Strain Fitness in Sphingobium sp. HT1-2 around GFF2904

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,964,621	+		GFF2903	0.44	-0.1
2,964,621	+		GFF2903	0.44	+0.7
2,964,622	+		GFF2903	0.44	-0.8
2,964,623	+		GFF2903	0.44	-0.3
2,964,628	+		GFF2903	0.44	-0.1
2,964,628	+		GFF2903	0.44	-0.6
2,964,629	-		GFF2903	0.44	-1.1
2,964,715	-		GFF2903	0.50	-0.2
2,964,720	-		GFF2903	0.50	-1.5
2,964,732	+		GFF2903	0.51	+0.7
2,964,750	-		GFF2903	0.52	+0.7
2,964,769	+		GFF2903	0.53	-0.3
2,964,777	-		GFF2903	0.54	-0.8
2,964,777	-		GFF2903	0.54	+1.6
2,964,782	-		GFF2903	0.54	-1.3
2,964,799	-		GFF2903	0.55	-0.0
2,964,858	+		GFF2903	0.59	+1.7
2,964,903	+		GFF2903	0.61	+0.8
2,964,903	+		GFF2903	0.61	-0.7
2,964,903	+		GFF2903	0.61	-0.0
2,964,903	+		GFF2903	0.61	+0.4
2,964,903	+		GFF2903	0.61	+1.0
2,964,903	+		GFF2903	0.61	-0.1
2,964,903	+		GFF2903	0.61	+2.0
2,964,903	+		GFF2903	0.61	-0.5
2,964,911	-		GFF2903	0.62	-1.2
2,964,911	-		GFF2903	0.62	-0.2
2,964,911	-		GFF2903	0.62	+1.4
2,964,911	-		GFF2903	0.62	+1.0
2,964,918	+		GFF2903	0.62	-0.1
2,964,920	-		GFF2903	0.62	+0.7
2,964,926	-		GFF2903	0.63	+0.7
2,964,928	+		GFF2903	0.63	-0.0
2,964,928	+		GFF2903	0.63	+0.5
2,964,936	-		GFF2903	0.63	+0.7
2,964,936	-		GFF2903	0.63	+0.0
2,964,948	+		GFF2903	0.64	+0.0
2,964,949	-		GFF2903	0.64	-0.2
2,965,052	+		GFF2903	0.70	+0.3
2,965,055	-		GFF2903	0.71	+0.2
2,965,060	-		GFF2903	0.71	-1.6
2,965,095	-		GFF2903	0.73	+0.2
2,965,101	+		GFF2903	0.73	+0.1
2,965,109	-		GFF2903	0.74	-0.9
2,965,109	-		GFF2903	0.74	-0.6
2,965,130	+		GFF2903	0.75	-0.4
2,965,130	+		GFF2903	0.75	-0.6
2,965,138	-		GFF2903	0.76	+0.4
2,965,156	-		GFF2903	0.77	+1.6
2,965,223	+		GFF2903	0.81	-0.1
2,965,232	+		GFF2903	0.81	+0.1
2,965,237	+		GFF2903	0.82	-0.6
2,965,237	+		GFF2903	0.82	-0.4
2,965,237	+		GFF2903	0.82	-0.4
2,965,237	+		GFF2903	0.82	+0.4
2,965,237	+		GFF2903	0.82	-0.4
2,965,237	+		GFF2903	0.82	-1.2
2,965,237	+		GFF2903	0.82	-1.5
2,965,237	+		GFF2903	0.82	+0.5
2,965,243	+		GFF2903	0.82	+0.0
2,965,243	+		GFF2903	0.82	-0.0
2,965,245	-		GFF2903	0.82	-2.0
2,965,245	-		GFF2903	0.82	+0.4
2,965,245	-		GFF2903	0.82	-1.0
2,965,251	-		GFF2903	0.83	-2.0
2,965,273	+		GFF2903	0.84	+0.9
2,965,273	+		GFF2903	0.84	-1.0
