Strain Fitness in Sphingobium sp. HT1-2 around GFF2839

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,888,286	-		GFF2838	0.41	-0.5
2,888,318	-		GFF2838	0.43	+1.5
2,888,318	-		GFF2838	0.43	+1.6
2,888,350	-		GFF2838	0.45	-0.4
2,888,385	+		GFF2838	0.47	-0.5
2,888,385	+		GFF2838	0.47	-0.4
2,888,389	-		GFF2838	0.47	-0.8
2,888,407	+		GFF2838	0.48	-0.4
2,888,415	-		GFF2838	0.48	-0.8
2,888,427	+		GFF2838	0.49	-0.8
2,888,427	+		GFF2838	0.49	+0.2
2,888,430	-		GFF2838	0.49	+0.0
2,888,432	+		GFF2838	0.49	+0.8
2,888,436	-		GFF2838	0.50	-0.8
2,888,477	-		GFF2838	0.52	-0.9
2,888,481	+		GFF2838	0.52	+0.6
2,888,489	-		GFF2838	0.53	-1.8
2,888,531	+		GFF2838	0.55	+0.8
2,888,541	+		GFF2838	0.56	-0.1
2,888,541	+		GFF2838	0.56	-0.9
2,888,545	-		GFF2838	0.56	-0.4
2,888,545	-		GFF2838	0.56	-0.6
2,888,545	-		GFF2838	0.56	-0.9
2,888,549	-		GFF2838	0.57	-1.4
2,888,549	-		GFF2838	0.57	-0.4
2,888,558	-		GFF2838	0.57	-0.5
2,888,559	-		GFF2838	0.57	-1.8
2,888,562	+		GFF2838	0.57	+0.3
2,888,562	+		GFF2838	0.57	-1.5
2,888,570	-		GFF2838	0.58	+0.2
2,888,570	-		GFF2838	0.58	-1.3
2,888,575	-		GFF2838	0.58	+0.5
2,888,577	+		GFF2838	0.58	-0.7
2,888,577	+		GFF2838	0.58	-1.1
2,888,577	+		GFF2838	0.58	+1.2
2,888,578	+		GFF2838	0.58	+0.9
2,888,578	+		GFF2838	0.58	+0.4
2,888,584	+		GFF2838	0.59	-0.8
2,888,584	-		GFF2838	0.59	-0.5
2,888,585	-		GFF2838	0.59	+0.1
2,888,585	-		GFF2838	0.59	-0.0
2,888,585	-		GFF2838	0.59	-0.4
2,888,586	-		GFF2838	0.59	+0.3
2,888,592	-		GFF2838	0.59	-0.0
2,888,618	+		GFF2838	0.61	-0.4
2,888,629	+		GFF2838	0.61	+0.5
2,888,629	+		GFF2838	0.61	+0.2
2,888,639	+		GFF2838	0.62	+0.3
2,888,674	+		GFF2838	0.64	+0.2
2,888,687	+		GFF2838	0.65	+0.1
2,888,688	-		GFF2838	0.65	-0.7
2,888,695	-		GFF2838	0.65	-0.1
2,888,721	+		GFF2838	0.67	-0.7
2,888,721	+		GFF2838	0.67	-0.7
2,888,725	+		GFF2838	0.67	-0.7
2,888,733	-		GFF2838	0.68	-0.3
2,888,741	-		GFF2838	0.68	+0.2
2,888,767	-		GFF2838	0.70	+0.0
2,888,777	-		GFF2838	0.70	-0.3
2,888,782	+		GFF2838	0.71	+1.0
2,888,783	+		GFF2838	0.71	+1.8
2,888,800	+		GFF2838	0.72	-0.9
2,888,800	+		GFF2838	0.72	-0.6
2,888,800	+		GFF2838	0.72	+0.0
2,888,800	-		GFF2838	0.72	-0.2
2,888,800	-		GFF2838	0.72	+0.4
2,888,800	-		GFF2838	0.72	+0.5
2,888,808	-		GFF2838	0.72	-0.7
2,888,808	-		GFF2838	0.72	+0.5
2,888,808	-		GFF2838	0.72	+1.2
2,888,824	-		GFF2838	0.73	-0.8
2,888,850	+		GFF2838	0.75	+0.5
2,888,850	+		GFF2838	0.75	+1.7
2,888,850	+		GFF2838	0.75	-0.8
2,888,858	-		GFF2838	0.75	-0.3
2,888,858	-		GFF2838	0.75	-0.9
2,888,858	-		GFF2838	0.75	-0.3
2,888,858	-		GFF2838	0.75	+0.3
2,888,858	-		GFF2838	0.75	-2.4
2,888,859	+		GFF2838	0.75	-0.4
