Strain Fitness in Sphingobium sp. HT1-2 around GFF3372

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,415,394	+		GFF3369	0.54	-0.3
3,415,395	-		GFF3369	0.54	+0.5
3,415,397	-		GFF3369	0.56	+0.9
3,415,405	-		GFF3369	0.62	+0.1
3,415,427	+		GFF3369	0.78	-0.4
3,415,456	+				-0.4
3,415,464	-				+0.5
3,415,474	-				+1.1
3,415,477	-				-0.7
3,415,516	+				+0.5
3,415,526	+				-1.9
3,415,531	+				-1.8
3,415,532	+				+1.1
3,415,539	-				-0.3
3,415,539	-				+1.1
3,415,539	-				-0.2
3,415,553	+				+0.6
3,415,561	-				+0.7
3,415,561	-				+0.8
3,415,579	+				+0.4
3,415,580	-				+0.0
3,415,668	-				-1.3
3,415,678	+				+1.5
3,415,705	+				+0.4
3,415,705	+				-0.3
3,415,718	-				+1.3
3,415,733	+				+0.8
3,415,749	+		GFF3370	0.11	-1.2
3,415,757	-		GFF3370	0.14	-2.3
3,415,760	+		GFF3370	0.15	+1.0
3,415,769	+		GFF3370	0.18	-0.3
3,415,795	+		GFF3370	0.29	+1.0
3,415,796	-		GFF3370	0.29	+1.2
3,415,796	-		GFF3370	0.29	+1.1
3,415,801	-		GFF3370	0.31	+0.7
3,415,816	-		GFF3370	0.37	+0.4
3,415,845	-		GFF3370	0.48	-0.2
3,415,891	+		GFF3370	0.66	-1.3
3,415,891	+		GFF3370	0.66	-0.6
3,415,899	-		GFF3370	0.69	-0.5
3,415,901	-		GFF3370	0.70	+1.2
3,415,916	+		GFF3370	0.76	+1.1
3,415,918	-		GFF3370	0.77	-0.7
3,415,920	+		GFF3370	0.78	+0.8
3,415,921	+		GFF3370	0.78	-0.5
3,415,945	-		GFF3370	0.87	-0.7
3,415,978	-				+0.4
3,416,004	-				+0.6
3,416,004	-				-0.3
3,416,005	+				+0.4
3,416,011	+				-0.6
3,416,026	-				-0.8
3,416,064	+				+1.9
3,416,064	+				+0.2
3,416,069	+				-2.2
3,416,071	+				-0.1
3,416,071	+				+0.9
3,416,079	-				+0.4
3,416,117	-				+1.1
3,416,119	+				+0.2
3,416,135	-		GFF3371	0.16	-2.1
3,416,146	+		GFF3371	0.23	-0.0
3,416,150	-		GFF3371	0.26	+0.8
3,416,154	-		GFF3371	0.29	-0.1
3,416,154	-		GFF3371	0.29	+0.9
3,416,154	-		GFF3371	0.29	-0.3
3,416,154	-		GFF3371	0.29	+0.4
3,416,166	+		GFF3371	0.37	+1.2
3,416,166	+		GFF3371	0.37	-0.0
3,416,166	+		GFF3371	0.37	-0.6
3,416,166	+		GFF3371	0.37	+0.6
3,416,166	+		GFF3371	0.37	-0.4
3,416,166	+		GFF3371	0.37	+0.2
3,416,167	+		GFF3371	0.37	-0.3
3,416,167	+		GFF3371	0.37	+0.7
3,416,167	-		GFF3371	0.37	+1.3
3,416,174	-		GFF3371	0.42	+0.5
3,416,174	-		GFF3371	0.42	-0.5
3,416,174	-		GFF3371	0.42	-1.1
