Strain Fitness in Sphingobium sp. HT1-2 around GFF3249

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,302,482	-				+0.5
3,302,486	+				+0.6
3,302,487	+				+0.1
3,302,489	-				-0.5
3,302,495	-				-2.1
3,302,495	-				+0.7
3,302,496	+				-0.8
3,302,496	+				+0.5
3,302,496	+				-0.0
3,302,496	+				-0.1
3,302,496	+				-0.2
3,302,504	-				-0.9
3,302,504	-				-0.3
3,302,504	-				-2.7
3,302,510	+				+0.2
3,302,512	+				-0.5
3,302,518	-				+0.1
3,302,531	+				-0.4
3,302,536	+				+0.8
3,302,536	+				+0.1
3,302,544	-				-1.1
3,302,544	-				+0.9
3,302,597	+				-0.2
3,302,597	+				-1.8
3,302,602	+				+0.2
3,302,602	+				+0.5
3,302,605	-				+0.5
3,302,607	+				+0.3
3,302,610	-				-0.4
3,302,610	-				-0.2
3,302,641	+				-1.6
3,302,649	+				+0.2
3,302,649	-				-0.3
3,302,649	-				-0.4
3,302,657	-				-1.0
3,302,657	-				+0.1
3,302,666	+				+1.3
3,302,672	+				+0.5
3,302,680	-				-2.0
3,302,724	-		GFF3247	0.26	+0.0
3,302,726	-		GFF3247	0.27	-0.2
3,302,738	+		GFF3247	0.32	-1.4
3,302,766	+		GFF3247	0.43	+0.9
3,302,767	+		GFF3247	0.43	-0.1
3,302,774	+		GFF3247	0.46	-0.3
3,302,775	-		GFF3247	0.46	+1.0
3,302,793	+		GFF3247	0.53	-0.6
3,302,830	+		GFF3247	0.67	+1.1
3,302,838	-		GFF3247	0.71	+0.3
3,302,838	-		GFF3247	0.71	-1.5
3,302,838	-		GFF3247	0.71	-0.5
3,302,885	+		GFF3247	0.89	-1.8
3,302,885	+		GFF3247	0.89	-2.3
3,302,893	-				-1.9
3,302,893	-				+0.4
3,302,893	-				-0.1
3,302,893	-				-0.0
3,302,900	+				+0.3
3,302,903	-				-1.1
3,302,936	-				-1.2
3,302,944	-				-2.2
3,302,953	-				-1.9
3,302,953	-				-2.6
3,302,984	-				-0.2
3,302,985	-				+0.4
3,302,987	-				+0.7
3,302,995	+				-0.6
3,302,995	+				-0.1
3,303,002	+		GFF3248	0.11	+0.1
3,303,027	+		GFF3248	0.21	-0.9
3,303,068	-		GFF3248	0.38	-0.6
3,303,071	+		GFF3248	0.39	-0.3
3,303,071	+		GFF3248	0.39	-0.7
3,303,071	+		GFF3248	0.39	-0.5
3,303,071	+		GFF3248	0.39	+0.9
3,303,071	+		GFF3248	0.39	-2.7
3,303,071	+		GFF3248	0.39	+0.5
3,303,071	+		GFF3248	0.39	-0.7
3,303,072	-		GFF3248	0.39	-1.1
3,303,076	+		GFF3248	0.41	-0.6
3,303,079	-		GFF3248	0.42	-2.3
3,303,079	-		GFF3248	0.42	-0.7
3,303,079	-		GFF3248	0.42	+0.5
3,303,079	-		GFF3248	0.42	+0.2
3,303,089	-		GFF3248	0.46	-1.9
3,303,097	+		GFF3248	0.49	-0.4
3,303,104	+		GFF3248	0.52	-0.0
3,303,104	+		GFF3248	0.52	-1.4
3,303,104	+		GFF3248	0.52	+0.6