2,888,864	+		GFF2838	0.76	-0.2
2,888,864	+		GFF2838	0.76	-0.4
2,888,872	-		GFF2838	0.76	-0.9
2,888,875	+		GFF2838	0.76	+0.4
2,888,884	+		GFF2838	0.77	-0.2
2,888,888	-		GFF2838	0.77	-2.0
2,888,892	-		GFF2838	0.77	+1.0
2,888,918	+		GFF2838	0.79	+0.6
2,888,926	-		GFF2838	0.79	-0.6
2,888,933	+		GFF2838	0.80	-0.5
2,888,934	+		GFF2838	0.80	+0.8
2,888,934	+		GFF2838	0.80	-0.5
2,888,934	+		GFF2838	0.80	-1.2
2,888,935	-		GFF2838	0.80	-0.5
2,888,941	-		GFF2838	0.80	+0.1
2,888,952	+		GFF2838	0.81	-1.2
2,888,961	+		GFF2838	0.81	+0.3
2,888,969	+		GFF2838	0.82	+0.5
2,888,984	-		GFF2838	0.83	-0.4
2,889,026	+		GFF2838	0.85	-1.8
2,889,026	+		GFF2838	0.85	-1.2
2,889,026	+		GFF2838	0.85	-1.0
2,889,026	+		GFF2838	0.85	+0.2
2,889,026	+		GFF2838	0.85	-0.2
2,889,026	+		GFF2838	0.85	-1.2
2,889,026	+		GFF2838	0.85	-0.1
2,889,026	+		GFF2838	0.85	+0.9
2,889,026	+		GFF2838	0.85	+0.9
2,889,026	+		GFF2838	0.85	-1.6
2,889,026	+		GFF2838	0.85	+0.4
2,889,026	+		GFF2838	0.85	-1.1
2,889,026	+		GFF2838	0.85	+0.1
2,889,026	+		GFF2838	0.85	-1.4
2,889,026	+		GFF2838	0.85	+0.1
2,889,026	+		GFF2838	0.85	-0.0
2,889,026	+		GFF2838	0.85	+0.0
2,889,027	+		GFF2838	0.85	+0.4
2,889,034	-		GFF2838	0.86	-1.0
2,889,034	-		GFF2838	0.86	+0.1
2,889,034	-		GFF2838	0.86	+0.6
2,889,034	-		GFF2838	0.86	+1.1
2,889,034	-		GFF2838	0.86	-0.6
2,889,034	-		GFF2838	0.86	-1.9
2,889,034	-		GFF2838	0.86	-1.6
2,889,034	-		GFF2838	0.86	+1.0
2,889,034	-		GFF2838	0.86	-1.1
2,889,034	-		GFF2838	0.86	-0.0
2,889,034	-		GFF2838	0.86	+1.1
2,889,048	+		GFF2838	0.87	+0.6
2,889,048	+		GFF2838	0.87	-2.2
2,889,048	+		GFF2838	0.87	+0.6
2,889,061	-		GFF2838	0.88	-2.7
2,889,061	-		GFF2838	0.88	+0.0
2,889,071	+		GFF2838	0.88	+0.4
2,889,100	-		GFF2838	0.90	+0.1
2,889,118	+				-0.2
2,889,136	+				+0.6
2,889,144	-				+0.8
2,889,152	-				+1.4
2,889,183	+				+0.3
2,889,195	+				+1.1
2,889,208	+				-0.8
2,889,216	-				-0.2
2,889,216	-				-1.2
2,889,244	+				+0.1
2,889,244	-				-1.1
2,889,261	-				+1.0
2,889,261	-				-0.6
2,889,271	-				+0.4
2,889,271	-				-0.5
2,889,271	-				-0.3
2,889,314	+				-0.3
2,889,315	+				-0.4
2,889,315	+				-0.9
2,889,322	-				+0.5
2,889,375	+				-0.8
2,889,378	-				-1.2
2,889,394	+				-0.2
2,889,394	-				+0.4
2,889,399	+		GFF2839	0.10	-1.1
2,889,399	+		GFF2839	0.10	-1.4
2,889,402	-		GFF2839	0.11	-1.5
2,889,402	-		GFF2839	0.11	-0.1
2,889,407	-		GFF2839	0.11	-0.3
2,889,409	+		GFF2839	0.11	-0.5
2,889,409	+		GFF2839	0.11	+0.1
2,889,417	-		GFF2839	0.12	+0.9
2,889,417	-		GFF2839	0.12	+0.6
2,889,417	-		GFF2839	0.12	+0.7
2,889,428	+		GFF2839	0.13	+0.4
2,889,447	-		GFF2839	0.15	+0.8
2,889,449	+		GFF2839	0.15	-0.4
2,889,449	+		GFF2839	0.15	-0.0
