Strain Fitness in Sphingobium sp. HT1-2 around GFF3

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,157	+				+1.7
1,162	+				-0.4
1,165	-				+1.9
1,170	-				-0.2
1,170	-				-0.1
1,192	+				-0.6
1,202	+				-0.2
1,210	-				-1.5
1,249	-				-0.1
1,249	-				+0.4
1,250	-				-1.6
1,258	-		GFF2	0.10	-1.4
1,285	+		GFF2	0.14	+1.6
1,285	+		GFF2	0.14	-0.1
1,285	+		GFF2	0.14	+0.4
1,293	+		GFF2	0.15	-0.2
1,293	-		GFF2	0.15	+0.6
1,293	-		GFF2	0.15	-0.4
1,299	-		GFF2	0.15	+0.6
1,299	-		GFF2	0.15	+0.1
1,341	+		GFF2	0.21	-1.7
1,359	+		GFF2	0.23	+0.5
1,359	+		GFF2	0.23	+1.2
1,359	+		GFF2	0.23	+0.4
1,359	+		GFF2	0.23	-1.8
1,359	+		GFF2	0.23	+0.3
1,359	+		GFF2	0.23	-0.7
1,367	-		GFF2	0.24	+0.6
1,367	-		GFF2	0.24	-0.5
1,367	-		GFF2	0.24	-0.2
1,367	-		GFF2	0.24	-1.3
1,367	-		GFF2	0.24	-1.1
1,367	-		GFF2	0.24	-0.2
1,368	+		GFF2	0.25	+0.7
1,373	+		GFF2	0.25	+0.2
1,396	+		GFF2	0.28	-1.6
1,404	-		GFF2	0.29	-0.6
1,406	+		GFF2	0.30	-0.6
1,406	+		GFF2	0.30	+0.8
1,406	+		GFF2	0.30	-0.3
1,412	-		GFF2	0.30	-0.3
1,414	-		GFF2	0.31	-0.4
1,414	-		GFF2	0.31	-0.4
1,414	-		GFF2	0.31	-0.2
1,414	-		GFF2	0.31	+0.5
1,427	-		GFF2	0.32	-1.3
1,438	-		GFF2	0.34	-2.3
1,440	-		GFF2	0.34	-0.1
1,469	-		GFF2	0.38	-0.5
1,469	-		GFF2	0.38	-0.1
1,469	-		GFF2	0.38	+0.1
1,495	-		GFF2	0.41	-0.1
1,511	+		GFF2	0.43	-0.7
1,577	+		GFF2	0.52	-1.7
1,598	+		GFF2	0.55	+0.4
1,611	-		GFF2	0.57	+0.6
1,628	-		GFF2	0.59	-0.0
1,637	-		GFF2	0.60	-0.1
1,639	-		GFF2	0.60	+0.6
1,656	+		GFF2	0.62	-0.8
1,656	+		GFF2	0.62	+0.7
1,664	-		GFF2	0.64	+0.2
1,743	+		GFF2	0.74	-1.0
1,743	+		GFF2	0.74	-0.4
1,748	+		GFF2	0.75	-0.2
1,749	+		GFF2	0.75	+0.2
1,751	-		GFF2	0.75	+0.5
1,760	+		GFF2	0.76	+0.2
1,766	-		GFF2	0.77	-0.1
1,781	+		GFF2	0.79	+1.9
1,786	+		GFF2	0.80	-0.2
1,796	+		GFF2	0.81	+1.1
1,845	-		GFF2	0.87	+0.9
1,857	+		GFF2	0.89	+1.6
1,896	+				-0.0
2,045	-				+1.5
2,063	-				-1.2
2,071	+				+0.4
2,071	+				-0.0
2,071	+				+0.9
2,071	+				-1.9
2,071	+				+0.2
2,071	+				-0.6
2,071	+				-1.2
2,071	+				+0.2
2,071	+				-0.4
2,071	+				-0.4
2,071	+				-0.8
2,071	+				-0.7
2,071	+				-0.2
2,071	+				-0.1
2,071	+				+0.2
2,071	+				+0.4
2,079	-				-1.4
2,079	-				-0.4
2,079	-				-2.6
2,079	-				-1.7
2,079	-				-0.0
2,079	-				-0.3
2,079	-				+0.4
2,079	-				+0.2
2,079	-				+0.9
2,079	-				+0.6
2,079	-				-0.5
2,079	-				-1.7
2,079	-				-0.9
2,079	-				-0.5
2,079	-				-0.7
2,079	-				+1.0
2,079	-				-0.5
2,079	-				+0.6
2,079	-				+0.1
2,079	-				-1.2
2,079	-				-1.2
2,079	-				-0.8
2,079	-				-0.9
2,079	-				-1.7
2,079	-				-0.7
2,079	-				-1.6
2,079	-				-0.9
2,079	-				+0.5
2,079	-				-0.9
