Strain Fitness in Sphingobium sp. HT1-2 around GFF2837

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,885,633	+		GFF2836	0.77	+1.0
2,885,643	-		GFF2836	0.77	-0.6
2,885,658	+		GFF2836	0.78	+0.7
2,885,658	+		GFF2836	0.78	+0.7
2,885,666	-		GFF2836	0.78	+1.1
2,885,666	-		GFF2836	0.78	+0.2
2,885,677	+		GFF2836	0.79	-1.6
2,885,677	+		GFF2836	0.79	-0.7
2,885,677	+		GFF2836	0.79	+1.7
2,885,677	+		GFF2836	0.79	+0.8
2,885,683	+		GFF2836	0.79	-0.1
2,885,685	-		GFF2836	0.79	+0.2
2,885,685	-		GFF2836	0.79	-1.3
2,885,685	-		GFF2836	0.79	-1.5
2,885,685	-		GFF2836	0.79	-0.4
2,885,685	-		GFF2836	0.79	+0.7
2,885,687	+		GFF2836	0.79	-0.1
2,885,687	+		GFF2836	0.79	-0.7
2,885,688	+		GFF2836	0.79	-0.5
2,885,690	-		GFF2836	0.79	-0.8
2,885,690	-		GFF2836	0.79	-1.0
2,885,730	-		GFF2836	0.81	-1.2
2,885,765	+		GFF2836	0.82	+2.2
2,885,765	+		GFF2836	0.82	-0.3
2,885,765	+		GFF2836	0.82	-2.0
2,885,765	+		GFF2836	0.82	-1.0
2,885,766	-		GFF2836	0.82	-2.4
2,885,767	-		GFF2836	0.82	-0.7
2,885,773	-		GFF2836	0.82	+0.1
2,885,801	-		GFF2836	0.83	-1.2
2,885,812	+		GFF2836	0.83	+0.8
2,885,814	+		GFF2836	0.84	-1.9
2,885,814	+		GFF2836	0.84	-0.6
2,885,814	+		GFF2836	0.84	+0.4
2,885,814	+		GFF2836	0.84	+0.1
2,885,814	+		GFF2836	0.84	+0.6
2,885,814	+		GFF2836	0.84	+0.5
2,885,814	+		GFF2836	0.84	-0.9
2,885,820	-		GFF2836	0.84	-0.3
2,885,822	-		GFF2836	0.84	-1.3
2,885,822	-		GFF2836	0.84	-0.3
2,885,822	-		GFF2836	0.84	-1.3
2,885,822	-		GFF2836	0.84	-0.3
2,885,822	-		GFF2836	0.84	-1.1
2,885,822	-		GFF2836	0.84	+0.0
2,885,822	-		GFF2836	0.84	+0.2
2,885,829	-		GFF2836	0.84	+1.4
2,885,850	+		GFF2836	0.85	-0.3
2,885,863	-		GFF2836	0.85	-1.1
2,885,884	+		GFF2836	0.86	-0.5
2,885,886	+		GFF2836	0.86	-0.2
2,885,892	-		GFF2836	0.86	-2.7
2,885,894	+		GFF2836	0.86	+1.2
2,885,894	+		GFF2836	0.86	-0.5
2,885,909	+		GFF2836	0.87	-2.5
2,885,915	-		GFF2836	0.87	+0.2
2,885,915	-		GFF2836	0.87	+0.1
2,885,917	+		GFF2836	0.87	-0.3
2,885,925	-		GFF2836	0.88	+0.2
2,885,933	-		GFF2836	0.88	+0.3
2,885,933	-		GFF2836	0.88	+0.8
2,885,933	-		GFF2836	0.88	+0.5
2,885,938	-		GFF2836	0.88	+0.3
2,885,959	-		GFF2836	0.89	-0.8
2,885,964	+		GFF2836	0.89	-1.0
2,885,965	-		GFF2836	0.89	+0.6
2,885,972	-		GFF2836	0.89	+0.7
2,885,981	-		GFF2836	0.90	-1.6
2,885,983	-		GFF2836	0.90	+0.4
2,886,079	-				-0.4
2,886,097	-				+0.1
2,886,181	+				-2.0
2,886,186	+				-0.4
2,886,194	-				-0.2
2,886,199	-				-0.0
2,886,226	+				-1.3
2,886,226	+				-0.2
2,886,239	-				-0.4
2,886,239	-				-0.8
2,886,239	-				-0.6
2,886,251	-				-0.8
2,886,256	-				+0.2