2,965,273	+		GFF2903	0.84	-0.5
2,965,273	+		GFF2903	0.84	-2.4
2,965,273	+		GFF2903	0.84	+0.1
2,965,273	+		GFF2903	0.84	+1.4
2,965,273	+		GFF2903	0.84	-0.1
2,965,281	-		GFF2903	0.84	-0.6
2,965,281	-		GFF2903	0.84	+0.7
2,965,281	-		GFF2903	0.84	-0.9
2,965,281	-		GFF2903	0.84	-0.6
2,965,281	-		GFF2903	0.84	-1.4
2,965,281	-		GFF2903	0.84	-0.8
2,965,281	-		GFF2903	0.84	-0.0
2,965,287	-		GFF2903	0.85	-0.3
2,965,287	-		GFF2903	0.85	-0.5
2,965,287	-		GFF2903	0.85	-0.2
2,965,287	-		GFF2903	0.85	-0.2
2,965,292	-		GFF2903	0.85	+0.3
2,965,292	-		GFF2903	0.85	-1.1
2,965,357	+		GFF2903	0.89	+0.3
2,965,433	+				+0.4
2,965,433	+				+0.8
2,965,433	+				-0.9
2,965,446	-				+0.9
2,965,511	+				+0.1
2,965,519	-				-0.4
2,965,519	-				+0.5
2,965,519	-				-0.3
2,965,519	-				+0.7
2,965,533	-				-0.3
2,965,599	+				-0.7
2,965,605	+				+1.0
2,965,613	-				-0.4
2,965,630	+				-1.2
2,965,687	-				-0.5
2,965,709	+				-0.6
2,965,709	+				+0.3
2,965,709	+				-1.4
2,965,712	+				-0.3
2,965,717	+				-1.7
2,965,722	-				+0.3
2,965,742	+				+0.2
2,965,776	-		GFF2904	0.12	+0.6
2,965,798	-		GFF2904	0.14	-1.3
2,965,799	+		GFF2904	0.14	-0.3
2,965,817	-		GFF2904	0.15	+1.2
2,965,817	-		GFF2904	0.15	+1.7
2,965,822	-		GFF2904	0.15	-0.2
2,965,826	-		GFF2904	0.16	-0.0
2,965,904	+		GFF2904	0.22	+0.1
2,965,913	+		GFF2904	0.22	+0.1
2,965,923	+		GFF2904	0.23	-1.5
2,965,931	-		GFF2904	0.24	+1.8
2,965,931	-		GFF2904	0.24	-0.9
2,965,939	+		GFF2904	0.24	-0.6
2,965,941	+		GFF2904	0.25	+0.6
2,965,947	+		GFF2904	0.25	-1.1
2,966,019	+		GFF2904	0.31	-0.3
2,966,027	-		GFF2904	0.31	+0.8
2,966,041	+		GFF2904	0.32	+1.1
2,966,041	+		GFF2904	0.32	+0.2
2,966,049	-		GFF2904	0.33	+0.9
2,966,049	-		GFF2904	0.33	+1.3
2,966,049	-		GFF2904	0.33	+0.8
2,966,081	+		GFF2904	0.35	+0.1
2,966,081	+		GFF2904	0.35	+0.5
2,966,089	-		GFF2904	0.36	+0.5
2,966,104	+		GFF2904	0.37	-1.0
2,966,112	-		GFF2904	0.38	+0.2
2,966,142	-		GFF2904	0.40	-0.2
2,966,145	+		GFF2904	0.40	-0.8
2,966,161	+		GFF2904	0.41	-1.1
2,966,169	-		GFF2904	0.42	+0.1
2,966,171	+		GFF2904	0.42	+0.1
2,966,188	+		GFF2904	0.44	+0.9
2,966,188	+		GFF2904	0.44	-1.8
2,966,271	+		GFF2904	0.50	+0.4
2,966,278	+		GFF2904	0.50	+0.2
