Strain Fitness in Sphingobium sp. HT1-2 around GFF2940

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,009,833	+		GFF2938	0.45	+0.0
3,009,833	+		GFF2938	0.45	+0.1
3,009,833	+		GFF2938	0.45	-1.2
3,009,841	-		GFF2938	0.46	+0.7
3,009,850	-		GFF2938	0.48	-1.2
3,009,857	+		GFF2938	0.49	+0.2
3,009,857	+		GFF2938	0.49	-0.9
3,009,857	+		GFF2938	0.49	+0.2
3,009,858	-		GFF2938	0.49	-0.6
3,009,860	-		GFF2938	0.50	-1.0
3,009,860	-		GFF2938	0.50	+0.0
3,009,865	-		GFF2938	0.50	+1.0
3,009,909	+		GFF2938	0.58	-0.1
3,009,917	-		GFF2938	0.59	-1.7
3,009,929	+		GFF2938	0.61	-0.9
3,009,960	-		GFF2938	0.66	-1.1
3,009,985	+		GFF2938	0.71	+0.5
3,009,994	+		GFF2938	0.72	-0.4
3,010,032	-		GFF2938	0.78	-0.3
3,010,069	+		GFF2938	0.85	-1.6
3,010,077	-		GFF2938	0.86	+0.8
3,010,100	+		GFF2938	0.90	-1.6
3,010,110	+				-1.2
3,010,115	-				-0.0
3,010,131	+				+1.5
3,010,131	+				-0.2
3,010,150	+				-0.2
3,010,150	+				-0.6
3,010,295	+				-0.4
3,010,301	+				-1.2
3,010,301	+				-0.2
3,010,303	-				+0.7
3,010,306	+				-1.4
3,010,317	-				-2.0
3,010,341	+				+0.1
3,010,341	+				-0.4
3,010,342	-				-0.4
3,010,346	+				+1.1
3,010,349	-				+0.6
3,010,354	-				-0.4
3,010,354	-				-0.0
3,010,354	-				+1.1
3,010,356	+				-0.1
3,010,359	+				-1.3
3,010,359	-				-1.1
3,010,364	-				-1.5
3,010,379	-				+0.2
3,010,404	+		GFF2939	0.26	-0.2
3,010,404	+		GFF2939	0.26	+0.2
3,010,404	+		GFF2939	0.26	-1.3
3,010,412	-		GFF2939	0.32	+0.2
3,010,460	+		GFF2939	0.74	+0.4
3,010,460	+		GFF2939	0.74	+0.2
3,010,468	-		GFF2939	0.80	+1.0
3,010,468	-		GFF2939	0.80	+0.0
3,010,468	-		GFF2939	0.80	+0.1
3,010,468	-		GFF2939	0.80	-1.6
3,010,468	-		GFF2939	0.80	-1.8
3,010,468	-		GFF2939	0.80	-1.2
3,010,468	-		GFF2939	0.80	+0.3
3,010,471	+		GFF2939	0.83	-1.8
3,010,483	+				-0.6
3,010,484	+				-3.2
3,010,484	+				-0.4
3,010,484	+				-0.7
3,010,484	+				+0.2
3,010,484	+				+0.9
3,010,484	+				-0.2
3,010,484	+				+0.1
3,010,484	+				-1.5
3,010,484	+				+0.6
3,010,484	+				+0.6
3,010,484	+				-0.6
3,010,484	+				+0.4
3,010,484	+				-0.7
3,010,484	+				-1.3
3,010,484	+				+0.4
3,010,484	+				-0.7
3,010,484	+				+0.4
3,010,484	+				-0.5
3,010,484	+				+0.5
3,010,484	+				-1.2
3,010,484	+				-1.4
3,010,484	+				-0.1
3,010,484	+				+0.4
3,010,484	+				+0.6
3,010,484	+				+0.4
3,010,484	+				+0.7
3,010,484	+				-1.3
3,010,484	+				-0.1
3,010,484	+				+0.8
3,010,484	+				-2.2
3,010,484	+				-0.2
3,010,484	+				+0.6
3,010,484	+				-1.0
3,010,484	+				-0.7
3,010,492	-				-0.0
3,010,492	-				-0.1
3,010,492	-				-1.3
3,010,492	-				-0.8
3,010,492	-				+0.1
3,010,492	-				-1.5
3,010,492	-				-0.2
3,010,492	-				-0.3
3,010,492	-				-1.9
3,010,492	-				+0.6
3,010,492	-				+0.6
3,010,492	-				-0.2
3,010,492	-				-1.3
3,010,492	-				-0.6
3,010,492	-				-1.9
3,010,492	-				-0.5
3,010,492	-				-0.2
3,010,492	-				+0.7
3,010,492	-				-1.7
3,010,492	-				-0.4
3,010,492	-				-1.2
3,010,492	-				-1.1
3,010,492	-				+1.6