3,303,104	+		GFF3248	0.52	-0.2
3,303,111	-		GFF3248	0.55	+0.2
3,303,134	+		GFF3248	0.64	-2.0
3,303,141	+		GFF3248	0.67	-0.6
3,303,166	-		GFF3248	0.77	-0.7
3,303,182	+		GFF3248	0.84	-0.9
3,303,195	-		GFF3248	0.89	-0.8
3,303,200	-				+0.4
3,303,205	-				+0.3
3,303,216	+				-0.0
3,303,224	-				+0.4
3,303,232	-				-0.4
3,303,241	-				+0.3
3,303,273	+				-0.7
3,303,278	+				-0.3
3,303,286	-				+0.6
3,303,296	-				+0.4
3,303,306	+				+1.0
3,303,314	+				-0.6
3,303,316	-				-0.7
3,303,322	-				-0.1
3,303,328	+				-0.3
3,303,333	+				-0.8
3,303,341	-				-0.1
3,303,341	-				-0.3
3,303,341	-				+0.6
3,303,382	-				-0.4
3,303,451	-				+0.3
3,303,451	-				-0.6
3,303,451	-				-0.8
3,303,479	+				-0.5
3,303,479	+				+1.1
3,303,494	+				+0.1
3,303,512	-				-0.7
3,303,571	+				-0.2
3,303,571	+				+0.1
3,303,600	-		GFF3249	0.12	-0.8
3,303,600	-		GFF3249	0.12	+0.1
3,303,600	-		GFF3249	0.12	+0.1
3,303,600	-		GFF3249	0.12	-0.5
3,303,600	-		GFF3249	0.12	-1.1
3,303,615	-		GFF3249	0.14	-2.7
3,303,615	-		GFF3249	0.14	-0.5
3,303,617	+		GFF3249	0.14	-1.3
3,303,617	+		GFF3249	0.14	-0.2
3,303,625	-		GFF3249	0.14	+0.1
3,303,625	-		GFF3249	0.14	+0.5
3,303,653	+		GFF3249	0.17	-0.5
3,303,653	+		GFF3249	0.17	-1.4
3,303,660	+		GFF3249	0.17	-0.4
3,303,661	-		GFF3249	0.18	+0.1
3,303,668	-		GFF3249	0.18	-0.7
3,303,668	-		GFF3249	0.18	-2.5
3,303,668	-		GFF3249	0.18	-0.9
3,303,694	-		GFF3249	0.20	-1.9
3,303,696	+		GFF3249	0.21	-0.1
3,303,699	+		GFF3249	0.21	-1.7
3,303,716	+		GFF3249	0.22	-1.0
3,303,717	+		GFF3249	0.22	-0.8
3,303,724	-		GFF3249	0.23	-0.6
3,303,790	+		GFF3249	0.29	+0.3
3,303,790	+		GFF3249	0.29	-0.1
3,303,795	+		GFF3249	0.29	-0.7
3,303,800	+		GFF3249	0.29	-1.4
3,303,808	-		GFF3249	0.30	-0.4
3,303,808	-		GFF3249	0.30	-1.1
3,303,809	-		GFF3249	0.30	-0.2
3,303,816	+		GFF3249	0.31	+0.6
3,303,819	-		GFF3249	0.31	-0.6
3,303,825	+		GFF3249	0.32	+1.3
3,303,833	-		GFF3249	0.32	-0.3
3,303,838	-		GFF3249	0.33	+1.5
3,303,838	-		GFF3249	0.33	+0.5
3,303,844	+		GFF3249	0.33	+0.3
3,303,844	+		GFF3249	0.33	-0.1
3,303,844	+		GFF3249	0.33	-0.7
3,303,852	-		GFF3249	0.34	-0.6
3,303,852	-		GFF3249	0.34	+0.1
3,303,852	-		GFF3249	0.34	+1.4
3,303,865	+		GFF3249	0.35	+0.5
3,303,872	-		GFF3249	0.36	-0.6
3,303,872	-		GFF3249	0.36	+0.2
3,303,873	-		GFF3249	0.36	+1.2
3,303,873	-		GFF3249	0.36	-0.1
