Strain Fitness in Sphingobium sp. HT1-2 around GFF2994

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,051,485	+		GFF2993	0.47	-0.4
3,051,504	+		GFF2993	0.48	-0.4
3,051,505	-		GFF2993	0.48	+0.4
3,051,513	+		GFF2993	0.49	+1.0
3,051,523	+		GFF2993	0.50	-0.4
3,051,547	+		GFF2993	0.51	+0.3
3,051,555	-		GFF2993	0.52	+0.4
3,051,565	-		GFF2993	0.53	-1.5
3,051,567	-		GFF2993	0.53	-0.7
3,051,582	-		GFF2993	0.54	-1.2
3,051,588	+		GFF2993	0.54	-0.5
3,051,593	+		GFF2993	0.55	+1.2
3,051,593	+		GFF2993	0.55	+0.8
3,051,601	+		GFF2993	0.55	+0.8
3,051,604	+		GFF2993	0.55	+0.1
3,051,625	+		GFF2993	0.57	-0.3
3,051,625	+		GFF2993	0.57	-0.4
3,051,633	-		GFF2993	0.57	+0.8
3,051,643	+		GFF2993	0.58	-0.5
3,051,643	+		GFF2993	0.58	+0.8
3,051,643	+		GFF2993	0.58	+1.0
3,051,643	+		GFF2993	0.58	-0.8
3,051,643	+		GFF2993	0.58	-1.4
3,051,643	+		GFF2993	0.58	-0.2
3,051,646	-		GFF2993	0.58	+0.2
3,051,646	-		GFF2993	0.58	-1.6
3,051,648	+		GFF2993	0.59	+0.2
3,051,650	+		GFF2993	0.59	+1.7
3,051,651	-		GFF2993	0.59	-1.5
3,051,651	-		GFF2993	0.59	+0.3
3,051,651	-		GFF2993	0.59	-1.0
3,051,651	-		GFF2993	0.59	-1.8
3,051,651	-		GFF2993	0.59	-0.8
3,051,658	-		GFF2993	0.59	-0.1
3,051,658	-		GFF2993	0.59	-1.1
3,051,663	-		GFF2993	0.60	-0.6
3,051,666	+		GFF2993	0.60	-0.2
3,051,703	+		GFF2993	0.62	-1.4
3,051,704	+		GFF2993	0.63	-1.7
3,051,713	+		GFF2993	0.63	-0.5
3,051,729	+		GFF2993	0.64	-1.4
3,051,737	-		GFF2993	0.65	-2.3
3,051,737	-		GFF2993	0.65	-0.7
3,051,737	-		GFF2993	0.65	+0.4
3,051,739	+		GFF2993	0.65	-0.2
3,051,745	-		GFF2993	0.65	-2.9
3,051,745	-		GFF2993	0.65	+0.4
3,051,755	-		GFF2993	0.66	-0.4
3,051,758	-		GFF2993	0.66	-1.1
3,051,761	+		GFF2993	0.67	+1.3
3,051,761	+		GFF2993	0.67	-0.8
3,051,761	+		GFF2993	0.67	-1.0
3,051,769	-		GFF2993	0.67	-1.1
3,051,773	+		GFF2993	0.67	+0.3
3,051,805	+		GFF2993	0.70	+0.8
3,051,805	+		GFF2993	0.70	-1.4
3,051,839	+		GFF2993	0.72	+0.3
3,051,862	+		GFF2993	0.74	+0.4
3,051,862	+		GFF2993	0.74	+0.5
3,051,862	+		GFF2993	0.74	-1.2
3,051,866	+		GFF2993	0.74	+1.3
3,051,870	-		GFF2993	0.74	-1.4
3,051,881	+		GFF2993	0.75	-0.1
3,051,916	-		GFF2993	0.78	-1.3
3,051,916	-		GFF2993	0.78	+0.2
3,051,952	-		GFF2993	0.80	-0.2
3,052,007	+		GFF2993	0.84	+0.5
3,052,009	+		GFF2993	0.84	-1.3
3,052,011	+		GFF2993	0.84	+0.3
3,052,011	+		GFF2993	0.84	-1.4
3,052,011	+		GFF2993	0.84	-0.1
