Strain Fitness in Sphingobium sp. HT1-2 around GFF3117

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,188,283	-				-1.9
3,188,295	+				-0.2
3,188,309	+				+0.5
3,188,322	+				-1.4
3,188,776	+				-0.8
3,188,802	+				-0.8
3,188,802	+				+0.2
3,188,805	-				-1.0
3,188,807	+				+0.3
3,188,809	+				-1.6
3,188,855	+				-0.2
3,188,869	+				+0.6
3,188,876	+		GFF3117	0.11	-1.7
3,188,920	+		GFF3117	0.18	-1.1
3,188,939	+		GFF3117	0.21	-1.7
3,188,939	+		GFF3117	0.21	+0.5
3,188,939	+		GFF3117	0.21	-1.2
3,188,939	+		GFF3117	0.21	-0.4
3,188,939	+		GFF3117	0.21	+0.4
3,188,947	-		GFF3117	0.23	+0.4
3,188,947	-		GFF3117	0.23	-2.6
3,188,947	-		GFF3117	0.23	+0.8
3,188,947	-		GFF3117	0.23	-0.0
3,188,952	-		GFF3117	0.24	+0.1
3,188,960	+		GFF3117	0.25	-0.8
3,189,019	+		GFF3117	0.35	-0.3
3,189,030	-		GFF3117	0.37	-0.7
3,189,031	+		GFF3117	0.37	-0.4
3,189,031	+		GFF3117	0.37	-0.4
3,189,036	-		GFF3117	0.38	-2.9
3,189,036	-		GFF3117	0.38	-0.4
3,189,064	+		GFF3117	0.42	-0.1
3,189,071	+		GFF3117	0.44	-1.5
3,189,072	-		GFF3117	0.44	-1.6
3,189,078	+		GFF3117	0.45	-0.9
3,189,086	-		GFF3117	0.46	+1.0
3,189,092	-		GFF3117	0.47	-0.2
3,189,132	+		GFF3117	0.54	-0.9
3,189,140	-		GFF3117	0.55	-0.1
3,189,177	+		GFF3117	0.61	-0.4
3,189,177	+		GFF3117	0.61	-1.6
3,189,193	-		GFF3117	0.64	+0.4
3,189,199	+		GFF3117	0.65	-0.4
3,189,207	-		GFF3117	0.66	+0.8
3,189,207	-		GFF3117	0.66	-2.5
3,189,211	+		GFF3117	0.67	-0.5
3,189,232	+		GFF3117	0.71	+0.4
3,189,265	+		GFF3117	0.76	+0.4
3,189,280	+		GFF3117	0.79	-0.1
3,189,288	-		GFF3117	0.80	-0.6
3,189,290	-		GFF3117	0.80	+0.5
3,189,305	+		GFF3117	0.83	+1.2
3,189,332	+		GFF3117	0.88	-0.7
3,189,361	-				+1.5
3,189,394	+				-0.7
3,189,394	+				-0.9
3,189,399	+				+0.6
3,189,399	+				-0.6
3,189,399	+				-1.5
3,189,399	+				-0.4
3,189,399	+				-0.1
3,189,399	+				-0.6
3,189,399	+				+0.2
3,189,399	+				-1.0
3,189,399	+				-0.6
3,189,399	+				-1.8
3,189,399	+				+0.6
3,189,399	+				-0.9
3,189,399	+				+0.2
3,189,399	+				+0.2
3,189,399	+				-0.7
3,189,399	+				-0.5
3,189,399	+				+0.8
3,189,399	+				-0.9
3,189,402	-				+0.2
3,189,407	-				+0.5
3,189,407	-				+1.4
3,189,407	-				-0.5
3,189,407	-				+0.2
3,189,407	-				-0.1
3,189,407	-				-1.4
3,189,407	-				+1.4
3,189,407	-				-0.5
3,189,407	-				-1.8
3,189,407	-				-0.4
3,189,407	-				+0.3
3,189,412	-				-0.1
3,189,428	-				+0.1
3,189,433	+				-1.5
3,189,433	+				+0.5
3,189,433	+				-0.7
3,189,433	+				+1.1
3,189,433	+				-1.9
3,189,433	+				+0.5
3,189,433	+				-0.4
3,189,434	+				-0.7
3,189,441	-				+0.1
3,189,441	-				+0.4
3,189,441	-				-0.9
3,189,442	+				+0.3
3,189,447	+				-1.4
3,189,455	-				-0.5
3,189,464	+				-0.6
3,189,464	+				+0.3
3,189,464	+				+0.2
3,189,464	+				-0.4
3,189,464	+				-0.8
3,189,467	+				-0.2
3,189,472	+				-0.9
3,189,472	-				-1.4
3,189,472	-				+1.3
3,189,477	+				-1.7
3,189,480	-				-0.6
3,189,485	-				-1.6
3,189,490	-				-1.4
3,189,490	-				+1.2
3,189,492	+				+0.6
3,189,492	+				+1.0