2,889,451	+		GFF2839	0.15	-2.3
2,889,457	-		GFF2839	0.16	+0.1
2,889,471	+		GFF2839	0.17	-0.4
2,889,471	+		GFF2839	0.17	-0.7
2,889,488	+		GFF2839	0.18	+0.1
2,889,488	+		GFF2839	0.18	+1.1
2,889,488	+		GFF2839	0.18	-0.3
2,889,488	+		GFF2839	0.18	+0.2
2,889,488	+		GFF2839	0.18	-0.0
2,889,488	+		GFF2839	0.18	-0.8
2,889,488	+		GFF2839	0.18	-0.3
2,889,488	+		GFF2839	0.18	-0.9
2,889,488	+		GFF2839	0.18	+0.4
2,889,488	+		GFF2839	0.18	-2.2
2,889,488	+		GFF2839	0.18	+0.2
2,889,488	+		GFF2839	0.18	+0.4
2,889,496	-		GFF2839	0.19	-0.4
2,889,496	-		GFF2839	0.19	-2.2
2,889,496	-		GFF2839	0.19	-0.9
2,889,540	-		GFF2839	0.23	-0.5
2,889,572	-		GFF2839	0.26	+0.3
2,889,596	-		GFF2839	0.28	+0.4
2,889,598	+		GFF2839	0.28	-0.6
2,889,603	+		GFF2839	0.28	-1.5
2,889,606	-		GFF2839	0.29	-0.4
2,889,606	-		GFF2839	0.29	+0.6
2,889,606	-		GFF2839	0.29	-0.8
2,889,611	-		GFF2839	0.29	-0.7
2,889,611	-		GFF2839	0.29	-0.4
2,889,614	+		GFF2839	0.29	-1.4
2,889,616	-		GFF2839	0.30	-2.2
2,889,625	+		GFF2839	0.30	+0.8
2,889,633	-		GFF2839	0.31	-0.1
2,889,633	-		GFF2839	0.31	-0.5
2,889,655	+		GFF2839	0.33	-1.7
2,889,670	-		GFF2839	0.34	-1.0
2,889,672	+		GFF2839	0.35	+0.4
2,889,677	+		GFF2839	0.35	-1.0
2,889,681	-		GFF2839	0.35	+1.1
2,889,685	-		GFF2839	0.36	+0.2
2,889,692	+		GFF2839	0.36	+0.2
2,889,692	+		GFF2839	0.36	+0.1
2,889,692	+		GFF2839	0.36	-0.8
2,889,695	+		GFF2839	0.37	-0.6
2,889,700	+		GFF2839	0.37	+0.8
2,889,700	+		GFF2839	0.37	+1.2
2,889,700	-		GFF2839	0.37	+1.0
2,889,700	-		GFF2839	0.37	-1.5
2,889,703	-		GFF2839	0.37	-0.8
2,889,703	-		GFF2839	0.37	+0.3
2,889,705	-		GFF2839	0.38	-1.1
2,889,708	-		GFF2839	0.38	+0.8
2,889,710	-		GFF2839	0.38	+0.3
2,889,713	+		GFF2839	0.38	-0.5
2,889,713	-		GFF2839	0.38	+0.3
2,889,721	-		GFF2839	0.39	+0.2
2,889,727	+		GFF2839	0.39	+0.7
2,889,727	+		GFF2839	0.39	+0.0
2,889,733	+		GFF2839	0.40	-0.8
2,889,735	-		GFF2839	0.40	-0.2
2,889,735	-		GFF2839	0.40	-1.5
2,889,735	-		GFF2839	0.40	+1.1
2,889,735	-		GFF2839	0.40	-1.9
2,889,742	-		GFF2839	0.41	-1.0
2,889,751	-		GFF2839	0.42	-1.5
2,889,766	+		GFF2839	0.43	-1.3
2,889,797	+		GFF2839	0.46	-1.6
2,889,810	+		GFF2839	0.47	-3.0
2,889,810	+		GFF2839	0.47	-0.6
2,889,810	+		GFF2839	0.47	+1.7
2,889,810	+		GFF2839	0.47	-1.2
2,889,818	-		GFF2839	0.48	-0.3
2,889,818	-		GFF2839	0.48	+0.7
2,889,818	-		GFF2839	0.48	+0.4
2,889,818	-		GFF2839	0.48	-0.1
2,889,854	+		GFF2839	0.51	+0.3
2,889,861	-		GFF2839	0.51	-0.5
2,889,870	-		GFF2839	0.52	+0.3
2,889,870	-		GFF2839	0.52	-2.4
2,889,874	-		GFF2839	0.52	-0.2
2,889,874	-		GFF2839	0.52	-0.2
2,889,884	+		GFF2839	0.53	-1.3
2,889,884	+		GFF2839	0.53	-2.0
2,889,884	+		GFF2839	0.53	+0.8