3,416,174	-		GFF3371	0.42	-1.2
3,416,174	-		GFF3371	0.42	+0.8
3,416,174	-		GFF3371	0.42	+2.0
3,416,174	-		GFF3371	0.42	-0.3
3,416,174	-		GFF3371	0.42	-1.2
3,416,174	-		GFF3371	0.42	+0.1
3,416,232	-		GFF3371	0.82	+1.3
3,416,242	-		GFF3371	0.88	+0.8
3,416,244	+				+0.2
3,416,249	+				-0.1
3,416,249	+				-0.7
3,416,263	+				-0.5
3,416,268	+				-0.3
3,416,271	-				+1.1
3,416,271	-				+0.7
3,416,273	+				+0.0
3,416,276	-				+0.8
3,416,286	-				+0.6
3,416,286	-				+0.8
3,416,286	-				+1.4
3,416,291	-				-0.2
3,416,291	-				+0.3
3,416,296	+				-0.3
3,416,296	+				-0.2
3,416,304	-				-0.1
3,416,304	-				-1.5
3,416,304	-				+0.9
3,416,306	+				+0.1
3,416,319	-				+1.4
3,416,321	+				+1.6
3,416,324	-				+0.2
3,416,324	-				-0.9
3,416,335	+				-0.8
3,416,353	+				+1.1
3,416,353	+				+0.3
3,416,353	+				-0.1
3,416,361	-				+1.3
3,416,361	-				+0.5
3,416,361	-				-0.8
3,416,361	-				+0.8
3,416,361	-				-0.7
3,416,370	-				-0.4
3,416,370	-				+0.9
3,416,408	+		GFF3372	0.12	+0.5
3,416,408	+		GFF3372	0.12	+0.8
3,416,408	+		GFF3372	0.12	+0.5
3,416,416	-		GFF3372	0.15	-0.8
3,416,416	-		GFF3372	0.15	+0.0
3,416,416	-		GFF3372	0.15	-0.2
3,416,416	-		GFF3372	0.15	+0.4
3,416,416	-		GFF3372	0.15	-2.2
3,416,422	+		GFF3372	0.18	+0.8
3,416,461	-		GFF3372	0.33	-0.1
3,416,461	-		GFF3372	0.33	+0.9
3,416,475	-		GFF3372	0.38	-1.2
3,416,476	-		GFF3372	0.38	+0.8
3,416,486	-		GFF3372	0.42	-1.9
3,416,503	+		GFF3372	0.49	+0.8
3,416,510	+		GFF3372	0.51	+0.2
3,416,510	+		GFF3372	0.51	-0.7
3,416,511	-		GFF3372	0.52	-0.1
3,416,543	-		GFF3372	0.64	-0.3
3,416,568	+		GFF3372	0.74	-0.3
3,416,568	+		GFF3372	0.74	+0.4
3,416,576	-		GFF3372	0.77	-0.2
3,416,592	+		GFF3372	0.83	+1.2
3,416,598	+		GFF3372	0.85	-1.9
3,416,600	-		GFF3372	0.86	-1.3
3,416,606	-		GFF3372	0.88	+0.4
3,416,635	-				-0.9
3,416,642	+				+0.8
3,416,642	+				-0.8
3,416,642	+				+0.9
3,416,661	-				-0.9
3,416,696	-				+1.4
3,416,697	+				+0.2
3,416,699	+				+0.1
3,416,700	-				+1.7
3,416,706	-				-1.0
3,416,708	-				+0.2
3,416,722	+				+1.3
3,416,722	+				-0.2
3,416,722	+				-0.0
3,416,722	+				+0.8
3,416,722	+				+0.2
3,416,722	+				+0.8
3,416,722	+				-0.6
3,416,722	+				+0.4
3,416,730	-				-2.7