3,189,493	+				+0.6
3,189,500	-				+1.2
3,189,500	-				+0.8
3,189,511	+				-0.6
3,189,519	-				+0.5
3,189,561	+				+0.2
3,189,563	+				+0.6
3,189,570	+				-0.1
3,189,609	+				-0.0
3,189,609	+				+1.0
3,189,617	-				-0.4
3,189,617	-				+0.5
3,189,627	+				-0.9
3,189,629	+				-2.5
3,189,635	-				+0.7
3,189,647	+				+0.6
3,189,647	+				+0.9
3,189,652	+				+1.0
3,189,655	-				+0.8
3,189,655	-				+0.3
3,189,655	-				+0.6
3,189,655	-				+1.3
3,189,665	+				+1.0
3,189,665	+				-1.8
3,189,673	+				+0.1
3,189,686	-				-0.4
3,189,694	-				+0.6
3,189,699	-				+0.3
3,189,724	+				-0.5
3,189,761	+		GFF3118	0.11	-2.4
3,189,769	-		GFF3118	0.12	+0.6
3,189,769	-		GFF3118	0.12	-1.5
3,189,769	-		GFF3118	0.12	-0.4
3,189,777	-		GFF3118	0.12	+0.9
3,189,791	+		GFF3118	0.13	+0.4
3,189,791	-		GFF3118	0.13	+0.8
3,189,805	-		GFF3118	0.13	-0.4
3,189,810	-		GFF3118	0.13	+1.0
3,189,847	-		GFF3118	0.15	-0.1
3,189,849	-		GFF3118	0.15	+0.2
3,189,882	+		GFF3118	0.16	+0.9
3,189,887	+		GFF3118	0.17	+0.3
3,189,892	+		GFF3118	0.17	-0.7
3,189,892	+		GFF3118	0.17	-1.3
3,189,895	-		GFF3118	0.17	+0.9
3,189,900	-		GFF3118	0.17	-1.0
3,189,906	+		GFF3118	0.17	-0.4
3,189,910	+		GFF3118	0.18	+0.2
3,189,910	+		GFF3118	0.18	-1.6
3,189,918	-		GFF3118	0.18	-0.3
3,189,918	-		GFF3118	0.18	-1.4
3,189,923	+		GFF3118	0.18	+1.2
3,189,923	-		GFF3118	0.18	-1.1
3,189,923	-		GFF3118	0.18	-0.0
3,189,946	-		GFF3118	0.19	+1.8
3,189,968	+		GFF3118	0.20	+1.0
3,189,968	+		GFF3118	0.20	-0.9
3,189,976	-		GFF3118	0.20	-0.0
3,189,976	-		GFF3118	0.20	+0.2
3,189,984	+		GFF3118	0.21	+0.5
3,189,990	+		GFF3118	0.21	+0.6
3,189,990	+		GFF3118	0.21	+0.9
3,189,998	-		GFF3118	0.21	+0.7
3,190,003	+		GFF3118	0.22	+1.1
3,190,014	+		GFF3118	0.22	-0.7
3,190,014	+		GFF3118	0.22	-2.6
3,190,042	+		GFF3118	0.23	+0.2
3,190,050	-		GFF3118	0.24	-0.8
3,190,052	+		GFF3118	0.24	+1.0
3,190,067	-		GFF3118	0.24	+1.3
3,190,082	-		GFF3118	0.25	-0.4
3,190,092	-		GFF3118	0.25	-0.6
3,190,093	+		GFF3118	0.25	+0.6
3,190,117	+		GFF3118	0.26	-3.3
3,190,125	-		GFF3118	0.27	-0.8
3,190,127	-		GFF3118	0.27	-1.8
3,190,150	-		GFF3118	0.28	-1.0
3,190,157	-		GFF3118	0.28	-0.5
3,190,234	+		GFF3118	0.31	+0.1
3,190,250	+		GFF3118	0.32	-1.4
3,190,257	+		GFF3118	0.32	-1.1
3,190,268	-		GFF3118	0.33	+0.6
3,190,273	+		GFF3118	0.33	+0.6
3,190,273	-		GFF3118	0.33	+0.3
3,190,280	+		GFF3118	0.33	-0.8
3,190,288	-		GFF3118	0.34	+0.6
3,190,288	-		GFF3118	0.34	-0.4
3,190,288	-		GFF3118	0.34	-0.1
3,190,290	+		GFF3118	0.34	+0.3
3,190,312	+		GFF3118	0.35	+0.0
3,190,320	-		GFF3118	0.35	-0.1
3,190,351	-		GFF3118	0.36	-0.4
3,190,360	+		GFF3118	0.37	-1.9
3,190,360	+		GFF3118	0.37	+0.6
3,190,360	+		GFF3118	0.37	+0.4
3,190,360	+		GFF3118	0.37	-1.1
3,190,368	-		GFF3118	0.37	-0.5
3,190,368	-		GFF3118	0.37	+0.0
3,190,368	-		GFF3118	0.37	-0.1
3,190,368	-		GFF3118	0.37	+1.6
3,190,368	-		GFF3118	0.37	-1.3
3,190,368	-		GFF3118	0.37	+0.1
3,190,389	-		GFF3118	0.38	+0.6
3,190,391	-		GFF3118	0.38	-0.5
3,190,395	+		GFF3118	0.38	+0.5