2,889,886	+		GFF2839	0.54	-1.1
2,889,892	-		GFF2839	0.54	+0.8
2,889,892	-		GFF2839	0.54	-0.0
2,889,894	-		GFF2839	0.54	-0.3
2,889,901	+		GFF2839	0.55	-0.5
2,889,904	-		GFF2839	0.55	+0.5
2,889,907	+		GFF2839	0.55	+0.0
2,889,911	-		GFF2839	0.56	+0.0
2,889,920	+		GFF2839	0.57	+0.9
2,889,920	+		GFF2839	0.57	-1.8
2,889,920	+		GFF2839	0.57	+1.1
2,889,931	+		GFF2839	0.58	+0.2
2,889,931	+		GFF2839	0.58	+0.9
2,889,934	-		GFF2839	0.58	+0.0
2,889,945	+		GFF2839	0.59	-1.2
2,889,993	+		GFF2839	0.63	+1.1
2,889,993	+		GFF2839	0.63	-0.7
2,889,993	-		GFF2839	0.63	-0.2
2,889,998	+		GFF2839	0.63	+1.0
2,890,001	-		GFF2839	0.64	-1.5
2,890,001	-		GFF2839	0.64	-1.5
2,890,001	-		GFF2839	0.64	-1.2
2,890,006	-		GFF2839	0.64	+0.2
2,890,006	-		GFF2839	0.64	-1.0
2,890,011	+		GFF2839	0.65	+0.6
2,890,011	-		GFF2839	0.65	+1.0
2,890,021	+		GFF2839	0.66	-0.6
2,890,023	-		GFF2839	0.66	+0.5
2,890,028	-		GFF2839	0.66	-2.8
2,890,028	-		GFF2839	0.66	-1.2
2,890,053	-		GFF2839	0.68	-1.4
2,890,053	-		GFF2839	0.68	-0.5
2,890,095	+		GFF2839	0.72	-0.6
2,890,095	+		GFF2839	0.72	-0.7
2,890,097	-		GFF2839	0.72	+0.5
2,890,102	+		GFF2839	0.73	+0.4
2,890,110	-		GFF2839	0.73	+0.8
2,890,127	-		GFF2839	0.75	+0.7
2,890,168	+		GFF2839	0.79	-0.7
2,890,168	+		GFF2839	0.79	-1.9
2,890,168	+		GFF2839	0.79	-1.5
2,890,176	-		GFF2839	0.79	+0.2
2,890,248	+		GFF2839	0.86	+0.6
2,890,263	+		GFF2839	0.87	+1.6
2,890,263	-		GFF2839	0.87	-0.2
2,890,293	+		GFF2839	0.90	-0.6
2,890,301	-				-0.3
2,890,317	-				-1.6
2,890,318	+				+0.1
2,890,326	-				-2.0
2,890,328	+				+1.2
2,890,341	-				+0.2
2,890,343	+				+0.5
2,890,357	+				-0.2
2,890,357	+				+0.4
2,890,357	+				+0.0
2,890,365	-				-0.3
2,890,365	-				-1.4
2,890,365	-				-2.4
2,890,367	+				-1.1
2,890,367	+				+0.6
2,890,367	+				-0.4
2,890,413	+				-2.4
2,890,413	+				-0.8
2,890,421	-				-2.9
2,890,428	+				-1.2
2,890,446	-				-0.9
2,890,478	-				-0.3
2,890,483	+				+0.3
2,890,491	-				-0.6
2,890,491	-				+0.6
2,890,494	-				+0.6
2,890,499	-				+0.3
2,890,509	-				-1.1
2,890,519	-				+0.2
2,890,519	-				-1.2
2,890,523	+				-0.5
2,890,531	+				-2.8
2,890,533	+				+0.2
2,890,537	+				+0.8
2,890,545	+				-0.8
2,890,550	+				-0.7
2,890,563	+				-1.4
2,890,563	+				-0.7
2,890,571	-				-0.5
2,890,571	-				-0.6
2,890,590	-				-0.1
2,890,592	+				-0.6
2,890,592	+				-2.8
2,890,594	+				-0.2
2,890,597	+				+1.1
2,890,600	-				-1.6
2,890,600	-				-0.2
2,890,600	-				-1.2
2,890,605	-				-0.4
2,890,617	+				-0.0
2,890,617	+				+0.4
2,890,621	-				+0.6
2,890,624	+				+1.1
2,890,625	+				-0.6
2,890,704	-		GFF2840	0.11	-0.2
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