3,052,011	+		GFF2993	0.84	-0.5
3,052,019	-		GFF2993	0.85	-1.3
3,052,019	-		GFF2993	0.85	-0.2
3,052,026	+		GFF2993	0.86	-1.4
3,052,054	+		GFF2993	0.88	-0.3
3,052,062	-		GFF2993	0.88	-1.3
3,052,107	-				-0.5
3,052,110	+				-0.7
3,052,118	-				-1.3
3,052,118	-				-0.0
3,052,124	-				-1.4
3,052,128	-				+1.1
3,052,134	-				+0.0
3,052,140	-				-0.9
3,052,174	+				-0.5
3,052,176	-				-0.4
3,052,185	+				-1.4
3,052,185	+				-0.0
3,052,185	+				+0.5
3,052,185	+				-0.6
3,052,185	+				-0.7
3,052,185	+				-0.3
3,052,185	+				-0.4
3,052,185	+				+0.4
3,052,185	+				-2.4
3,052,193	-				+0.1
3,052,193	-				+0.7
3,052,193	-				-1.0
3,052,193	-				-2.4
3,052,193	-				-0.8
3,052,193	-				-1.4
3,052,195	+				+0.0
3,052,222	+				+0.2
3,052,222	+				-1.3
3,052,222	+				-1.5
3,052,230	-				-0.0
3,052,230	-				+0.1
3,052,230	-				-0.3
3,052,230	-				+0.8
3,052,264	+				+0.8
3,052,272	-				-0.8
3,052,280	-				-1.4
3,052,304	-				+0.4
3,052,314	+				+1.0
3,052,332	+				-1.2
3,052,332	+				+0.9
3,052,332	+				+1.1
3,052,332	+				-2.3
3,052,353	+				-2.7
3,052,355	-				-1.4
3,052,386	+				+0.0
3,052,448	-				-1.6
3,052,449	-				-0.1
3,052,479	+				-0.8
3,052,488	+				-2.5
3,052,489	+				+1.4
3,052,521	+				+0.3
3,052,521	+				+0.0
3,052,522	+				-1.2
3,052,563	-				-1.0
3,052,565	+				+0.5
3,052,565	+				-2.4
3,052,565	+				-0.6
3,052,573	-		GFF2994	0.11	-1.2
3,052,573	-		GFF2994	0.11	-0.8
3,052,573	-		GFF2994	0.11	-1.4
3,052,601	+		GFF2994	0.14	-0.9
3,052,601	+		GFF2994	0.14	-0.2
3,052,602	+		GFF2994	0.14	-1.3
3,052,602	+		GFF2994	0.14	-0.5
3,052,610	+		GFF2994	0.15	-0.2
3,052,610	-		GFF2994	0.15	-1.7
3,052,610	-		GFF2994	0.15	+0.6
3,052,610	-		GFF2994	0.15	-0.3
3,052,617	+		GFF2994	0.16	+0.2
3,052,625	-		GFF2994	0.17	-0.1
3,052,662	+		GFF2994	0.21	-0.7
3,052,663	+		GFF2994	0.21	-1.4
3,052,663	+		GFF2994	0.21	-0.4
3,052,663	+		GFF2994	0.21	-1.1
3,052,671	-		GFF2994	0.22	-2.7
3,052,671	-		GFF2994	0.22	+1.6
3,052,671	-		GFF2994	0.22	+0.4
3,052,671	-		GFF2994	0.22	+1.0
3,052,671	-		GFF2994	0.22	+0.5
3,052,692	-		GFF2994	0.24	-1.0
3,052,709	+		GFF2994	0.26	-0.3
3,052,709	+		GFF2994	0.26	-0.2
3,052,727	-		GFF2994	0.28	-1.8
3,052,727	-		GFF2994	0.28	-0.1
3,052,739	+		GFF2994	0.30	-0.6
3,052,749	+		GFF2994	0.31	-1.1
3,052,758	+		GFF2994	0.32	+0.0
3,052,765	+		GFF2994	0.33	+0.0