3,416,730	-				+0.4
3,416,730	-				-1.8
3,416,730	-				-1.3
3,416,730	-				+1.7
3,416,733	+				+0.2
3,416,738	-				-0.2
3,416,739	-				-1.2
3,416,759	+				+0.1
3,416,759	+				-0.2
3,416,760	+				-2.1
3,416,768	-				+0.7
3,416,768	-				+0.8
3,416,786	+		GFF3373	0.10	+0.0
3,416,805	+		GFF3373	0.11	+0.9
3,416,816	+		GFF3373	0.12	+0.9
3,416,829	+		GFF3373	0.13	-0.9
3,416,837	-		GFF3373	0.14	-1.8
3,416,847	+		GFF3373	0.14	+0.4
3,416,849	+		GFF3373	0.14	+0.4
3,416,855	-		GFF3373	0.15	+0.9
3,416,855	-		GFF3373	0.15	-0.2
3,416,855	-		GFF3373	0.15	+0.6
3,416,855	-		GFF3373	0.15	+0.2
3,416,860	+		GFF3373	0.15	+0.3
3,416,879	+		GFF3373	0.17	-2.3
3,416,879	+		GFF3373	0.17	-0.5
3,416,879	+		GFF3373	0.17	+0.5
3,416,879	+		GFF3373	0.17	+0.3
3,416,887	-		GFF3373	0.17	+1.2
3,416,887	-		GFF3373	0.17	-0.3
3,416,887	-		GFF3373	0.17	-0.3
3,416,887	-		GFF3373	0.17	+1.6
3,416,936	+		GFF3373	0.20	-1.5
3,416,936	-		GFF3373	0.20	-0.6
3,416,941	+		GFF3373	0.21	+0.1
3,416,946	+		GFF3373	0.21	+0.4
3,416,949	-		GFF3373	0.21	+0.2
3,416,949	-		GFF3373	0.21	-0.3
3,416,954	-		GFF3373	0.22	-0.8
3,416,954	-		GFF3373	0.22	+1.1
3,416,955	+		GFF3373	0.22	+0.8
3,416,965	+		GFF3373	0.22	-2.2
3,416,978	-		GFF3373	0.23	+0.0
3,416,978	-		GFF3373	0.23	+0.4
3,416,978	-		GFF3373	0.23	+1.6
3,416,978	-		GFF3373	0.23	-0.6
3,416,978	-		GFF3373	0.23	+1.1
3,416,978	-		GFF3373	0.23	-1.6
3,417,005	-		GFF3373	0.25	+0.4
3,417,038	+		GFF3373	0.27	+0.8
3,417,040	+		GFF3373	0.28	-0.2
3,417,040	+		GFF3373	0.28	+2.0
3,417,047	+		GFF3373	0.28	-1.7
3,417,047	+		GFF3373	0.28	+0.1
3,417,053	-		GFF3373	0.29	+1.5
3,417,055	-		GFF3373	0.29	-2.3
3,417,066	+		GFF3373	0.29	+1.5
3,417,076	+		GFF3373	0.30	-1.5
3,417,076	+		GFF3373	0.30	+1.0
3,417,077	+		GFF3373	0.30	+0.5
3,417,096	+		GFF3373	0.31	+0.7
3,417,096	+		GFF3373	0.31	-0.8
3,417,104	-		GFF3373	0.32	+1.6
3,417,104	-		GFF3373	0.32	+0.0
3,417,121	+		GFF3373	0.33	-0.7
3,417,129	-		GFF3373	0.34	+0.8
3,417,187	-		GFF3373	0.38	-1.2
3,417,221	-		GFF3373	0.40	+0.5
3,417,235	+		GFF3373	0.41	+0.5
3,417,235	+		GFF3373	0.41	+0.7
3,417,251	+		GFF3373	0.42	-0.8
3,417,253	+		GFF3373	0.42	+1.4
3,417,310	-		GFF3373	0.46	+0.4
3,417,315	+		GFF3373	0.47	+1.3