3,303,893	-		GFF3249	0.37	+0.2
3,303,894	-		GFF3249	0.37	+0.3
3,303,895	+		GFF3249	0.38	+0.1
3,303,905	-		GFF3249	0.38	+0.4
3,303,909	-		GFF3249	0.39	+0.0
3,303,909	-		GFF3249	0.39	-0.6
3,303,915	-		GFF3249	0.39	-0.5
3,303,918	+		GFF3249	0.39	-0.3
3,303,926	-		GFF3249	0.40	+0.5
3,303,940	-		GFF3249	0.41	-0.8
3,303,941	-		GFF3249	0.41	+1.3
3,303,943	+		GFF3249	0.42	+0.2
3,303,943	+		GFF3249	0.42	-0.9
3,303,951	-		GFF3249	0.42	+0.3
3,303,957	+		GFF3249	0.43	+0.2
3,303,957	+		GFF3249	0.43	-1.9
3,303,957	+		GFF3249	0.43	-1.1
3,303,962	+		GFF3249	0.43	-2.8
3,303,965	-		GFF3249	0.43	-1.3
3,303,965	-		GFF3249	0.43	-1.2
3,303,978	+		GFF3249	0.45	-0.5
3,303,978	+		GFF3249	0.45	+0.2
3,303,980	-		GFF3249	0.45	-1.9
3,303,986	-		GFF3249	0.45	+0.1
3,304,000	+		GFF3249	0.46	-2.5
3,304,003	-		GFF3249	0.47	-1.1
3,304,008	-		GFF3249	0.47	+1.3
3,304,023	+		GFF3249	0.48	+0.5
3,304,023	+		GFF3249	0.48	+0.8
3,304,036	+		GFF3249	0.50	-0.3
3,304,044	-		GFF3249	0.50	+1.2
3,304,081	+		GFF3249	0.53	+0.9
3,304,081	+		GFF3249	0.53	+0.1
3,304,082	+		GFF3249	0.53	+0.7
3,304,082	+		GFF3249	0.53	-1.3
3,304,082	+		GFF3249	0.53	+0.1
3,304,082	+		GFF3249	0.53	-0.7
3,304,082	+		GFF3249	0.53	-1.4
3,304,082	+		GFF3249	0.53	-0.2
3,304,082	+		GFF3249	0.53	-1.6
3,304,082	+		GFF3249	0.53	+0.1
3,304,082	+		GFF3249	0.53	-0.0
3,304,082	+		GFF3249	0.53	-0.6
3,304,082	+		GFF3249	0.53	-0.5
3,304,082	+		GFF3249	0.53	-1.0
3,304,082	+		GFF3249	0.53	-0.8
3,304,090	-		GFF3249	0.54	-0.7
3,304,090	-		GFF3249	0.54	-2.2
3,304,090	-		GFF3249	0.54	-2.9
3,304,090	-		GFF3249	0.54	-0.9
3,304,090	-		GFF3249	0.54	-0.3
3,304,090	-		GFF3249	0.54	+0.3
3,304,090	-		GFF3249	0.54	+0.5
3,304,090	-		GFF3249	0.54	+0.3
3,304,090	-		GFF3249	0.54	-3.3
3,304,090	-		GFF3249	0.54	-1.0
3,304,090	-		GFF3249	0.54	+0.5
3,304,097	+		GFF3249	0.55	+0.6
3,304,101	+		GFF3249	0.55	-1.6
3,304,101	+		GFF3249	0.55	-0.4
3,304,104	-		GFF3249	0.55	-0.3
3,304,105	-		GFF3249	0.55	-0.3
3,304,105	-		GFF3249	0.55	-0.0
3,304,109	-		GFF3249	0.56	-1.0
3,304,109	-		GFF3249	0.56	-1.6
3,304,109	-		GFF3249	0.56	+0.0
3,304,138	-		GFF3249	0.58	-0.6
3,304,139	-		GFF3249	0.58	-1.3
3,304,141	-		GFF3249	0.58	-0.4
3,304,148	+		GFF3249	0.59	-2.1
3,304,181	-		GFF3249	0.62	-1.6
3,304,181	-		GFF3249	0.62	+0.2
3,304,182	-		GFF3249	0.62	-1.1
