,398	+				+1.4
3,430,414	-				-0.1
3,430,435	+				+1.9
3,430,435	+				-0.4
3,430,435	+				+0.5
3,430,435	+				+1.2
3,430,442	-				-1.3
3,430,442	-				+0.8
3,430,475	-				-0.3
3,430,475	-				+2.3
3,430,494	+				-0.6
3,430,500	-				+1.3
3,430,557	-		GFF3392	0.11	-0.5
3,430,586	-		GFF3392	0.13	+2.3
3,430,591	+		GFF3392	0.13	+1.7
3,430,602	+		GFF3392	0.14	+0.5
3,430,607	-		GFF3392	0.15	-1.6
3,430,645	-		GFF3392	0.17	+0.8
3,430,650	+		GFF3392	0.18	+0.1
3,430,650	+		GFF3392	0.18	+0.4
3,430,650	+		GFF3392	0.18	-1.7
3,430,650	+		GFF3392	0.18	+1.3
3,430,650	+		GFF3392	0.18	+0.9
3,430,650	+		GFF3392	0.18	+0.4
3,430,650	+		GFF3392	0.18	-0.2
3,430,650	+		GFF3392	0.18	+0.5
3,430,658	-		GFF3392	0.18	-0.9
3,430,658	-		GFF3392	0.18	-0.8
3,430,658	-		GFF3392	0.18	+1.3
3,430,658	-		GFF3392	0.18	-1.4
3,430,658	-		GFF3392	0.18	-0.3
3,430,667	-		GFF3392	0.19	+1.4
3,430,671	+		GFF3392	0.19	+0.7
3,430,682	+		GFF3392	0.20	+0.1
3,430,696	-		GFF3392	0.21	+0.5
3,430,697	+		GFF3392	0.21	+1.4
3,430,740	+		GFF3392	0.24	+0.1
3,430,748	-		GFF3392	0.24	+0.1
3,430,754	+		GFF3392	0.25	-1.3
3,430,754	+		GFF3392	0.25	-1.5
3,430,756	+		GFF3392	0.25	-2.5
3,430,757	-		GFF3392	0.25	-1.7
3,430,814	+		GFF3392	0.29	+1.1
3,430,822	-		GFF3392	0.30	+0.4
3,430,822	-		GFF3392	0.30	+0.5
3,430,829	+		GFF3392	0.30	+0.0
3,430,837	-		GFF3392	0.31	+1.1
3,430,837	-		GFF3392	0.31	+1.1
3,430,837	-		GFF3392	0.31	+0.8
3,430,875	+		GFF3392	0.33	+0.5
3,430,875	+		GFF3392	0.33	-0.2
3,430,883	-		GFF3392	0.34	-0.3
3,430,884	+		GFF3392	0.34	+1.1
3,430,894	+		GFF3392	0.35	-0.6
3,430,896	-		GFF3392	0.35	+0.1
3,430,901	-		GFF3392	0.35	+0.5
3,430,901	-		GFF3392	0.35	-1.2
3,430,906	-		GFF3392	0.36	-1.0
3,430,906	-		GFF3392	0.36	-1.2
3,430,939	-		GFF3392	0.38	+1.2
3,430,969	+		GFF3392	0.40	-0.5
3,430,969	+		GFF3392	0.40	+0.7
3,430,969	+		GFF3392	0.40	+0.5
3,430,969	+		GFF3392	0.40	+0.2
3,430,969	+		GFF3392	0.40	+0.6
3,430,969	+		GFF3392	0.40	+1.8
3,430,969	+		GFF3392	0.40	-0.2
3,430,969	+		GFF3392	0.40	-0.2
3,430,969	+		GFF3392	0.40	+1.0
3,430,969	+		GFF3392	0.40	+0.3
3,430,969	+		GFF3392	0.40	+1.0
3,430,969	+		GFF3392	0.40	+1.6
3,430,969	+		GFF3392	0.40	-1.2
3,430,969	+		GFF3392	0.40	+0.5
3,430,969	+		GFF3392	0.40	+0.9
3,430,969	+		GFF3392	0.40	+1.4
3,430,969	+		GFF3392	0.40	-1.9
3,430,972	-		GFF3392	0.40	+0.8
3,430,977	-		GFF3392	0.41	+1.0
3,430,977	-		GFF3392	0.41	-1.5
3,430,977	-		GFF3392	0.41	-0.4
3,430,977	-		GFF3392	0.41	+0.9
3,430,977	-		GFF3392	0.41	-0.3
3,430,977	-		GFF3392	0.41	+0.1
3,430,977	-		GFF3392	0.41	+0.8