2,966,286	+		GFF2904	0.51	-1.0
2,966,288	+		GFF2904	0.51	-1.3
2,966,296	-		GFF2904	0.52	-0.9
2,966,302	+		GFF2904	0.52	-0.6
2,966,323	+		GFF2904	0.54	+1.2
2,966,323	+		GFF2904	0.54	+0.3
2,966,323	+		GFF2904	0.54	+0.9
2,966,323	+		GFF2904	0.54	+0.8
2,966,323	+		GFF2904	0.54	-0.1
2,966,323	+		GFF2904	0.54	+0.5
2,966,323	+		GFF2904	0.54	+2.2
2,966,323	+		GFF2904	0.54	-2.4
2,966,323	+		GFF2904	0.54	+0.4
2,966,331	-		GFF2904	0.54	-0.9
2,966,333	+		GFF2904	0.55	-0.9
2,966,335	-		GFF2904	0.55	+0.8
2,966,335	-		GFF2904	0.55	-0.1
2,966,340	+		GFF2904	0.55	+0.3
2,966,341	-		GFF2904	0.55	-1.0
2,966,346	-		GFF2904	0.56	-0.7
2,966,353	+		GFF2904	0.56	-0.3
2,966,381	-		GFF2904	0.58	-1.6
2,966,438	+		GFF2904	0.63	-0.1
2,966,443	+		GFF2904	0.63	-0.6
2,966,470	+		GFF2904	0.65	-1.8
2,966,515	+		GFF2904	0.69	+0.2
2,966,542	-		GFF2904	0.71	-0.7
2,966,578	+		GFF2904	0.73	-0.8
2,966,615	+		GFF2904	0.76	+0.2
2,966,621	+		GFF2904	0.77	+0.2
2,966,671	+		GFF2904	0.81	+0.0
2,966,679	-		GFF2904	0.81	+1.0
2,966,691	+		GFF2904	0.82	+0.6
2,966,695	+		GFF2904	0.82	-0.3
2,966,695	+		GFF2904	0.82	-1.4
2,966,703	-		GFF2904	0.83	-0.0
2,966,703	-		GFF2904	0.83	+0.4
2,966,703	-		GFF2904	0.83	+0.6
2,966,709	+		GFF2904	0.83	+1.2
2,966,709	+		GFF2904	0.83	-0.3
2,966,709	-		GFF2904	0.83	+0.1
2,966,722	-		GFF2904	0.84	+1.1
2,966,746	-		GFF2904	0.86	-1.6
2,966,751	-		GFF2904	0.87	+0.8
2,966,758	+		GFF2904	0.87	+0.0
2,966,771	+		GFF2904	0.88	+0.8
2,966,779	-		GFF2904	0.89	-0.7
2,966,805	-				+1.0
2,966,835	+				-0.4
2,966,869	+				-0.5
2,966,869	+				-0.0
2,966,877	-				-0.9
2,966,892	-				-2.1
2,966,892	-				-0.5
2,966,892	-				+0.2
2,966,894	+				-1.0
2,966,902	+				-0.1
2,966,920	+				+0.1
2,966,950	+				-1.8
2,966,950	+				-1.0
2,966,960	+				-0.2
2,966,965	+				+0.1
2,966,983	+				-1.9
2,966,991	-				-1.3
2,966,999	-				-0.2
2,967,007	-				-0.5
2,967,009	+				-0.5
2,967,009	+				+0.1
2,967,025	-		GFF2905	0.11	+0.6
2,967,038	+		GFF2905	0.13	+0.1
2,967,046	-		GFF2905	0.14	-1.3
2,967,090	+		GFF2905	0.18	-0.4
2,967,090	+		GFF2905	0.18	+0.5
2,967,098	-		GFF2905	0.19	-1.7
2,967,136	-		GFF2905	0.23	+0.1
2,967,136	-		GFF2905	0.23	-0.4
2,967,138	+		GFF2905	0.24	+0.0
2,967,140	-		GFF2905	0.24	-1.7
