Strain Fitness in Sphingobium sp. HT1-2 around GFF2924

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,996,396	-		GFF2923	0.56	-0.8
2,996,421	+		GFF2923	0.57	+0.1
2,996,426	+		GFF2923	0.57	+0.3
2,996,426	+		GFF2923	0.57	-2.3
2,996,426	+		GFF2923	0.57	+1.2
2,996,429	-		GFF2923	0.57	+0.3
2,996,434	-		GFF2923	0.57	-1.7
2,996,434	-		GFF2923	0.57	-0.3
2,996,434	-		GFF2923	0.57	+0.3
2,996,434	-		GFF2923	0.57	+1.3
2,996,434	-		GFF2923	0.57	+0.5
2,996,434	-		GFF2923	0.57	+0.3
2,996,434	-		GFF2923	0.57	+0.7
2,996,434	-		GFF2923	0.57	-1.8
2,996,446	+		GFF2923	0.58	+0.2
2,996,454	-		GFF2923	0.58	-0.8
2,996,454	-		GFF2923	0.58	-0.2
2,996,473	+		GFF2923	0.59	-0.2
2,996,473	+		GFF2923	0.59	+0.8
2,996,473	+		GFF2923	0.59	-0.4
2,996,481	-		GFF2923	0.60	-0.5
2,996,481	-		GFF2923	0.60	-0.2
2,996,481	-		GFF2923	0.60	-0.7
2,996,481	-		GFF2923	0.60	+0.7
2,996,481	-		GFF2923	0.60	-1.9
2,996,538	+		GFF2923	0.62	-1.0
2,996,538	+		GFF2923	0.62	+1.3
2,996,538	+		GFF2923	0.62	-0.4
2,996,538	+		GFF2923	0.62	+0.9
2,996,538	+		GFF2923	0.62	-0.9
2,996,538	+		GFF2923	0.62	+0.1
2,996,538	+		GFF2923	0.62	-1.1
2,996,538	+		GFF2923	0.62	-0.4
2,996,538	+		GFF2923	0.62	-0.2
2,996,538	+		GFF2923	0.62	+0.4
2,996,538	+		GFF2923	0.62	-1.4
2,996,538	+		GFF2923	0.62	+0.1
2,996,538	+		GFF2923	0.62	-0.3
2,996,538	+		GFF2923	0.62	-0.6
2,996,538	+		GFF2923	0.62	+0.9
2,996,538	+		GFF2923	0.62	-1.1
2,996,538	+		GFF2923	0.62	-0.1
2,996,538	+		GFF2923	0.62	-1.6
2,996,538	+		GFF2923	0.62	+0.6
2,996,538	+		GFF2923	0.62	-0.0
2,996,546	-		GFF2923	0.62	-0.4
2,996,546	-		GFF2923	0.62	-0.4
2,996,546	-		GFF2923	0.62	+0.5
2,996,546	-		GFF2923	0.62	-1.1
2,996,546	-		GFF2923	0.62	-0.9
2,996,546	-		GFF2923	0.62	-0.2
2,996,546	-		GFF2923	0.62	-2.1
2,996,546	-		GFF2923	0.62	-0.3
2,996,546	-		GFF2923	0.62	-0.5
2,996,546	-		GFF2923	0.62	+0.3
2,996,546	-		GFF2923	0.62	+1.3
2,996,546	-		GFF2923	0.62	+2.0
2,996,546	-		GFF2923	0.62	+0.7
2,996,546	-		GFF2923	0.62	-0.4
2,996,546	-		GFF2923	0.62	+0.5
2,996,546	-		GFF2923	0.62	-0.3
2,996,546	-		GFF2923	0.62	+1.5
2,996,569	+		GFF2923	0.63	+0.7
2,996,594	+		GFF2923	0.65	-1.0
2,996,602	-		GFF2923	0.65	+0.3
2,996,619	-		GFF2923	0.66	-0.9
2,996,663	+		GFF2923	0.68	-0.5
2,996,670	+		GFF2923	0.68	-0.2
2,996,679	-		GFF2923	0.68	+0.3
2,996,697	-		GFF2923	0.69	-0.0
2,996,737	+		GFF2923	0.71	-0.3
2,996,768	-		GFF2923	0.72	+0.0
2,996,778	-		GFF2923	0.73	-0.5
2,996,778	-		GFF2923	0.73	-1.8
2,996,792	-		GFF2923	0.73	-0.2
2,996,813	-		GFF2923	0.74	-0.0
2,996,818	-		GFF2923	0.75	+0.4
2,996,824	-		GFF2923	0.75	+0.2
2,996,854	-		GFF2923	0.76	-0.2
2,996,860	-		GFF2923	0.76	-0.2
2,996,868	+		GFF2923	0.77	+0.3
2,996,868	-		GFF2923	0.77	-0.2