3,052,765	+		GFF2994	0.33	-1.2
3,052,769	+		GFF2994	0.33	-0.2
3,052,772	-		GFF2994	0.34	+0.6
3,052,776	-		GFF2994	0.34	-0.4
3,052,777	+		GFF2994	0.34	-2.3
3,052,777	-		GFF2994	0.34	+0.7
3,052,779	+		GFF2994	0.34	+0.6
3,052,786	+		GFF2994	0.35	-1.2
3,052,786	-		GFF2994	0.35	+0.3
3,052,788	-		GFF2994	0.36	+0.4
3,052,793	-		GFF2994	0.36	-0.3
3,052,835	-		GFF2994	0.41	-0.1
3,052,857	-		GFF2994	0.44	-0.1
3,052,876	-		GFF2994	0.46	-0.2
3,052,895	-		GFF2994	0.48	+0.9
3,052,919	+		GFF2994	0.51	-1.7
3,052,925	-		GFF2994	0.51	+1.4
3,052,942	+		GFF2994	0.53	-0.1
3,052,956	-		GFF2994	0.55	-1.6
3,052,968	+		GFF2994	0.56	+1.0
3,052,981	+		GFF2994	0.58	-0.7
3,053,008	+		GFF2994	0.61	-1.5
3,053,016	+		GFF2994	0.62	+0.3
3,053,036	-		GFF2994	0.64	+0.4
3,053,060	+		GFF2994	0.67	+0.4
3,053,078	+		GFF2994	0.69	-1.7
3,053,093	+		GFF2994	0.71	+1.3
3,053,099	+		GFF2994	0.72	+0.8
3,053,099	+		GFF2994	0.72	+0.3
3,053,115	+		GFF2994	0.74	+0.4
3,053,128	+		GFF2994	0.75	-1.6
3,053,145	-		GFF2994	0.77	-0.9
3,053,156	+		GFF2994	0.78	-0.6
3,053,156	+		GFF2994	0.78	-0.1
3,053,164	+		GFF2994	0.79	+0.7
3,053,174	+		GFF2994	0.80	+1.9
3,053,174	+		GFF2994	0.80	+0.4
3,053,174	-		GFF2994	0.80	-0.5
3,053,180	+		GFF2994	0.81	+0.3
3,053,182	-		GFF2994	0.81	-0.8
3,053,182	-		GFF2994	0.81	+0.0
3,053,188	-		GFF2994	0.82	+0.1
3,053,190	+		GFF2994	0.82	-0.3
3,053,190	+		GFF2994	0.82	+0.6
3,053,193	-		GFF2994	0.83	-2.4
3,053,209	-		GFF2994	0.84	-2.2
3,053,209	-		GFF2994	0.84	-0.2
3,053,256	-		GFF2994	0.90	+0.2
3,053,283	-				-0.5
3,053,291	+				+1.0
3,053,299	-				-0.1
3,053,299	-				+1.1
3,053,307	-				-0.1
3,053,323	+				-0.4
3,053,342	+				-0.3
3,053,342	+				-2.0
3,053,342	+				-2.7
3,053,345	-				+0.1
3,053,350	-				+0.1
3,053,361	+				-0.3
3,053,362	+				+0.5
3,053,369	-				-1.7
3,053,371	-				-1.8
3,053,387	+				+1.6
3,053,387	+				+0.1
3,053,387	+				-0.8
3,053,387	+				-2.1
3,053,389	-				-0.1
3,053,395	-				+0.2
3,053,397	+				+0.4
3,053,467	+		GFF2995	0.11	-0.4
3,053,467	+		GFF2995	0.11	-1.4
3,053,475	-		GFF2995	0.11	-0.9
3,053,475	-		GFF2995	0.11	-0.2
3,053,479	+		GFF2995	0.12	+0.4
3,053,484	+		GFF2995	0.12	-1.6
3,053,484	+		GFF2995	0.12	+0.6
3,053,487	-		GFF2995	0.12	+0.4
3,053,489	+		GFF2995	0.13	-0.8
3,053,497	-		GFF2995	0.13	-0.6
3,053,497	-		GFF2995	0.13	-0.8
3,053,502	+		GFF2995	0.14	+0.4