2,967,143	+		GFF2905	0.24	-1.8
2,967,146	-		GFF2905	0.25	-0.6
2,967,146	-		GFF2905	0.25	-0.3
2,967,151	-		GFF2905	0.25	-0.1
2,967,163	+		GFF2905	0.26	+1.2
2,967,171	-		GFF2905	0.27	-0.7
2,967,171	-		GFF2905	0.27	+1.2
2,967,171	-		GFF2905	0.27	+0.8
2,967,177	+		GFF2905	0.28	-0.7
2,967,177	-		GFF2905	0.28	+0.5
2,967,179	-		GFF2905	0.28	-0.8
2,967,201	-		GFF2905	0.31	-1.1
2,967,232	+		GFF2905	0.34	-0.4
2,967,235	-		GFF2905	0.34	+0.2
2,967,252	+		GFF2905	0.36	-1.8
2,967,252	+		GFF2905	0.36	-0.3
2,967,260	-		GFF2905	0.37	+1.0
2,967,272	+		GFF2905	0.38	-0.4
2,967,272	+		GFF2905	0.38	+1.0
2,967,287	+		GFF2905	0.40	-0.4
2,967,297	+		GFF2905	0.41	+0.2
2,967,376	+		GFF2905	0.50	+0.3
2,967,419	+		GFF2905	0.54	-1.3
2,967,433	+		GFF2905	0.56	-1.7
2,967,433	+		GFF2905	0.56	-0.9
2,967,433	+		GFF2905	0.56	+0.4
2,967,433	+		GFF2905	0.56	-1.0
2,967,440	+		GFF2905	0.57	+0.7
2,967,441	-		GFF2905	0.57	-0.4
2,967,441	-		GFF2905	0.57	+1.4
2,967,453	-		GFF2905	0.58	+0.4
2,967,469	-		GFF2905	0.60	-0.0
2,967,471	+		GFF2905	0.60	+1.1
2,967,479	-		GFF2905	0.61	+0.7
2,967,495	+		GFF2905	0.63	-0.4
2,967,501	+		GFF2905	0.63	-0.6
2,967,501	+		GFF2905	0.63	+0.3
2,967,501	+		GFF2905	0.63	-0.3
2,967,502	+		GFF2905	0.63	-1.2
2,967,508	+		GFF2905	0.64	-1.3
2,967,508	+		GFF2905	0.64	+0.2
2,967,509	-		GFF2905	0.64	+0.1
2,967,509	-		GFF2905	0.64	-0.9
2,967,510	-		GFF2905	0.64	-2.4
2,967,510	-		GFF2905	0.64	-0.8
2,967,516	-		GFF2905	0.65	-1.0
2,967,522	+		GFF2905	0.65	-1.0
2,967,522	+		GFF2905	0.65	+0.2
2,967,530	-		GFF2905	0.66	-0.6
2,967,549	-		GFF2905	0.68	-2.1
2,967,561	+		GFF2905	0.70	-0.4
2,967,630	+		GFF2905	0.77	+0.1
2,967,630	+		GFF2905	0.77	+0.4
2,967,630	+		GFF2905	0.77	-0.4
2,967,630	+		GFF2905	0.77	-0.3
2,967,630	+		GFF2905	0.77	-1.3
2,967,656	+		GFF2905	0.80	+0.2
2,967,661	+		GFF2905	0.81	+0.3
2,967,661	+		GFF2905	0.81	-1.2
2,967,661	+		GFF2905	0.81	-2.0
2,967,662	+		GFF2905	0.81	-0.6
2,967,662	+		GFF2905	0.81	+2.0
2,967,663	+		GFF2905	0.81	+0.4
2,967,669	-		GFF2905	0.81	-0.8
2,967,669	-		GFF2905	0.81	-0.3
2,967,745	+		GFF2905	0.90	-0.1
2,967,752	+				-0.2
2,967,752	-				+0.8
2,967,773	+				+0.9
2,967,857	-				-0.6
2,967,857	-				-0.8
2,967,862	-				+0.5