2,996,874	+		GFF2923	0.77	+0.8
2,996,874	+		GFF2923	0.77	-0.1
2,996,877	-		GFF2923	0.77	+0.0
2,996,936	+		GFF2923	0.80	-0.7
2,996,944	-		GFF2923	0.80	+0.5
2,996,947	+		GFF2923	0.80	+0.1
2,996,950	-		GFF2923	0.80	-1.0
2,996,952	+		GFF2923	0.81	-1.1
2,996,967	-		GFF2923	0.81	-0.3
2,996,980	+		GFF2923	0.82	-1.7
2,996,988	-		GFF2923	0.82	-0.2
2,997,005	+		GFF2923	0.83	-0.3
2,997,013	-		GFF2923	0.83	+0.2
2,997,016	-		GFF2923	0.83	-0.2
2,997,039	+		GFF2923	0.84	+0.0
2,997,045	+		GFF2923	0.85	-2.0
2,997,045	+		GFF2923	0.85	+0.6
2,997,047	-		GFF2923	0.85	+0.4
2,997,048	-		GFF2923	0.85	-1.4
2,997,050	+		GFF2923	0.85	+1.2
2,997,057	-		GFF2923	0.85	+0.4
2,997,057	-		GFF2923	0.85	-2.6
2,997,091	+		GFF2923	0.87	-1.8
2,997,099	-		GFF2923	0.87	-0.2
2,997,099	-		GFF2923	0.87	-1.1
2,997,101	+		GFF2923	0.87	-1.9
2,997,119	+		GFF2923	0.88	-0.3
2,997,122	-		GFF2923	0.88	-1.1
2,997,127	-		GFF2923	0.88	+1.9
2,997,152	+		GFF2923	0.89	+1.1
2,997,168	+				-1.8
2,997,168	+				+0.4
2,997,168	+				-0.6
2,997,168	+				+1.4
2,997,169	-				-1.4
2,997,176	+				+1.3
2,997,176	-				-2.1
2,997,176	-				-0.5
2,997,176	-				+0.0
2,997,241	+				+0.6
2,997,249	-				-2.5
2,997,256	+				+0.7
2,997,266	+				-0.2
2,997,266	+				-0.4
2,997,274	-				-1.3
2,997,274	-				+0.5
2,997,274	-				+0.2
2,997,284	+				-0.3
2,997,285	-				+0.0
2,997,287	-				+0.6
2,997,289	-				-0.2
2,997,294	-				-1.2
2,997,294	-				-0.6
2,997,302	-				-1.3
2,997,317	+				-0.1
2,997,319	+				+0.0
2,997,403	-				-0.7
2,997,408	-				+0.6
2,997,413	-				-1.0
2,997,417	-				-0.1
2,997,418	+				-1.4
2,997,418	+				-0.5
2,997,418	+				-0.5
2,997,418	+				-1.5
2,997,418	+				-0.7
2,997,423	+				+2.0
2,997,423	+				-0.2
2,997,426	-				-1.4
2,997,426	-				-0.6
2,997,426	-				+0.7
2,997,426	-				+1.7
2,997,426	-				+0.7
2,997,426	-				-0.6
2,997,431	-				+0.2
2,997,431	-				+0.7
2,997,433	+				-2.0
2,997,436	-				-0.4
2,997,436	-				-0.8
2,997,436	-				+0.9
2,997,449	-		GFF2924	0.12	+0.5
2,997,461	+		GFF2924	0.14	+0.9
2,997,461	+		GFF2924	0.14	-0.7
2,997,461	+		GFF2924	0.14	+0.0
2,997,461	+		GFF2924	0.14	+0.2
2,997,461	+		GFF2924	0.14	+0.2
2,997,461	+		GFF2924	0.14	+0.3
2,997,461	+		GFF2924	0.14	-0.3
2,997,469	-		GFF2924	0.16	-0.1
2,997,469	-		GFF2924	0.16	+0.4
2,997,469	-		GFF2924	0.16	+0.9
2,997,469	-		GFF2924	0.16	+0.5
2,997,469	-		GFF2924	0.16	+0.2
2,997,469	-		GFF2924	0.16	-0.0
2,997,469	-		GFF2924	0.16	-1.1
2,997,469	-		GFF2924	0.16	+0.1
2,997,557	-		GFF2924	0.33	+0.1
2,997,595	-		GFF2924	0.40	+1.0
2,997,597	+		GFF2924	0.40	+0.8
2,997,597	+		GFF2924	0.40	+0.5
2,997,597	+		GFF2924	0.40	-1.2
2,997,605	-		GFF2924	0.42	-1.0
2,997,605	-		GFF2924	0.42	+0.3
2,997,605	-		GFF2924	0.42	-0.5
