Strain Fitness in Sphingobium sp. HT1-2 around GFF3062

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,134,334	+				-1.2
3,134,345	-				-2.7
3,134,347	-				-1.2
3,134,347	-				-1.2
3,134,360	+				-2.2
3,134,383	-				-0.8
3,134,383	-				-1.3
3,134,397	+				+0.9
3,134,405	-				-2.0
3,134,407	+				+0.6
3,134,407	+				-0.5
3,134,407	+				-1.2
3,134,407	+				+0.4
3,134,415	-				-0.1
3,134,415	-				-0.5
3,134,436	-				-0.5
3,134,436	-				-0.5
3,134,438	+				-0.1
3,134,438	+				+0.8
3,134,486	+				-2.5
3,134,493	+				-2.5
3,134,493	+				-1.7
3,134,510	+				-2.8
3,134,516	+				-1.7
3,134,518	-				-3.0
3,134,520	+				-2.2
3,134,528	-				-3.1
3,134,530	+				-1.8
3,134,530	+				-1.4
3,134,580	+		GFF3061	0.16	-2.7
3,134,583	-		GFF3061	0.16	-2.5
3,134,654	+		GFF3061	0.26	-1.2
3,134,654	+		GFF3061	0.26	-2.4
3,134,654	+		GFF3061	0.26	-1.6
3,134,657	-		GFF3061	0.26	-2.6
3,134,673	-		GFF3061	0.28	-1.2
3,134,677	+		GFF3061	0.29	-1.9
3,134,685	-		GFF3061	0.30	-0.9
3,134,685	-		GFF3061	0.30	-1.4
3,134,704	-		GFF3061	0.33	-2.0
3,134,744	+		GFF3061	0.38	-2.9
3,134,744	+		GFF3061	0.38	-2.1
3,134,744	+		GFF3061	0.38	-2.8
3,134,744	+		GFF3061	0.38	-3.1
3,134,744	+		GFF3061	0.38	-3.8
3,134,744	+		GFF3061	0.38	-2.4
3,134,752	-		GFF3061	0.39	-2.0
3,134,752	-		GFF3061	0.39	-4.1
3,134,752	-		GFF3061	0.39	-1.6
3,134,752	-		GFF3061	0.39	-2.4
3,134,752	-		GFF3061	0.39	-2.2
3,134,752	-		GFF3061	0.39	-2.5
3,134,752	-		GFF3061	0.39	-2.0
3,134,752	-		GFF3061	0.39	-2.5
3,134,770	+		GFF3061	0.41	-2.6
3,134,772	+		GFF3061	0.42	-2.1
3,134,778	-		GFF3061	0.43	-2.2
3,134,805	+		GFF3061	0.46	-4.0
3,134,956	-		GFF3061	0.67	-1.9
3,134,966	-		GFF3061	0.68	-1.8
3,134,986	+		GFF3061	0.71	-3.0
3,134,988	+		GFF3061	0.71	-3.1
3,134,988	+		GFF3061	0.71	-1.8
3,134,988	+		GFF3061	0.71	-2.2
3,134,988	+		GFF3061	0.71	-2.5
3,134,988	+		GFF3061	0.71	-2.6
3,134,988	+		GFF3061	0.71	-2.5
3,134,988	+		GFF3061	0.71	-2.9
3,134,988	+		GFF3061	0.71	-1.2
3,134,988	+		GFF3061	0.71	-1.2
3,134,988	+		GFF3061	0.71	-1.9
3,134,988	+		GFF3061	0.71	-2.1
3,134,988	+		GFF3061	0.71	-1.6
3,134,988	+		GFF3061	0.71	-1.7
3,134,988	+		GFF3061	0.71	-2.5
3,134,988	+		GFF3061	0.71	-2.3
3,134,988	+		GFF3061	0.71	-0.9
3,134,988	+		GFF3061	0.71	-2.4
3,134,988	+		GFF3061	0.71	-1.8
3,134,988	+		GFF3061	0.71	-2.7
3,134,994	-		GFF3061	0.72	-1.4
3,134,995	+		GFF3061	0.72	-0.5
3,134,996	-		GFF3061	0.72	-2.3
3,134,996	-		GFF3061	0.72	-1.5
3,134,996	-		GFF3061	0.72	-3.5
3,134,996	-		GFF3061	0.72	-2.4
3,134,996	-		GFF3061	0.72	-2.2
3,134,996	-		GFF3061	0.72	-2.9
3,134,996	-		GFF3061	0.72	-3.4
3,134,996	-		GFF3061	0.72	-1.9
3,134,996	-		GFF3061	0.72	-1.7