3,304,183	+		GFF3249	0.62	-1.3
3,304,191	-		GFF3249	0.63	-0.3
3,304,219	+		GFF3249	0.65	-0.6
3,304,229	-		GFF3249	0.66	-0.1
3,304,234	-		GFF3249	0.66	+0.3
3,304,236	-		GFF3249	0.67	-1.2
3,304,237	+		GFF3249	0.67	-0.2
3,304,242	+		GFF3249	0.67	-0.5
3,304,242	+		GFF3249	0.67	+0.4
3,304,276	+		GFF3249	0.70	-1.8
3,304,284	-		GFF3249	0.71	+0.1
3,304,295	-		GFF3249	0.72	+0.2
3,304,302	+		GFF3249	0.72	-0.0
3,304,335	+		GFF3249	0.75	+0.6
3,304,340	-		GFF3249	0.75	-0.1
3,304,367	-		GFF3249	0.78	-0.0
3,304,367	-		GFF3249	0.78	+0.8
3,304,386	+		GFF3249	0.79	+0.3
3,304,390	+		GFF3249	0.80	-2.3
3,304,394	-		GFF3249	0.80	+0.7
3,304,398	-		GFF3249	0.80	-1.1
3,304,398	-		GFF3249	0.80	+0.0
3,304,398	-		GFF3249	0.80	-0.8
3,304,398	-		GFF3249	0.80	-0.7
3,304,421	+		GFF3249	0.82	+1.3
3,304,421	+		GFF3249	0.82	-1.3
3,304,421	+		GFF3249	0.82	+0.5
3,304,421	+		GFF3249	0.82	+2.2
3,304,421	+		GFF3249	0.82	+0.3
3,304,426	+		GFF3249	0.83	-0.3
3,304,426	-		GFF3249	0.83	-0.7
3,304,429	-		GFF3249	0.83	+0.0
3,304,429	-		GFF3249	0.83	+0.1
3,304,429	-		GFF3249	0.83	-0.6
3,304,429	-		GFF3249	0.83	-1.4
3,304,446	-		GFF3249	0.84	-0.5
3,304,446	-		GFF3249	0.84	+0.5
3,304,446	-		GFF3249	0.84	-1.1
3,304,451	-		GFF3249	0.85	+0.4
3,304,454	+		GFF3249	0.85	-0.8
3,304,468	+		GFF3249	0.86	+0.3
3,304,472	-		GFF3249	0.87	-0.0
3,304,488	+		GFF3249	0.88	+1.1
3,304,488	+		GFF3249	0.88	-0.8
3,304,488	+		GFF3249	0.88	-1.5
3,304,488	+		GFF3249	0.88	-1.3
3,304,488	+		GFF3249	0.88	-0.5
3,304,488	+		GFF3249	0.88	+1.1
3,304,488	+		GFF3249	0.88	+0.4
3,304,488	+		GFF3249	0.88	-1.3
3,304,488	+		GFF3249	0.88	-0.3
3,304,496	-		GFF3249	0.89	-0.5
3,304,496	-		GFF3249	0.89	-0.4
3,304,496	-		GFF3249	0.89	+0.1
3,304,496	-		GFF3249	0.89	-0.5
3,304,499	+		GFF3249	0.89	+1.6
3,304,548	-				-0.4
3,304,548	-				-0.4
3,304,580	-				-1.6
3,304,580	-				+0.5
3,304,590	+				-0.7
3,304,597	+				+0.5
3,304,597	+				-0.2
3,304,604	-				+0.4
3,304,634	+				-1.2
3,304,634	+				+0.7
3,304,635	+				+0.5
3,304,638	-				-2.2
3,304,642	-				+1.3
3,304,642	-				-0.8
3,304,652	-				-2.4
3,304,657	-				+1.1
3,304,703	+				-1.4
3,304,765	-				+0.5
3,304,781	-				-0.7
3,304,786	+				+0.1
3,304,792	+				-1.4
3,304,794	-				-1.9
3,304,795	-				-1.9
3,304,799	-				-0.7
3,304,805	-				+0.7
3,304,812	-				+0.9
3,304,812	-				+0.1
3,304,812	-				+0.4