2,997,625	-		GFF2924	0.46	+0.4
2,997,630	-		GFF2924	0.47	-0.1
2,997,653	-		GFF2924	0.51	-2.0
2,997,670	+		GFF2924	0.54	+0.3
2,997,675	+		GFF2924	0.55	+1.0
2,997,683	-		GFF2924	0.57	-0.7
2,997,694	+		GFF2924	0.59	-0.3
2,997,699	+		GFF2924	0.60	+1.2
2,997,707	-		GFF2924	0.61	+0.3
2,997,707	-		GFF2924	0.61	-0.4
2,997,707	-		GFF2924	0.61	+0.2
2,997,707	-		GFF2924	0.61	+0.3
2,997,715	+		GFF2924	0.63	-2.0
2,997,723	-		GFF2924	0.65	+0.1
2,997,723	-		GFF2924	0.65	+0.0
2,997,737	+		GFF2924	0.67	+0.5
2,997,743	+		GFF2924	0.68	+0.2
2,997,749	-		GFF2924	0.70	-0.7
2,997,751	-		GFF2924	0.70	-1.0
2,997,751	-		GFF2924	0.70	+0.3
2,997,753	-		GFF2924	0.70	+0.9
2,997,768	+		GFF2924	0.73	-1.6
2,997,774	+		GFF2924	0.74	+0.8
2,997,787	+		GFF2924	0.77	-2.1
2,997,787	-		GFF2924	0.77	-0.2
2,997,811	+		GFF2924	0.82	-0.5
2,997,819	-		GFF2924	0.83	-0.7
2,997,830	+		GFF2924	0.85	+0.1
2,997,842	+		GFF2924	0.87	+0.0
2,997,847	+		GFF2924	0.88	+1.0
2,997,847	+		GFF2924	0.88	-0.1
2,997,847	+		GFF2924	0.88	+1.5
2,997,850	-		GFF2924	0.89	+0.8
2,997,856	-				+0.1
2,997,860	+				+1.7
2,997,862	+				-0.1
2,997,867	+				+0.6
2,997,905	+				+1.1
2,997,934	+				-1.7
2,997,958	-				-0.8
2,997,981	+		GFF2925	0.14	+0.7
2,997,981	+		GFF2925	0.14	-1.2
2,997,981	+		GFF2925	0.14	+0.9
2,997,988	+		GFF2925	0.15	+1.4
2,997,988	+		GFF2925	0.15	-0.3
2,997,989	-		GFF2925	0.15	+0.0
2,997,991	-		GFF2925	0.16	-2.5
2,997,994	+		GFF2925	0.17	-0.3
2,998,020	+		GFF2925	0.22	-1.8
2,998,077	-		GFF2925	0.34	-0.7
2,998,104	+		GFF2925	0.40	-1.1
2,998,161	+		GFF2925	0.52	-1.1
2,998,161	+		GFF2925	0.52	-0.2
2,998,169	-		GFF2925	0.54	+0.2
2,998,169	-		GFF2925	0.54	-2.0
2,998,169	-		GFF2925	0.54	-1.0
2,998,169	-		GFF2925	0.54	-0.1
2,998,204	+		GFF2925	0.62	-0.9
2,998,213	-		GFF2925	0.64	-1.0
2,998,218	-		GFF2925	0.65	-0.4
2,998,227	+		GFF2925	0.67	-2.5
2,998,232	+		GFF2925	0.68	+0.3
2,998,232	+		GFF2925	0.68	+0.0
2,998,235	-		GFF2925	0.68	-0.1
2,998,237	+		GFF2925	0.69	-0.2
2,998,239	+		GFF2925	0.69	-0.4
2,998,240	-		GFF2925	0.69	+0.7
2,998,245	-		GFF2925	0.71	-2.1
2,998,245	-		GFF2925	0.71	-1.7
2,998,245	-		GFF2925	0.71	+0.1
2,998,271	-		GFF2925	0.76	-0.2
2,998,295	+		GFF2925	0.81	+0.7
2,998,300	+		GFF2925	0.82	+0.3
2,998,312	-		GFF2925	0.85	-0.1
2,998,326	-		GFF2925	0.88	+0.1
2,998,350	-				+0.3
2,998,355	-				-0.9
2,998,371	+				-0.1
2,998,411	+				-0.4
2,998,411	+				-1.1
2,998,411	+				-0.5
2,998,411	+				-1.9
2,998,419	-				+0.4
2,998,419	-				+0.3
2,998,419	-				-0.4
2,998,419	-				-1.7
2,998,429	-				+0.3
2,998,429	-				-1.5
2,998,433	+				-0.6
2,998,442	-				-0.4
2,998,448	+				+0.7
2,998,448	+				-1.2
2,998,448	+				+1.5
2,998,448	+				+0.0
2,998,448	+				-0.3
2,998,448	+				+0.3