3,417,315	+		GFF3373	0.47	-0.6
3,417,315	+		GFF3373	0.47	-0.6
3,417,323	-		GFF3373	0.47	-0.1
3,417,323	-		GFF3373	0.47	-0.1
3,417,415	+		GFF3373	0.53	+0.2
3,417,415	+		GFF3373	0.53	+0.1
3,417,423	-		GFF3373	0.54	+0.4
3,417,423	-		GFF3373	0.54	+0.7
3,417,423	-		GFF3373	0.54	+0.9
3,417,437	+		GFF3373	0.55	+1.1
3,417,443	-		GFF3373	0.55	+0.2
3,417,445	-		GFF3373	0.56	+1.6
3,417,445	-		GFF3373	0.56	+1.2
3,417,445	-		GFF3373	0.56	+0.7
3,417,503	-		GFF3373	0.60	-0.3
3,417,518	-		GFF3373	0.61	+0.1
3,417,518	-		GFF3373	0.61	+0.8
3,417,539	-		GFF3373	0.62	+0.8
3,417,562	+		GFF3373	0.64	+0.2
3,417,562	+		GFF3373	0.64	+0.4
3,417,592	+		GFF3373	0.66	-0.6
3,417,593	-		GFF3373	0.66	-1.4
3,417,600	-		GFF3373	0.66	+0.5
3,417,610	+		GFF3373	0.67	-0.0
3,417,610	+		GFF3373	0.67	-1.0
3,417,610	+		GFF3373	0.67	-1.2
3,417,610	+		GFF3373	0.67	+1.5
3,417,610	+		GFF3373	0.67	-0.9
3,417,610	+		GFF3373	0.67	+0.2
3,417,610	+		GFF3373	0.67	-0.8
3,417,610	+		GFF3373	0.67	+0.2
3,417,610	+		GFF3373	0.67	+1.7
3,417,610	+		GFF3373	0.67	+0.1
3,417,610	+		GFF3373	0.67	-0.8
3,417,610	+		GFF3373	0.67	-0.3
3,417,610	+		GFF3373	0.67	+0.6
3,417,615	+		GFF3373	0.67	-2.2
3,417,615	+		GFF3373	0.67	-0.8
3,417,615	+		GFF3373	0.67	+0.5
3,417,615	+		GFF3373	0.67	+0.1
3,417,615	+		GFF3373	0.67	+1.0
3,417,615	+		GFF3373	0.67	-0.0
3,417,615	+		GFF3373	0.67	-0.3
3,417,615	+		GFF3373	0.67	-0.1
3,417,615	+		GFF3373	0.67	+0.8
3,417,615	+		GFF3373	0.67	+0.1
3,417,615	+		GFF3373	0.67	-0.2
3,417,615	+		GFF3373	0.67	-1.0
3,417,618	-		GFF3373	0.67	-0.0
3,417,618	-		GFF3373	0.67	+0.6
3,417,618	-		GFF3373	0.67	-0.0
3,417,618	-		GFF3373	0.67	-1.3
3,417,618	-		GFF3373	0.67	-0.5
3,417,618	-		GFF3373	0.67	+0.9
3,417,618	-		GFF3373	0.67	+0.9
3,417,618	-		GFF3373	0.67	+0.2
3,417,618	-		GFF3373	0.67	+0.2
3,417,618	-		GFF3373	0.67	+1.0
3,417,620	+		GFF3373	0.68	+0.9
3,417,620	+		GFF3373	0.68	-0.1
3,417,623	-		GFF3373	0.68	-0.5
3,417,623	-		GFF3373	0.68	+0.3
3,417,623	-		GFF3373	0.68	+0.5
3,417,623	-		GFF3373	0.68	+1.8
3,417,623	-		GFF3373	0.68	-1.7
3,417,628	-		GFF3373	0.68	+0.2
3,417,628	-		GFF3373	0.68	+1.2
3,417,630	+		GFF3373	0.68	-1.6
3,417,630	+		GFF3373	0.68	+0.4
3,417,630	+		GFF3373	0.68	-0.7