3,010,492	-				-2.8
3,010,492	-				+1.5
3,010,492	-				-1.3
3,010,492	-				+1.0
3,010,492	-				+0.4
3,010,492	-				+0.5
3,010,492	-				-1.6
3,010,492	-				-1.1
3,010,492	-				-1.4
3,010,492	-				-0.1
3,010,492	-				+0.3
3,010,492	-				-0.2
3,010,492	-				-2.0
3,010,492	-				-1.1
3,010,494	+				-1.4
3,010,494	+				-1.1
3,010,502	-				+0.9
3,010,502	-				-1.0
3,010,516	-				-1.7
3,010,526	-				-0.2
3,010,526	-				+0.1
3,010,539	+				+0.8
3,010,545	+				+0.3
3,010,553	-				+1.0
3,010,561	-				-1.5
3,010,561	-				-0.9
3,010,586	+				+0.3
3,010,594	-				+0.8
3,010,624	-				-0.6
3,010,660	-				+0.8
3,010,667	+				-2.3
3,010,667	+				-0.0
3,010,731	+				+0.7
3,010,734	-				+1.5
3,010,740	-				+0.0
3,010,740	-				-0.4
3,010,753	-				-1.0
3,010,766	-				+0.2
3,010,767	+				+0.7
3,010,811	+				+0.4
3,010,819	-		GFF2940	0.11	-0.1
3,010,827	+		GFF2940	0.16	-1.3
3,010,833	+		GFF2940	0.19	-2.6
3,010,833	+		GFF2940	0.19	+1.1
3,010,841	+		GFF2940	0.23	-0.8
3,010,841	-		GFF2940	0.23	-3.0
3,010,841	-		GFF2940	0.23	-0.0
3,010,841	-		GFF2940	0.23	+0.3
3,010,842	+		GFF2940	0.24	+0.6
3,010,863	+		GFF2940	0.36	-2.0
3,010,875	-		GFF2940	0.42	-1.2
3,010,900	-		GFF2940	0.56	+0.8
3,010,928	+		GFF2940	0.72	+0.1
3,010,928	+		GFF2940	0.72	-1.4
3,010,928	+		GFF2940	0.72	-1.5
3,010,928	+		GFF2940	0.72	+0.5
3,010,933	+		GFF2940	0.74	+1.6
3,010,936	-		GFF2940	0.76	-1.4
3,010,950	+		GFF2940	0.84	-0.4
3,010,950	+		GFF2940	0.84	+1.4
3,010,950	+		GFF2940	0.84	+1.0
3,010,950	+		GFF2940	0.84	-0.6
3,010,950	+		GFF2940	0.84	+0.3
3,010,950	+		GFF2940	0.84	-0.0
3,010,950	+		GFF2940	0.84	-0.0
3,010,950	+		GFF2940	0.84	-1.5
3,010,958	-		GFF2940	0.88	-0.6
3,010,958	-		GFF2940	0.88	+0.2
3,010,958	-		GFF2940	0.88	+0.3
3,010,958	-		GFF2940	0.88	-0.2
3,010,958	-		GFF2940	0.88	+0.7
3,010,958	-		GFF2940	0.88	-0.1
3,010,958	-		GFF2940	0.88	+0.4
3,010,958	-		GFF2940	0.88	+0.0
3,010,958	-		GFF2940	0.88	-0.3
3,010,960	+		GFF2940	0.89	-0.7
3,010,960	+		GFF2940	0.89	+1.6
3,010,960	+		GFF2940	0.89	-0.1
3,010,960	+		GFF2940	0.89	+0.8
3,010,960	+		GFF2940	0.89	-0.3
3,010,960	+		GFF2940	0.89	-0.5
3,010,960	+		GFF2940	0.89	+0.3
3,010,960	+		GFF2940	0.89	-1.6
3,010,960	+		GFF2940	0.89	-0.5
3,010,960	+		GFF2940	0.89	+1.0
3,010,960	+		GFF2940	0.89	+0.5
3,010,960	+		GFF2940	0.89	-1.0
3,010,968	-				+0.1
3,010,968	-				-0.1
3,010,968	-				+0.3
3,010,968	-				+0.2
3,010,968	-				+0.3
3,010,968	-				+0.4
3,010,968	-				+0.9
3,010,968	-				+0.3
3,010,968	-				-0.8
3,010,968	-				-2.0
3,010,968	-				-1.5
3,010,968	-				-2.0
3,010,968	-				-0.5
3,010,968	-				-0.9
3,010,968	-				-1.4
3,010,968	-				-0.1
3,010,968	-				-0.2
3,010,968	-				-0.2
3,010,968	-				+0.6
3,010,968	-				-0.2
3,010,968	-				+0.3
3,010,968	-				+1.3
3,010,968	-				+0.1
3,010,968	-				+1.3
3,010,968	-				-1.0
3,010,968	-				-0.5
3,010,968	-				+0.4
3,010,970	+				+0.2
3,010,983	-				+0.4
3,010,985	+				-0.3
3,010,985	+				-1.6