3,134,996	-		GFF3061	0.72	-1.2
3,134,996	-		GFF3061	0.72	-2.9
3,135,022	-		GFF3061	0.76	-2.5
3,135,032	+		GFF3061	0.77	-2.3
3,135,046	-		GFF3061	0.79	-1.7
3,135,091	+		GFF3061	0.85	-1.5
3,135,154	-				-2.5
3,135,162	+				+0.8
3,135,170	-				+1.0
3,135,170	-				+0.4
3,135,195	+				-0.0
3,135,196	+				-0.8
3,135,196	+				-0.4
3,135,202	+				+0.4
3,135,202	+				+1.0
3,135,212	-				-0.9
3,135,228	+				-1.2
3,135,228	+				-2.9
3,135,234	+				-0.3
3,135,234	+				-0.3
3,135,234	+				-1.4
3,135,234	+				-1.7
3,135,234	+				+0.2
3,135,234	+				+0.8
3,135,234	+				-1.7
3,135,234	+				-0.1
3,135,234	+				+0.6
3,135,234	+				+0.5
3,135,234	+				+0.4
3,135,234	+				+0.8
3,135,234	+				-0.4
3,135,234	+				+1.0
3,135,234	+				-0.5
3,135,239	+				-1.7
3,135,239	+				-1.4
3,135,239	+				-1.3
3,135,239	+				+0.0
3,135,242	-				-1.2
3,135,242	-				-1.9
3,135,242	-				+0.0
3,135,242	-				-0.2
3,135,242	-				+0.3
3,135,242	-				-1.1
3,135,242	-				-0.9
3,135,242	-				-0.4
3,135,242	-				-0.9
3,135,242	-				+0.1
3,135,242	-				-0.0
3,135,242	-				-0.2
3,135,242	-				-1.0
3,135,242	-				+0.5
3,135,242	-				+0.0
3,135,242	-				-0.8
3,135,242	-				-1.4
3,135,244	+				+0.4
3,135,247	-				+1.8
3,135,247	-				-0.3
3,135,247	-				-0.4
3,135,247	-				+1.1
3,135,247	-				-2.3
3,135,268	+				+0.8
3,135,268	+				-0.5
3,135,268	+				-0.5
3,135,274	-				-1.1
3,135,276	-				-2.4
3,135,279	+				-1.4
3,135,286	+				-1.5
3,135,287	-				+0.2
3,135,287	-				-1.2
3,135,339	+				-4.1
3,135,350	+				-2.6
3,135,358	-				-4.5
3,135,368	+				-2.4
3,135,375	+				-2.8
3,135,399	+		GFF3062	0.10	-0.8
3,135,407	-		GFF3062	0.11	-2.6
3,135,432	-		GFF3062	0.14	-1.2
3,135,435	+		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-2.2
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-2.0
3,135,437	-		GFF3062	0.15	-1.5
3,135,437	-		GFF3062	0.15	-3.3
3,135,437	-		GFF3062	0.15	-2.0
3,135,437	-		GFF3062	0.15	-2.7
3,135,443	-		GFF3062	0.16	-2.7
3,135,443	-		GFF3062	0.16	-3.2
3,135,446	-		GFF3062	0.16	-1.2
3,135,452	+		GFF3062	0.17	-0.4
3,135,485	+		GFF3062	0.21	-1.2
3,135,488	+		GFF3062	0.22	-1.9
3,135,488	+		GFF3062	0.22	-2.4
3,135,488	+		GFF3062	0.22	-3.8
3,135,488	+		GFF3062	0.22	-1.5
3,135,488	+		GFF3062	0.22	-2.4
3,135,488	+		GFF3062	0.22	-1.7
3,135,488	+		GFF3062	0.22	-2.2
3,135,488	+		GFF3062	0.22	-1.9
3,135,496	-		GFF3062	0.23	-3.9
3,135,496	-		GFF3062	0.23	-2.6
3,135,496	-		GFF3062	0.23	-2.3
3,135,496	-		GFF3062	0.23	-1.6
3,135,508	+		GFF3062	0.24	-2.7
3,135,522	-		GFF3062	0.26	-2.1
3,135,530	+		GFF3062	0.27	-2.5
3,135,532	+		GFF3062	0.27	-2.0
3,135,538	-		GFF3062	0.28	-3.7
3,135,538	-		GFF3062	0.28	-1.5
3,135,540	-		GFF3062	0.28	-1.6