2,886,256	-				-0.1
2,886,261	-				-1.2
2,886,274	+				+0.0
2,886,282	-				-1.2
2,886,282	-				+0.4
2,886,285	+				+0.2
2,886,285	+				-1.7
2,886,293	-				+0.7
2,886,295	+				+0.4
2,886,295	+				-0.3
2,886,320	+				-0.4
2,886,320	+				+0.3
2,886,328	-				-0.6
2,886,328	-				-1.4
2,886,330	+				+0.6
2,886,330	+				-0.7
2,886,330	+				+0.1
2,886,330	+				-1.0
2,886,338	-				-2.4
2,886,338	-				-0.6
2,886,338	-				-0.3
2,886,345	+				-0.1
2,886,346	+				+0.8
2,886,353	-				+0.4
2,886,354	+				-1.5
2,886,354	+				-2.3
2,886,354	-				-0.3
2,886,372	-				-2.2
2,886,382	-				+0.1
2,886,389	+				-1.2
2,886,389	+				-2.8
2,886,411	-				-2.3
2,886,430	-				-2.1
2,886,434	+				+1.0
2,886,436	+				+0.6
2,886,436	+				-0.8
2,886,436	+				-0.7
2,886,444	+				-0.8
2,886,444	-				+0.6
2,886,455	-				-2.3
2,886,460	-				-1.4
2,886,507	-				+0.5
2,886,507	-				-1.8
2,886,525	+				-0.8
2,886,538	+				+0.6
2,886,540	+				-0.9
2,886,547	+				+0.1
2,886,547	+				-0.9
2,886,547	+				-0.2
2,886,547	+				+0.2
2,886,553	+				+0.2
2,886,555	-				-0.3
2,886,563	+				+1.0
2,886,564	+				-0.9
2,886,564	+				+0.0
2,886,564	+				-1.8
2,886,588	-				+0.3
2,886,624	-				-2.0
2,886,626	+				+0.2
2,886,626	+				-0.2
2,886,634	-				+0.5
2,886,676	-				+0.4
2,886,690	+				+0.6
2,886,698	+				-0.2
2,886,711	-		GFF2837	0.11	-0.1
2,886,742	+		GFF2837	0.15	-0.9
2,886,742	+		GFF2837	0.15	-1.5
2,886,747	+		GFF2837	0.16	-1.2
2,886,755	-		GFF2837	0.17	-0.8
2,886,800	+		GFF2837	0.23	+1.7
2,886,800	+		GFF2837	0.23	-0.1
2,886,808	+		GFF2837	0.24	-1.5
2,886,808	-		GFF2837	0.24	+0.5
2,886,865	+		GFF2837	0.32	+0.9
2,886,881	-		GFF2837	0.34	-0.2
2,886,901	+		GFF2837	0.36	+0.9
2,886,934	+		GFF2837	0.41	-2.2
2,886,939	+		GFF2837	0.41	+0.7
2,886,947	-		GFF2837	0.43	-0.8
2,886,979	+		GFF2837	0.47	-0.1
2,886,987	-		GFF2837	0.48	-0.4
2,887,002	+		GFF2837	0.50	+1.2
2,887,005	+		GFF2837	0.50	-0.2
2,887,013	+		GFF2837	0.51	+0.8
2,887,038	+		GFF2837	0.55	+0.1
2,887,038	+		GFF2837	0.55	+0.3
2,887,038	+		GFF2837	0.55	-0.7
2,887,046	-		GFF2837	0.56	-0.6
2,887,046	-		GFF2837	0.56	+0.9
2,887,046	-		GFF2837	0.56	+0.5
2,887,046	-		GFF2837	0.56	-1.0
2,887,046	-		GFF2837	0.56	+0.9
2,887,052	+		GFF2837	0.57	+0.2
2,887,055	-		GFF2837	0.57	-0.3
2,887,057	-		GFF2837	0.57	-1.3
2,887,090	+		GFF2837	0.62	-1.8
2,887,101	+		GFF2837	0.63	-0.8
2,887,108	+		GFF2837	0.64	+0.2
2,887,109	-		GFF2837	0.64	-0.1
2,887,138	-		GFF2837	0.68	-0.5
2,887,164	+		GFF2837	0.71	+1.2
2,887,172	+		GFF2837	0.73	-1.5
2,887,172	-		GFF2837	0.73	+0.1