2,079	-				-0.3
2,079	-				-0.9
2,079	-				-0.5
2,079	-				-0.9
2,079	-				+0.9
2,079	-				-2.3
2,079	-				-0.7
2,081	+				-1.0
2,081	-				+0.3
2,088	+				-0.4
2,113	-				+0.7
2,118	-				+0.2
2,174	-				+1.0
2,174	-				+0.8
2,177	+				-0.8
2,226	-				-0.2
2,238	-		GFF3	0.11	-0.1
2,238	-		GFF3	0.11	+1.7
2,270	-		GFF3	0.16	-0.4
2,270	-		GFF3	0.16	-1.1
2,278	+		GFF3	0.17	-1.2
2,293	+		GFF3	0.19	-0.5
2,293	+		GFF3	0.19	-0.1
2,293	+		GFF3	0.19	+0.4
2,296	-		GFF3	0.20	+0.7
2,300	+		GFF3	0.20	-2.0
2,301	+		GFF3	0.20	+0.4
2,301	+		GFF3	0.20	-2.6
2,301	+		GFF3	0.20	-0.3
2,301	-		GFF3	0.20	-1.8
2,301	-		GFF3	0.20	+0.4
2,301	-		GFF3	0.20	+0.4
2,308	-		GFF3	0.21	-0.4
2,309	-		GFF3	0.21	+0.1
2,309	-		GFF3	0.21	+0.1
2,332	+		GFF3	0.25	+0.4
2,332	+		GFF3	0.25	+1.1
2,332	+		GFF3	0.25	-0.1
2,332	+		GFF3	0.25	+0.3
2,332	+		GFF3	0.25	-1.4
2,332	+		GFF3	0.25	+1.3
2,335	-		GFF3	0.25	-0.8
2,340	-		GFF3	0.26	+0.1
2,340	-		GFF3	0.26	-0.2
2,340	-		GFF3	0.26	+1.4
2,340	-		GFF3	0.26	+0.5
2,347	-		GFF3	0.27	+0.9
2,367	+		GFF3	0.30	-1.3
2,367	+		GFF3	0.30	-1.5
2,367	+		GFF3	0.30	-0.5
2,367	+		GFF3	0.30	+0.1
2,367	+		GFF3	0.30	-0.8
2,375	-		GFF3	0.31	+0.3
2,375	-		GFF3	0.31	+0.6
2,375	-		GFF3	0.31	-2.2
2,375	-		GFF3	0.31	-0.5
2,375	-		GFF3	0.31	-0.4
2,375	-		GFF3	0.31	+1.5
2,375	-		GFF3	0.31	-0.4
2,377	+		GFF3	0.31	-0.2
2,385	-		GFF3	0.32	-1.0
2,390	+		GFF3	0.33	+0.2
2,411	-		GFF3	0.36	-0.2
2,487	+		GFF3	0.46	-1.9
2,487	-		GFF3	0.46	+0.4
2,492	+		GFF3	0.47	-0.8
2,494	+		GFF3	0.47	-0.6
2,502	-		GFF3	0.48	+1.1
2,502	-		GFF3	0.48	-0.0
2,502	-		GFF3	0.48	-1.2
2,513	-		GFF3	0.50	+0.4
2,553	+		GFF3	0.56	-1.5
2,561	-		GFF3	0.57	-0.5
2,563	+		GFF3	0.57	+1.5
2,563	+		GFF3	0.57	-0.6
2,563	+		GFF3	0.57	+0.2
2,563	+		GFF3	0.57	-0.4
2,563	+		GFF3	0.57	-2.5
2,563	+		GFF3	0.57	+0.2
2,563	+		GFF3	0.57	-0.4
2,566	-		GFF3	0.57	+0.2
2,566	-		GFF3	0.57	+0.2
2,566	-		GFF3	0.57	-2.1
2,571	-		GFF3	0.58	+0.6
2,571	-		GFF3	0.58	+0.5
2,571	-		GFF3	0.58	+0.6
2,571	-		GFF3	0.58	+0.4
2,590	-		GFF3	0.61	-0.4
2,606	-		GFF3	0.63	-0.0
2,608	+		GFF3	0.63	+0.0
2,618	+		GFF3	0.65	-0.6
2,618	+		GFF3	0.65	-1.6
2,618	+		GFF3	0.65	-0.2
2,618	+		GFF3	0.65	+0.8
2,618	+		GFF3	0.65	-1.2
2,626	+		GFF3	0.66	-2.3
2,626	-		GFF3	0.66	-0.1
2,626	-		GFF3	0.66	-0.2
2,626	-		GFF3	0.66	+0.4
2,626	-		GFF3	0.66	+0.5
2,627	+		GFF3	0.66	+1.2
2,640	+		GFF3	0.68	-0.8
2,648	-		GFF3	0.69	+0.5
2,654	+		GFF3	0.70	+0.2
2,662	+		GFF3	0.71	-0.3
2,662	+		GFF3	0.71	+0.4
2,662	+		GFF3	0.71	-0.4
2,662	-		GFF3	0.71	-1.9
2,670	-		GFF3	0.72	-1.7
2,670	-		GFF3	0.72	+0.8
2,675	-		GFF3	0.73	+0.6
2,680	-		GFF3	0.73	+1.3