3,135,542	+		GFF3062	0.29	-2.2
3,135,568	+		GFF3062	0.32	-2.6
3,135,578	+		GFF3062	0.33	-3.9
3,135,578	+		GFF3062	0.33	-0.9
3,135,578	+		GFF3062	0.33	-1.7
3,135,578	+		GFF3062	0.33	-0.9
3,135,578	+		GFF3062	0.33	-3.3
3,135,586	-		GFF3062	0.35	-1.9
3,135,586	-		GFF3062	0.35	-1.7
3,135,586	-		GFF3062	0.35	-1.8
3,135,586	-		GFF3062	0.35	-2.3
3,135,608	-		GFF3062	0.37	-1.4
3,135,620	+		GFF3062	0.39	-2.4
3,135,628	-		GFF3062	0.40	-1.5
3,135,633	-		GFF3062	0.41	-1.9
3,135,638	-		GFF3062	0.41	-3.0
3,135,693	+		GFF3062	0.48	-1.4
3,135,693	+		GFF3062	0.48	-2.4
3,135,693	+		GFF3062	0.48	-1.6
3,135,693	+		GFF3062	0.48	-2.2
3,135,693	-		GFF3062	0.48	-3.2
3,135,701	-		GFF3062	0.50	-2.2
3,135,701	-		GFF3062	0.50	-2.0
3,135,701	-		GFF3062	0.50	-4.1
3,135,720	+		GFF3062	0.52	-1.7
3,135,725	-		GFF3062	0.53	-0.5
3,135,732	-		GFF3062	0.54	-2.2
3,135,746	+		GFF3062	0.55	-1.8
3,135,746	+		GFF3062	0.55	-1.5
3,135,771	+		GFF3062	0.59	-3.3
3,135,794	-		GFF3062	0.62	-2.2
3,135,813	+		GFF3062	0.64	-1.9
3,135,831	-		GFF3062	0.67	-3.2
3,135,857	+		GFF3062	0.70	-1.7
3,135,857	+		GFF3062	0.70	-1.5
3,135,865	-		GFF3062	0.71	-1.9
3,135,865	-		GFF3062	0.71	-1.9
3,135,867	+		GFF3062	0.71	-2.4
3,135,868	+		GFF3062	0.71	-1.5
3,135,868	+		GFF3062	0.71	-1.6
3,135,869	+		GFF3062	0.72	-1.4
3,135,869	+		GFF3062	0.72	-2.9
3,135,869	+		GFF3062	0.72	-1.9
3,135,875	+		GFF3062	0.72	-1.5
3,135,875	+		GFF3062	0.72	-1.2
3,135,875	-		GFF3062	0.72	-3.1
3,135,875	-		GFF3062	0.72	-2.2
3,135,876	-		GFF3062	0.72	-1.4
3,135,877	-		GFF3062	0.73	-2.3
3,135,877	-		GFF3062	0.73	-2.0
3,135,877	-		GFF3062	0.73	-2.0
3,135,877	-		GFF3062	0.73	-2.9
3,135,888	-		GFF3062	0.74	-1.9
3,135,888	-		GFF3062	0.74	-3.0
3,135,915	-		GFF3062	0.78	-0.8
3,135,965	-		GFF3062	0.84	-2.1
3,135,970	+		GFF3062	0.85	-0.6
3,135,970	+		GFF3062	0.85	-2.4
3,135,976	+		GFF3062	0.85	-2.8
3,135,977	-		GFF3062	0.86	-2.0
3,135,978	-		GFF3062	0.86	-2.2
3,135,978	-		GFF3062	0.86	-1.6
3,135,978	-		GFF3062	0.86	-4.2
3,135,978	-		GFF3062	0.86	-2.4
3,135,978	-		GFF3062	0.86	-1.6
3,135,984	-		GFF3062	0.87	-1.9
3,135,984	-		GFF3062	0.87	-1.4
3,135,984	-		GFF3062	0.87	-0.9
3,135,984	-		GFF3062	0.87	-1.9
3,135,984	-		GFF3062	0.87	-1.4
3,135,991	+		GFF3062	0.87	-2.4
3,135,991	+		GFF3062	0.87	-1.7
3,135,991	+		GFF3062	0.87	-3.1
3,136,006	+		GFF3062	0.89	-2.3
3,136,018	+				-1.4
3,136,075	-				-1.8
3,136,154	+				-0.2
3,136,171	+				+0.9
3,136,210	-				-1.3
3,136,218	+				+0.3
3,136,253	+				+0.2
3,136,259	+				-0.2
3,136,259	+				-1.8
3,136,259	+				-0.6
3,136,267	-				+0.7
3,136,267	-				-0.8
3,136,267	-				+0.5
3,136,267	-				-0.6
3,136,267	-				+0.1
3,136,294	+		GFF3063	0.12	-0.8