3,430,977	-		GFF3392	0.41	+0.4
3,430,980	+		GFF3392	0.41	+1.1
3,430,983	-		GFF3392	0.41	-0.5
3,430,988	-		GFF3392	0.41	+0.4
3,431,003	-		GFF3392	0.42	+0.6
3,431,010	-		GFF3392	0.43	-1.2
3,431,055	+		GFF3392	0.46	+0.6
3,431,056	-		GFF3392	0.46	-0.2
3,431,058	-		GFF3392	0.46	+1.8
3,431,062	+		GFF3392	0.47	+0.9
3,431,065	-		GFF3392	0.47	-0.1
3,431,110	-		GFF3392	0.50	-1.0
3,431,110	-		GFF3392	0.50	+0.9
3,431,112	+		GFF3392	0.50	-0.4
3,431,112	+		GFF3392	0.50	+0.9
3,431,112	+		GFF3392	0.50	+0.3
3,431,112	+		GFF3392	0.50	-0.2
3,431,112	+		GFF3392	0.50	+0.4
3,431,120	-		GFF3392	0.51	+0.8
3,431,120	-		GFF3392	0.51	-0.4
3,431,120	-		GFF3392	0.51	-0.2
3,431,120	-		GFF3392	0.51	+0.3
3,431,134	+		GFF3392	0.52	+0.5
3,431,134	+		GFF3392	0.52	-0.6
3,431,142	-		GFF3392	0.52	-0.1
3,431,144	+		GFF3392	0.52	-1.1
3,431,154	+		GFF3392	0.53	-1.2
3,431,154	+		GFF3392	0.53	-0.5
3,431,154	+		GFF3392	0.53	+0.0
3,431,162	-		GFF3392	0.54	-1.5
3,431,162	-		GFF3392	0.54	-0.5
3,431,162	-		GFF3392	0.54	-0.8
3,431,162	-		GFF3392	0.54	+0.5
3,431,164	+		GFF3392	0.54	+0.2
3,431,174	+		GFF3392	0.54	+0.8
3,431,182	-		GFF3392	0.55	+0.5
3,431,182	-		GFF3392	0.55	+0.5
3,431,188	+		GFF3392	0.55	-0.1
3,431,236	+		GFF3392	0.59	+1.5
3,431,236	+		GFF3392	0.59	+1.7
3,431,242	+		GFF3392	0.59	-0.4
3,431,242	+		GFF3392	0.59	+1.6
3,431,242	+		GFF3392	0.59	+1.0
3,431,242	+		GFF3392	0.59	+1.2
3,431,242	+		GFF3392	0.59	+0.4
3,431,242	+		GFF3392	0.59	+0.7
3,431,242	+		GFF3392	0.59	-0.4
3,431,242	+		GFF3392	0.59	+0.2
3,431,242	+		GFF3392	0.59	+0.1
3,431,242	+		GFF3392	0.59	-0.2
3,431,242	+		GFF3392	0.59	+0.4
3,431,242	+		GFF3392	0.59	+0.4
3,431,244	-		GFF3392	0.59	-0.7
3,431,250	-		GFF3392	0.60	-0.5
3,431,250	-		GFF3392	0.60	+0.3
3,431,250	-		GFF3392	0.60	-1.2
3,431,250	-		GFF3392	0.60	+0.9
3,431,250	-		GFF3392	0.60	+0.8
3,431,250	-		GFF3392	0.60	-0.1
3,431,250	-		GFF3392	0.60	-1.4
3,431,250	-		GFF3392	0.60	-1.2
3,431,250	-		GFF3392	0.60	+0.2
3,431,257	+		GFF3392	0.60	-0.1
3,431,257	+		GFF3392	0.60	+1.2
3,431,257	+		GFF3392	0.60	+0.6
3,431,257	+		GFF3392	0.60	+0.1
3,431,257	+		GFF3392	0.60	+0.9
3,431,260	-		GFF3392	0.61	+0.9
3,431,265	-		GFF3392	0.61	+0.4
3,431,265	-		GFF3392	0.61	+1.3
3,431,265	-		GFF3392	0.61	-0.2
3,431,300	+		GFF3392	0.63	-0.5
3,431,346	+		GFF3392	0.67	-1.3
3,431,346	-		GFF3392	0.67	-0.2
3,431,380	+		GFF3392	0.69	-0.1
3,431,388	-		GFF3392	0.70	+1.0
3,431,409	-		GFF3392	0.71	-1.7
3,431,445	-		GFF3392	0.74	+0.7
3,431,487	-		GFF3392	0.77	+0.0
3,431,487	-		GFF3392	0.77	+0.5