3,304,855	+				-0.3
3,304,858	-				+0.4
3,304,860	+				-1.3
3,304,865	+				+0.5
3,304,865	+				-0.4
3,304,865	+				-1.8
3,304,865	+				-0.0
3,304,865	+				+0.6
3,304,870	+				-0.3
3,304,873	-				-1.3
3,304,873	-				+0.9
3,304,873	-				+0.4
3,304,873	-				+0.3
3,304,881	+				-1.0
3,304,889	-				+0.0
3,304,889	-				-2.1
3,304,889	-				-0.1
3,304,921	-				-0.6
3,304,921	-				-0.4
3,304,934	-				-0.3
3,304,934	-				-2.0
3,304,954	-				+0.8
3,304,955	+				-0.8
3,304,956	+				+0.2
3,304,957	+				+1.2
3,304,957	+				-0.6
3,304,965	+				+0.9
3,304,965	-				-2.4
3,304,965	-				-1.6
3,304,965	-				-0.5
3,304,965	-				+0.1
3,304,965	-				-1.0
3,304,971	-				-1.8
3,304,982	+				-0.4
3,305,006	-				-0.6
3,305,013	-				-0.3
3,305,013	-				-0.2
3,305,049	-		GFF3250	0.10	+0.9
3,305,109	+		GFF3250	0.12	+0.6
3,305,109	+		GFF3250	0.12	-0.8
3,305,109	+		GFF3250	0.12	+0.7
3,305,109	+		GFF3250	0.12	+0.9
3,305,130	+		GFF3250	0.13	-0.2
3,305,161	+		GFF3250	0.14	+1.2
3,305,168	+		GFF3250	0.14	-0.6
3,305,169	-		GFF3250	0.14	+0.7
3,305,178	+		GFF3250	0.14	-0.6
3,305,186	-		GFF3250	0.15	+0.9
3,305,187	+		GFF3250	0.15	+0.3
3,305,187	+		GFF3250	0.15	+0.6
3,305,187	+		GFF3250	0.15	-0.3
3,305,190	-		GFF3250	0.15	-0.3
3,305,195	-		GFF3250	0.15	-1.4
3,305,195	-		GFF3250	0.15	+0.4
3,305,195	-		GFF3250	0.15	-0.4
3,305,197	+		GFF3250	0.15	-1.4
3,305,199	+		GFF3250	0.15	+0.3
3,305,205	-		GFF3250	0.15	-0.3
3,305,237	+		GFF3250	0.16	-0.2
3,305,289	+		GFF3250	0.18	-0.6
3,305,305	+		GFF3250	0.18	-1.3
3,305,310	+		GFF3250	0.19	+1.1
3,305,310	+		GFF3250	0.19	+0.2
3,305,310	+		GFF3250	0.19	-1.1
3,305,310	+		GFF3250	0.19	+0.3
3,305,310	+		GFF3250	0.19	+1.5
3,305,310	+		GFF3250	0.19	+1.9
3,305,310	+		GFF3250	0.19	+0.5
3,305,310	+		GFF3250	0.19	+0.5
3,305,310	+		GFF3250	0.19	-0.0
3,305,310	+		GFF3250	0.19	+0.2
3,305,310	+		GFF3250	0.19	-0.8
3,305,310	+		GFF3250	0.19	+0.8
3,305,310	+		GFF3250	0.19	-0.5
3,305,312	+		GFF3250	0.19	+0.3
3,305,312	-		GFF3250	0.19	+1.0
3,305,318	-		GFF3250	0.19	-0.0
3,305,318	-		GFF3250	0.19	-1.2
3,305,318	-		GFF3250	0.19	-0.9
3,305,318	-		GFF3250	0.19	+0.5
3,305,318	-		GFF3250	0.19	-0.5
3,305,318	-		GFF3250	0.19	-0.8
3,305,318	-		GFF3250	0.19	-0.2
3,305,318	-		GFF3250	0.19	-2.2
3,305,318	-		GFF3250	0.19	-0.3
3,305,320	-		GFF3250	0.19	-0.1