2,702	+		GFF3	0.76	-1.1
2,702	+		GFF3	0.76	-1.0
2,702	+		GFF3	0.76	-2.1
2,713	+		GFF3	0.78	-2.6
2,718	+		GFF3	0.79	-0.7
2,723	+		GFF3	0.79	-0.5
2,736	-		GFF3	0.81	+0.2
2,737	+		GFF3	0.81	+0.5
2,744	+		GFF3	0.82	+1.0
2,752	-		GFF3	0.83	+0.8
2,758	+		GFF3	0.84	+0.5
2,758	+		GFF3	0.84	-1.2
2,766	-		GFF3	0.85	-0.4
2,766	-		GFF3	0.85	-0.8
2,766	-		GFF3	0.85	-0.8
2,783	+		GFF3	0.88	-1.7
2,783	+		GFF3	0.88	+0.8
2,783	+		GFF3	0.88	+1.7
2,783	+		GFF3	0.88	+1.2
2,783	+		GFF3	0.88	-1.9
2,783	+		GFF3	0.88	-0.2
2,783	+		GFF3	0.88	-0.1
2,783	+		GFF3	0.88	-0.5
2,783	+		GFF3	0.88	-0.2
2,783	+		GFF3	0.88	+0.1
2,783	+		GFF3	0.88	-1.0
2,783	+		GFF3	0.88	+0.4
2,783	+		GFF3	0.88	-0.3
2,783	+		GFF3	0.88	-0.8
2,791	+		GFF3	0.89	-0.9
2,791	-		GFF3	0.89	+0.5
2,791	-		GFF3	0.89	-1.8
2,791	-		GFF3	0.89	-0.6
2,791	-		GFF3	0.89	-1.3
2,791	-		GFF3	0.89	-0.8
2,791	-		GFF3	0.89	-0.4
2,791	-		GFF3	0.89	-1.1
2,801	+				-0.9
2,810	+				-1.4
2,845	-				-0.4
2,894	+				+0.2
2,895	+				+1.4
2,900	+				-1.5
2,900	-				+0.4
2,902	+				-2.4
2,902	-				+0.6
2,918	+				+0.9
2,931	-				+0.8
2,931	-				-0.0
2,937	+				-1.5
3,007	-				+0.3
3,017	+				-1.7
3,021	+				-2.6
3,038	+				-0.9
3,040	-				-0.8
3,043	+				-3.0
3,043	+				-1.0
3,043	+				-1.3
3,043	+				-0.8
3,043	+				-0.7
3,043	+				+0.6
3,043	+				-0.0
3,043	+				+0.5
3,043	+				-1.5
3,043	+				+0.1
3,046	-				-0.7
3,046	-				+1.3
3,051	-				-0.0
3,051	-				+0.2
3,051	-				+0.6
3,051	-				+1.4
3,077	+		GFF4	0.18	+0.8
3,077	+		GFF4	0.18	-0.5
3,085	-		GFF4	0.20	+0.1
3,090	-		GFF4	0.22	+2.4
3,092	+		GFF4	0.22	+0.8
3,163	-		GFF4	0.44	-1.6
3,164	+		GFF4	0.44	-1.7
3,164	+		GFF4	0.44	-0.3
3,164	+		GFF4	0.44	-2.3
3,165	+		GFF4	0.44	-0.7
3,198	-		GFF4	0.54	-2.0
3,209	-		GFF4	0.58	-0.2
3,218	+		GFF4	0.60	-0.3
3,226	-		GFF4	0.63	-1.2
3,226	-		GFF4	0.63	+0.1
3,264	+		GFF4	0.74	-1.6
3,270	+		GFF4	0.76	-0.0
3,308	-		GFF4	0.88	+1.3
3,308	-		GFF4	0.88	+0.2
3,317	-				-1.9
3,322	-				+1.9
3,435	-		GFF5	0.28	-2.1
3,493	+		GFF5	0.47	-1.4
3,508	+		GFF5	0.52	-0.0
3,508	+		GFF5	0.52	+0.1
3,528	+		GFF5	0.59	-1.4
3,528	+		GFF5	0.59	+0.4
3,540	+		GFF5	0.63	-1.3
3,540	+		GFF5	0.63	-2.5
3,540	+		GFF5	0.63	-1.8
3,651	+				-1.8
3,657	-				-1.8
3,740	-				-0.9
3,745	-				-1.9
3,774	-				-0.7
3,776	+				-1.9
3,776	+				-0.2
3,805	+				+1.6
3,809	+				+1.2
3,811	+				+0.2
3,824	+				-0.9
3,824	+				-1.2
3,824	+				+0.1
3,824	+				-0.4
3,824	+				-0.3
3,825	-				-1.2
3,829	+				-1.5
3,829	+				+0.3
3,832	-				+0.1
3,837	-				+0.7
3,838	-				-1.0
3,838	-				-0.5
3,838	-				+0.3
3,844	+				+0.2
3,844	+				-1.3
3,852	-				+1.5
3,855	-				-1.0