3,431,489	+		GFF3392	0.77	+0.8
3,431,514	+		GFF3392	0.78	+1.9
3,431,522	+		GFF3392	0.79	+0.1
3,431,522	+		GFF3392	0.79	-1.3
3,431,522	-		GFF3392	0.79	+0.4
3,431,522	-		GFF3392	0.79	-0.9
3,431,523	-		GFF3392	0.79	-0.6
3,431,537	+		GFF3392	0.80	+0.8
3,431,545	-		GFF3392	0.81	+0.3
3,431,545	-		GFF3392	0.81	+1.0
3,431,553	+		GFF3392	0.81	+0.0
3,431,553	+		GFF3392	0.81	-1.0
3,431,553	+		GFF3392	0.81	+0.2
3,431,553	+		GFF3392	0.81	+1.4
3,431,558	-		GFF3392	0.82	+1.3
3,431,561	+		GFF3392	0.82	+0.0
3,431,561	-		GFF3392	0.82	-0.3
3,431,561	-		GFF3392	0.82	+0.3
3,431,585	+		GFF3392	0.83	+0.3
3,431,599	-		GFF3392	0.84	-1.3
3,431,621	-		GFF3392	0.86	-1.8
3,431,621	-		GFF3392	0.86	+0.0
3,431,642	-		GFF3392	0.87	+0.8
3,431,674	-		GFF3392	0.90	-0.2
3,431,696	+				+0.5
3,431,696	+				-0.6
3,431,705	-				+0.2
3,431,707	+				+2.1
3,431,707	+				-0.5
3,431,711	+				+0.5
3,431,715	-				+0.3
3,431,746	+				+0.1
3,431,746	+				+0.8
3,431,755	+				+1.2
3,431,763	-				-0.4
3,431,763	-				+0.1
3,431,764	-				+1.9
3,431,764	-				+0.2
3,431,769	+				+0.0
3,431,777	-				+0.9
3,431,801	+				+1.5
3,431,807	-				+1.3
3,431,809	-				+0.0
3,431,822	-				+1.2
3,431,827	+				-1.0
3,431,831	-				+0.4
3,431,849	+				+0.3
3,431,867	-				-0.3
3,431,904	+				+0.3
3,431,939	-				+0.7
3,431,960	+				-1.3
3,431,976	-				-0.6
3,431,993	+				+2.0
3,432,001	-				+1.6
3,432,035	+				+0.1
3,432,041	-				+0.3
3,432,071	-				+1.4
3,432,103	-				+1.1
3,432,103	-				+0.5
3,432,120	-				+1.3
3,432,136	+				-0.8
3,432,144	-				+1.8
3,432,144	-				-1.6
3,432,144	-				-0.4
3,432,144	-				+0.7
3,432,144	-				-0.5
3,432,149	-				-1.1
3,432,149	-				+2.0
3,432,193	-				+0.4
3,432,199	+				+0.7
3,432,199	+				-1.4
3,432,200	+				-0.1
3,432,204	+				-1.4
3,432,204	+				+0.5
3,432,245	+		GFF3393	0.11	+0.2
3,432,247	-		GFF3393	0.11	-0.7
3,432,269	+		GFF3393	0.12	+2.0
3,432,280	+		GFF3393	0.12	-0.5
3,432,283	-		GFF3393	0.13	+0.7
3,432,300	-		GFF3393	0.13	+0.6
3,432,316	+		GFF3393	0.14	+1.3
3,432,318	-		GFF3393	0.14	-0.1
3,432,320	+		GFF3393	0.14	+0.8
3,432,320	+		GFF3393	0.14	-1.6
3,432,323	-		GFF3393	0.14	-1.2
3,432,328	-		GFF3393	0.14	+0.4
3,432,347	+		GFF3393	0.15	+0.7
3,432,347	+		GFF3393	0.15	-0.4
3,432,360	-		GFF3393	0.15	+0.6
3,432,361	+		GFF3393	0.15	+0.6
3,432,377	-		GFF3393	0.16	+0.0
3,432,392	+		GFF3393	0.16	-0.2
3,432,400	-		GFF3393	0.16	+1.4
3,432,436	-		GFF3393	0.18	+1.3
3,432,460	+		GFF3393	0.18	+0.5
3,432,460	+		GFF3393	0.18	+0.0
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