3,305,320	-		GFF3250	0.19	+1.3
3,305,320	-		GFF3250	0.19	+0.2
3,305,320	-		GFF3250	0.19	-0.5
3,305,325	-		GFF3250	0.19	-1.5
3,305,334	+		GFF3250	0.19	-1.3
3,305,334	+		GFF3250	0.19	-0.9
3,305,334	+		GFF3250	0.19	-1.0
3,305,342	-		GFF3250	0.20	-0.1
3,305,342	-		GFF3250	0.20	-0.4
3,305,342	-		GFF3250	0.20	-0.3
3,305,342	-		GFF3250	0.20	-0.9
3,305,352	-		GFF3250	0.20	+1.3
3,305,355	+		GFF3250	0.20	+0.1
3,305,355	+		GFF3250	0.20	-0.2
3,305,357	-		GFF3250	0.20	-2.5
3,305,396	+		GFF3250	0.21	-0.3
3,305,396	+		GFF3250	0.21	-1.1
3,305,409	+		GFF3250	0.22	+0.3
3,305,414	-		GFF3250	0.22	+0.9
3,305,443	+		GFF3250	0.23	-0.3
3,305,444	+		GFF3250	0.23	-1.1
3,305,445	-		GFF3250	0.23	+0.9
3,305,445	-		GFF3250	0.23	-1.6
3,305,451	-		GFF3250	0.23	-1.2
3,305,491	-		GFF3250	0.24	+0.2
3,305,491	-		GFF3250	0.24	+0.1
3,305,509	-		GFF3250	0.25	+0.2
3,305,522	+		GFF3250	0.25	-2.7
3,305,522	+		GFF3250	0.25	-0.8
3,305,522	+		GFF3250	0.25	-0.0
3,305,522	+		GFF3250	0.25	-1.3
3,305,527	+		GFF3250	0.25	-0.5
3,305,530	+		GFF3250	0.26	-1.1
3,305,530	-		GFF3250	0.26	+0.9
3,305,532	+		GFF3250	0.26	+0.1
3,305,532	+		GFF3250	0.26	-0.0
3,305,532	+		GFF3250	0.26	-1.4
3,305,532	+		GFF3250	0.26	+0.3
3,305,532	+		GFF3250	0.26	-1.1
3,305,537	+		GFF3250	0.26	-0.5
3,305,537	+		GFF3250	0.26	-0.9
3,305,537	+		GFF3250	0.26	-2.1
3,305,537	+		GFF3250	0.26	-0.4
3,305,537	+		GFF3250	0.26	-0.5
3,305,537	+		GFF3250	0.26	-0.4
3,305,537	+		GFF3250	0.26	-2.0
3,305,540	-		GFF3250	0.26	+0.6
3,305,540	-		GFF3250	0.26	-0.5
3,305,540	-		GFF3250	0.26	-0.9
3,305,540	-		GFF3250	0.26	+0.2
3,305,540	-		GFF3250	0.26	+0.6
3,305,540	-		GFF3250	0.26	-0.9
3,305,540	-		GFF3250	0.26	-0.3
3,305,542	+		GFF3250	0.26	-0.3
3,305,545	-		GFF3250	0.26	-0.4
3,305,545	-		GFF3250	0.26	-0.4
3,305,545	-		GFF3250	0.26	-1.2
3,305,545	-		GFF3250	0.26	+0.3
3,305,545	-		GFF3250	0.26	-2.3
3,305,555	+		GFF3250	0.26	+0.4
3,305,555	+		GFF3250	0.26	-1.0
3,305,563	-		GFF3250	0.27	-1.1
3,305,570	+		GFF3250	0.27	-0.2
3,305,570	+		GFF3250	0.27	+0.7
3,305,570	+		GFF3250	0.27	+0.7
3,305,586	+		GFF3250	0.27	-0.7
3,305,586	+		GFF3250	0.27	+0.1
3,305,586	+		GFF3250	0.27	-0.3
3,305,586	+		GFF3250	0.27	-1.0
3,305,594	-		GFF3250	0.28	-0.2
3,305,594	-		GFF3250	0.28	-0.7
3,305,597	+		GFF3250	0.28	-1.2
3,305,611	-		GFF3250	0.28	-0.7
3,305,623	+		GFF3250	0.29	-0.9