3,010,998	-				-0.6
3,011,024	-		GFF2941	0.20	-0.4
3,011,052	+		GFF2941	0.32	+0.0
3,011,060	-		GFF2941	0.35	-0.6
3,011,064	+		GFF2941	0.37	-2.0
3,011,064	+		GFF2941	0.37	-1.0
3,011,064	+		GFF2941	0.37	+0.8
3,011,067	-		GFF2941	0.38	+0.4
3,011,072	-		GFF2941	0.40	-0.4
3,011,072	-		GFF2941	0.40	-0.6
3,011,096	+		GFF2941	0.50	-0.3
3,011,105	+		GFF2941	0.54	-1.5
3,011,118	-		GFF2941	0.60	-1.0
3,011,118	-		GFF2941	0.60	-2.0
3,011,118	-		GFF2941	0.60	-0.0
3,011,137	+		GFF2941	0.68	-1.9
3,011,144	+		GFF2941	0.71	-2.0
3,011,144	+		GFF2941	0.71	+0.1
3,011,149	+		GFF2941	0.73	-0.1
3,011,149	+		GFF2941	0.73	+0.8
3,011,149	+		GFF2941	0.73	+1.0
3,011,152	-		GFF2941	0.74	-1.3
3,011,152	-		GFF2941	0.74	-0.0
3,011,154	+		GFF2941	0.75	-1.5
3,011,154	+		GFF2941	0.75	+1.8
3,011,157	-		GFF2941	0.76	+0.3
3,011,162	-		GFF2941	0.79	-0.5
3,011,168	+		GFF2941	0.81	-2.1
3,011,168	+		GFF2941	0.81	-2.5
3,011,168	+		GFF2941	0.81	+0.9
3,011,168	+		GFF2941	0.81	-0.4
3,011,168	+		GFF2941	0.81	-0.9
3,011,168	+		GFF2941	0.81	+0.0
3,011,168	+		GFF2941	0.81	-0.8
3,011,168	+		GFF2941	0.81	+0.3
3,011,171	-		GFF2941	0.82	+0.8
3,011,171	-		GFF2941	0.82	+0.3
3,011,176	-		GFF2941	0.85	+1.0
3,011,176	-		GFF2941	0.85	+0.6
3,011,176	-		GFF2941	0.85	-2.8
3,011,176	-		GFF2941	0.85	+0.2
3,011,176	-		GFF2941	0.85	+1.5
3,011,194	+				-1.4
3,011,210	+				+0.5
3,011,210	+				+0.2
3,011,212	+				+0.7
3,011,227	-				+1.1
3,011,231	-				-0.8
3,011,251	-				-0.4
3,011,253	+				-0.9
3,011,281	+				-1.4
3,011,281	+				+0.7
3,011,286	+				+1.4
3,011,289	-				+0.5
3,011,309	+				-0.7
3,011,366	-				-1.2
3,011,366	-				-1.6
3,011,368	+				+0.2
3,011,368	+				-1.9
3,011,405	+				-0.1
3,011,407	+				-2.4
3,011,407	+				-0.4
3,011,413	-				+0.2
3,011,417	+				+1.0
3,011,418	+				+0.0
3,011,427	+				-1.0
3,011,430	-				+0.6
3,011,430	-				+0.6
3,011,475	-				-1.7
3,011,509	+				+0.6
3,011,567	-		GFF2942	0.15	-0.7
3,011,580	+		GFF2942	0.18	+0.1
3,011,588	-		GFF2942	0.20	+0.1
3,011,637	-		GFF2942	0.32	+0.3
3,011,770	-		GFF2942	0.65	-1.2
3,011,777	-		GFF2942	0.67	-1.0
3,011,782	+		GFF2942	0.68	-1.6
3,011,782	+		GFF2942	0.68	-0.4
3,011,800	+		GFF2942	0.73	-1.2
3,011,800	+		GFF2942	0.73	+0.7
3,011,800	+		GFF2942	0.73	+0.2
3,011,805	+		GFF2942	0.74	+2.3
3,011,808	-		GFF2942	0.75	-2.9
3,011,808	-		GFF2942	0.75	-0.9
3,011,808	-		GFF2942	0.75	-0.7
3,011,810	+		GFF2942	0.75	-0.3
3,011,810	+		GFF2942	0.75	+1.4
3,011,810	+		GFF2942	0.75	-0.0
3,011,810	+		GFF2942	0.75	-1.5
3,011,818	-		GFF2942	0.77	-0.1
3,011,818	-		GFF2942	0.77	-0.9
3,011,818	-		GFF2942	0.77	+2.0
3,011,818	-		GFF2942	0.77	-1.0
3,011,827	-		GFF2942	0.79	+1.2
3,011,835	+		GFF2942	0.81	-0.3
3,011,845	-		GFF2942	0.84	+0.3
3,011,852	+		GFF2942	0.86	-2.6
3,011,853	-		GFF2942	0.86	+0.2
3,011,860	-		GFF2942	0.88	+0.9
3,011,894	-				+0.2
3,011,902	-				-0.7
3,011,915	+				+0.3
3,011,964	+				-0.2
3,011,970	+				-2.2
3,011,972	-				-0.3
3,011,972	-				+1.1