3,136,302	-		GFF3063	0.15	-1.5
3,136,304	+		GFF3063	0.16	-1.2
3,136,312	-		GFF3063	0.19	-1.0
3,136,330	-		GFF3063	0.27	-2.0
3,136,342	+		GFF3063	0.31	+0.2
3,136,342	+		GFF3063	0.31	-0.6
3,136,360	-		GFF3063	0.39	+0.2
3,136,394	-		GFF3063	0.52	-1.2
3,136,408	-		GFF3063	0.58	-1.8
3,136,425	+		GFF3063	0.65	+0.1
3,136,425	+		GFF3063	0.65	+0.1
3,136,425	+		GFF3063	0.65	-0.1
3,136,425	+		GFF3063	0.65	+0.4
3,136,433	-		GFF3063	0.68	-0.3
3,136,438	-		GFF3063	0.70	-0.8
3,136,438	-		GFF3063	0.70	-0.8
3,136,438	-		GFF3063	0.70	-0.5
3,136,444	+		GFF3063	0.72	+0.1
3,136,452	-		GFF3063	0.76	-0.8
3,136,468	+		GFF3063	0.82	-2.1
3,136,468	+		GFF3063	0.82	-1.9
3,136,482	+		GFF3063	0.88	-0.3
3,136,548	-				-2.3
3,136,551	+				-0.7
3,136,551	+				+1.0
3,136,554	-				-1.2
3,136,559	-				+0.0
3,136,574	+				-1.3
3,136,574	+				-0.7
3,136,574	+				-1.6
3,136,574	+				-3.2
3,136,574	+				-2.2
3,136,574	+				-2.2
3,136,574	+				-2.0
3,136,574	+				-0.3
3,136,575	-				-2.2
3,136,575	-				-1.5
3,136,575	-				-2.3
3,136,582	-		GFF3064	0.11	+0.3
3,136,582	-		GFF3064	0.11	-1.3
3,136,582	-		GFF3064	0.11	-0.3
3,136,582	-		GFF3064	0.11	-2.4
3,136,582	-		GFF3064	0.11	-2.0
3,136,582	-		GFF3064	0.11	-1.6
3,136,584	+		GFF3064	0.12	-3.2
3,136,587	-		GFF3064	0.12	-2.2
3,136,592	-		GFF3064	0.14	-1.2
3,136,597	-		GFF3064	0.15	-0.6
3,136,599	+		GFF3064	0.16	-2.1
3,136,607	-		GFF3064	0.18	-2.9
3,136,630	-		GFF3064	0.25	-2.5
3,136,653	+		GFF3064	0.32	-2.7
3,136,653	+		GFF3064	0.32	-3.5
3,136,653	+		GFF3064	0.32	-0.4
3,136,653	+		GFF3064	0.32	-2.2
3,136,661	-		GFF3064	0.35	-1.3
3,136,726	+		GFF3064	0.55	-2.8
3,136,742	+		GFF3064	0.59	-0.7
3,136,754	+		GFF3064	0.63	-2.8
3,136,804	+		GFF3064	0.78	-0.6
3,136,804	+		GFF3064	0.78	-0.2
3,136,812	-		GFF3064	0.81	-1.5
3,136,821	-		GFF3064	0.83	-2.2
3,136,824	+		GFF3064	0.84	-2.3
3,136,831	+		GFF3064	0.86	-3.1
3,136,839	-		GFF3064	0.89	-1.7
3,136,843	-				-0.8
3,136,869	+				-0.3
3,136,869	+				+0.2
3,136,870	+				+0.2
3,136,870	+				-1.2
3,136,877	-				+0.5
3,136,877	-				-0.2
3,136,877	-				-1.6
3,136,877	-				+0.4
3,136,878	-				+0.1
3,136,878	-				-0.2
3,136,878	-				-2.4
3,136,899	-				-0.1
3,136,918	-				-1.4
3,136,946	-				-1.8
3,136,958	+				-1.7
3,136,958	-				+0.0
3,136,970	+				-0.4
3,136,974	-				-0.9
3,136,975	+				-0.1
3,136,978	-				-2.2
3,136,978	-				+0.4
3,136,983	-				+0.5
3,136,983	-				-1.2
3,136,997	-				-1.2
3,137,015	-				-0.2
3,137,025	+		GFF3065	0.11	-0.3
3,137,025	+		GFF3065	0.11	+1.2
3,137,033	-		GFF3065	0.13	+0.1
3,137,038	+		GFF3065	0.13	+0.0
3,137,039	-		GFF3065	0.14	-0.9
3,137,058	+		GFF3065	0.17	-0.5
3,137,066	-		GFF3065	0.18	-0.6