3,053,502	-		GFF2995	0.14	+0.6
3,053,502	-		GFF2995	0.14	-0.4
3,053,531	+		GFF2995	0.16	+0.0
3,053,531	+		GFF2995	0.16	+0.5
3,053,536	+		GFF2995	0.17	+0.7
3,053,550	+		GFF2995	0.18	+0.2
3,053,550	+		GFF2995	0.18	+0.5
3,053,551	-		GFF2995	0.18	+1.0
3,053,557	+		GFF2995	0.19	+2.5
3,053,557	+		GFF2995	0.19	-2.4
3,053,564	+		GFF2995	0.19	+1.4
3,053,565	-		GFF2995	0.19	+0.5
3,053,592	-		GFF2995	0.22	-2.3
3,053,606	+		GFF2995	0.23	+1.3
3,053,630	+		GFF2995	0.25	+0.9
3,053,630	+		GFF2995	0.25	-1.3
3,053,630	+		GFF2995	0.25	-1.8
3,053,631	-		GFF2995	0.25	-1.2
3,053,631	-		GFF2995	0.25	-0.1
3,053,631	-		GFF2995	0.25	-0.3
3,053,636	-		GFF2995	0.25	+0.5
3,053,638	-		GFF2995	0.26	+0.0
3,053,669	+		GFF2995	0.28	-3.1
3,053,669	+		GFF2995	0.28	-0.4
3,053,669	+		GFF2995	0.28	-0.5
3,053,674	+		GFF2995	0.29	-0.9
3,053,674	+		GFF2995	0.29	+1.0
3,053,682	-		GFF2995	0.29	-1.2
3,053,713	+		GFF2995	0.32	+1.2
3,053,731	-		GFF2995	0.34	+0.2
3,053,778	+		GFF2995	0.38	+1.0
3,053,778	+		GFF2995	0.38	-0.5
3,053,778	+		GFF2995	0.38	-1.2
3,053,786	-		GFF2995	0.38	+0.0
3,053,786	-		GFF2995	0.38	-2.2
3,053,786	-		GFF2995	0.38	-0.4
3,053,793	+		GFF2995	0.39	-1.4
3,053,795	+		GFF2995	0.39	-1.3
3,053,795	+		GFF2995	0.39	-1.3
3,053,795	+		GFF2995	0.39	+0.9
3,053,795	+		GFF2995	0.39	-0.9
3,053,795	+		GFF2995	0.39	+1.3
3,053,795	+		GFF2995	0.39	-0.2
3,053,795	+		GFF2995	0.39	-0.6
3,053,795	+		GFF2995	0.39	-0.5
3,053,795	+		GFF2995	0.39	-2.0
3,053,795	+		GFF2995	0.39	-0.9
3,053,795	+		GFF2995	0.39	+0.2
3,053,795	+		GFF2995	0.39	-1.5
3,053,795	+		GFF2995	0.39	+1.0
3,053,795	+		GFF2995	0.39	+0.4
3,053,795	+		GFF2995	0.39	+0.6
3,053,795	+		GFF2995	0.39	-1.4
3,053,795	+		GFF2995	0.39	-1.1
3,053,795	+		GFF2995	0.39	-0.5
3,053,795	+		GFF2995	0.39	-0.6
3,053,795	+		GFF2995	0.39	+0.7
3,053,795	+		GFF2995	0.39	+0.8
3,053,802	-		GFF2995	0.40	-0.8
3,053,803	-		GFF2995	0.40	-1.4
3,053,803	-		GFF2995	0.40	-1.5
3,053,803	-		GFF2995	0.40	-1.9
3,053,803	-		GFF2995	0.40	-2.1
3,053,803	-		GFF2995	0.40	+0.5
3,053,803	-		GFF2995	0.40	-0.1
3,053,803	-		GFF2995	0.40	-0.2
3,053,803	-		GFF2995	0.40	+0.6
3,053,803	-		GFF2995	0.40	+0.9
3,053,803	-		GFF2995	0.40	+0.3
3,053,803	-		GFF2995	0.40	-0.3
3,053,803	-		GFF2995	0.40	-1.3
3,053,803	-		GFF2995	0.40	+0.8
3,053,803	-		GFF2995	0.40	-1.1
3,053,803	-		GFF2995	0.40	-1.4