2,998,448	+				-0.3
2,998,448	+				+1.3
2,998,456	-				+0.5
2,998,456	-				+0.9
2,998,456	-				+0.0
2,998,456	-				-1.8
2,998,456	-				-0.6
2,998,456	-				-0.3
2,998,456	-				+0.3
2,998,456	-				-0.1
2,998,458	+				+0.5
2,998,466	-				+0.3
2,998,466	-				-2.1
2,998,466	-				+0.4
2,998,468	+				-0.4
2,998,474	+				-1.2
2,998,476	-				+1.4
2,998,486	-				-0.6
2,998,520	+				+0.9
2,998,535	+				-0.5
2,998,535	-				-2.3
2,998,568	+				-0.3
2,998,568	+				-0.7
2,998,568	+				-0.3
2,998,568	+				-0.1
2,998,573	+				-0.7
2,998,573	+				-0.1
2,998,573	+				-0.4
2,998,573	+				-1.1
2,998,573	+				-0.1
2,998,573	+				-0.6
2,998,573	+				-1.4
2,998,574	+				+0.8
2,998,575	-				-1.5
2,998,576	-				-0.3
2,998,576	-				-0.7
2,998,576	-				-2.4
2,998,576	-				+1.3
2,998,576	-				-0.8
2,998,576	-				-1.1
2,998,576	-				-1.2
2,998,581	-				-0.5
2,998,581	-				-1.2
2,998,581	-				+0.1
2,998,581	-				-1.5
2,998,581	-				-0.5
2,998,581	-				-0.3
2,998,581	-				-0.0
2,998,581	-				-1.5
2,998,581	-				-0.6
2,998,581	-				+0.2
2,998,581	-				+0.0
2,998,583	+				-0.0
2,998,583	+				-0.8
2,998,593	+				+0.0
2,998,601	-				-2.2
2,998,601	-				+1.2
2,998,601	-				-0.5
2,998,601	-				+1.0
2,998,601	-				-0.3
2,998,601	-				-0.1
2,998,604	+				+0.5
2,998,617	+		GFF2926	0.10	-0.0
2,998,635	+		GFF2926	0.11	+0.3
2,998,640	+		GFF2926	0.11	-0.6
2,998,640	+		GFF2926	0.11	-0.2
2,998,640	+		GFF2926	0.11	-0.2
2,998,648	-		GFF2926	0.12	-1.7
2,998,648	-		GFF2926	0.12	+0.3
2,998,659	-		GFF2926	0.12	-0.8
2,998,671	-		GFF2926	0.13	-0.6
2,998,679	+		GFF2926	0.13	-2.0
2,998,679	+		GFF2926	0.13	+0.3
2,998,687	+		GFF2926	0.13	+0.8
2,998,687	-		GFF2926	0.13	-1.6
2,998,689	+		GFF2926	0.14	-0.0
2,998,694	+		GFF2926	0.14	-0.2
2,998,697	-		GFF2926	0.14	-0.3
2,998,697	-		GFF2926	0.14	+0.1
2,998,697	-		GFF2926	0.14	+0.6
2,998,721	-		GFF2926	0.15	+1.3
2,998,734	+		GFF2926	0.15	-0.3
2,998,744	-		GFF2926	0.16	-0.4
2,998,744	-		GFF2926	0.16	-1.1
2,998,749	-		GFF2926	0.16	-0.9
2,998,753	+		GFF2926	0.16	+0.9
2,998,753	+		GFF2926	0.16	+0.8
2,998,761	-		GFF2926	0.17	+0.7
2,998,761	-		GFF2926	0.17	+0.6
2,998,775	+		GFF2926	0.17	-1.6
2,998,785	+		GFF2926	0.18	-1.6
2,998,787	-		GFF2926	0.18	-0.5
2,998,788	-		GFF2926	0.18	-1.6
2,998,806	+		GFF2926	0.19	-0.6
2,998,811	-		GFF2926	0.19	-1.0
2,998,812	+		GFF2926	0.19	+0.3
2,998,814	-		GFF2926	0.19	+1.5
2,998,827	+		GFF2926	0.20	-0.5
2,998,832	+		GFF2926	0.20	-0.2
2,998,845	-		GFF2926	0.20	-0.4
2,998,861	-		GFF2926	0.21	+0.4
2,998,862	+		GFF2926	0.21	-0.2
2,998,862	+		GFF2926	0.21	-0.2
2,998,862	+		GFF2926	0.21	+0.3
2,998,862	+		GFF2926	0.21	+0.7
2,998,867	+		GFF2926	0.21	-1.1
2,998,875	-		GFF2926	0.22	+0.3
2,998,903	+		GFF2926	0.23	-1.4