3,053,803	-		GFF2995	0.40	-1.9
3,053,803	-		GFF2995	0.40	-1.1
3,053,803	-		GFF2995	0.40	-2.4
3,053,803	-		GFF2995	0.40	+0.7
3,053,823	-		GFF2995	0.42	+0.6
3,053,827	+		GFF2995	0.42	-0.3
3,053,827	+		GFF2995	0.42	-0.3
3,053,828	-		GFF2995	0.42	+1.3
3,053,842	+		GFF2995	0.43	-1.2
3,053,847	+		GFF2995	0.44	-0.3
3,053,851	-		GFF2995	0.44	-2.3
3,053,871	-		GFF2995	0.46	-0.5
3,053,942	+		GFF2995	0.52	-0.3
3,053,952	+		GFF2995	0.53	-2.0
3,053,960	-		GFF2995	0.54	-0.4
3,053,960	-		GFF2995	0.54	-0.8
3,053,960	-		GFF2995	0.54	-0.8
3,053,970	+		GFF2995	0.54	+0.7
3,053,970	+		GFF2995	0.54	-2.3
3,053,970	+		GFF2995	0.54	-0.8
3,053,970	+		GFF2995	0.54	+0.6
3,053,974	-		GFF2995	0.55	-1.8
3,053,979	+		GFF2995	0.55	-0.1
3,053,979	+		GFF2995	0.55	-2.9
3,053,987	-		GFF2995	0.56	+0.3
3,054,005	+		GFF2995	0.58	-0.7
3,054,005	+		GFF2995	0.58	+0.3
3,054,013	-		GFF2995	0.58	+1.4
3,054,013	-		GFF2995	0.58	+1.2
3,054,021	+		GFF2995	0.59	+0.3
3,054,029	-		GFF2995	0.60	-0.5
3,054,029	-		GFF2995	0.60	-0.4
3,054,039	+		GFF2995	0.60	+0.7
3,054,044	+		GFF2995	0.61	-0.9
3,054,044	+		GFF2995	0.61	-0.4
3,054,046	-		GFF2995	0.61	-1.7
3,054,052	-		GFF2995	0.62	-0.0
3,054,059	+		GFF2995	0.62	+0.1
3,054,059	+		GFF2995	0.62	-0.3
3,054,059	+		GFF2995	0.62	-1.8
3,054,062	+		GFF2995	0.62	+0.5
3,054,062	+		GFF2995	0.62	-1.5
3,054,067	-		GFF2995	0.63	-0.3
3,054,070	-		GFF2995	0.63	+0.1
3,054,072	+		GFF2995	0.63	-2.1
3,054,076	+		GFF2995	0.64	+1.2
3,054,100	-		GFF2995	0.66	-0.2
3,054,104	+		GFF2995	0.66	-1.7
3,054,104	+		GFF2995	0.66	-2.9
3,054,137	-		GFF2995	0.69	-0.6
3,054,144	-		GFF2995	0.70	+0.1
3,054,149	+		GFF2995	0.70	-0.5
3,054,157	-		GFF2995	0.71	-0.4
3,054,174	+		GFF2995	0.72	+1.4
3,054,194	-		GFF2995	0.74	-0.5
3,054,216	+		GFF2995	0.76	-2.2
3,054,221	+		GFF2995	0.76	-1.1
3,054,238	+		GFF2995	0.78	+0.2
3,054,244	+		GFF2995	0.78	+0.5
3,054,247	+		GFF2995	0.79	-1.7
3,054,247	-		GFF2995	0.79	-0.8
3,054,263	+		GFF2995	0.80	+0.6
3,054,272	+		GFF2995	0.81	+0.5
3,054,272	+		GFF2995	0.81	+1.3
3,054,281	+		GFF2995	0.82	+1.0
3,054,293	+		GFF2995	0.83	+0.2
3,054,313	+		GFF2995	0.84	-0.1
3,054,316	-		GFF2995	0.85	-1.6
3,054,321	-		GFF2995	0.85	-0.2
3,054,333	+		GFF2995	0.86	+0.3
3,054,339	+		GFF2995	0.87	+0.1
3,054,341	+		GFF2995	0.87	+0.3
3,054,341	+		GFF2995	0.87	-0.6
3,054,341	-		GFF2995	0.87	+0.1