2,887,174	+		GFF2837	0.73	-0.7
2,887,182	-		GFF2837	0.74	+0.4
2,887,182	-		GFF2837	0.74	+0.0
2,887,196	+		GFF2837	0.76	-0.0
2,887,198	+		GFF2837	0.76	+0.9
2,887,204	-		GFF2837	0.77	+0.5
2,887,206	-		GFF2837	0.77	+0.5
2,887,224	+		GFF2837	0.79	+1.1
2,887,271	-		GFF2837	0.86	-0.4
2,887,286	+		GFF2837	0.88	-0.2
2,887,291	+		GFF2837	0.88	-0.6
2,887,294	-		GFF2837	0.89	+1.8
2,887,295	+		GFF2837	0.89	-1.4
2,887,330	-				+0.8
2,887,331	-				-0.1
2,887,348	-				+0.5
2,887,376	-				-0.3
2,887,379	+				-1.6
2,887,379	+				-0.8
2,887,382	-				+0.7
2,887,387	-				-0.8
2,887,387	-				-0.4
2,887,394	-				+0.2
2,887,424	+				-0.2
2,887,426	+				-0.3
2,887,426	+				-1.7
2,887,430	-				+0.6
2,887,438	+				-1.8
2,887,446	-				+0.5
2,887,451	-				-1.0
2,887,475	-				+0.1
2,887,492	+				+0.2
2,887,500	-				+1.8
2,887,503	+				+0.3
2,887,507	+				-0.5
2,887,511	-				-2.4
2,887,548	-				+0.0
2,887,550	+				+0.6
2,887,555	-				-1.1
2,887,558	-				+0.9
2,887,558	-				-1.8
2,887,558	-				-2.0
2,887,558	-				-0.8
2,887,560	-				+0.4
2,887,565	-				-1.2
2,887,568	-				-0.2
2,887,580	+				+0.2
2,887,580	+				-0.5
2,887,580	+				+0.6
2,887,580	+				+0.3
2,887,581	+				+0.4
2,887,588	-				-0.9
2,887,588	-				-0.1
2,887,588	-				+1.0
2,887,589	-				-0.4
2,887,591	+				-1.8
2,887,624	-				+0.4
2,887,630	-				-0.6
2,887,658	+				+0.1
2,887,683	-				-0.1
2,887,683	-				+0.7
2,887,693	-				+0.8
2,887,693	-				-0.1
2,887,698	+				+0.9
2,887,698	+				-1.0
2,887,698	+				-0.5
2,887,698	+				-0.1
2,887,698	+				+0.2
2,887,699	+				-0.5
2,887,704	+				-1.7
2,887,704	+				-0.5
2,887,706	-				-1.0
2,887,706	-				-0.4
2,887,706	-				+0.4
2,887,706	-				+0.8
2,887,706	-				-0.4
2,887,706	-				-0.9
2,887,706	-				+1.5
2,887,706	-				-1.6
2,887,709	+				+1.2
2,887,712	-				+0.7
2,887,716	-				-0.8
2,887,717	-				+1.2
2,887,717	-				-0.2
2,887,717	-				+0.3
2,887,722	-				-1.1
2,887,723	-				+0.3
2,887,753	+				+0.2
2,887,794	-		GFF2838	0.11	-1.4
2,887,814	-		GFF2838	0.12	-0.3
2,887,814	-		GFF2838	0.12	+0.8
2,887,815	+		GFF2838	0.12	-2.2
2,887,822	+		GFF2838	0.13	+0.8
2,887,823	-		GFF2838	0.13	-0.8
2,887,830	-		GFF2838	0.13	+0.3
2,887,831	+		GFF2838	0.13	+0.1
2,887,833	-		GFF2838	0.13	+1.1
2,887,833	-		GFF2838	0.13	-0.1
2,887,835	+		GFF2838	0.13	-0.5
2,887,836	+		GFF2838	0.13	+0.0
2,887,836	+		GFF2838	0.13	-1.0
2,887,844	-		GFF2838	0.14	-0.9
2,887,846	+		GFF2838	0.14	+0.7
2,887,864	-		GFF2838	0.15	-0.4
2,887,888	+		GFF2838	0.17	-0.0
2,887,888	+		GFF2838	0.17	-0.0
2,887,888	+		GFF2838	0.17	-0.7
2,887,917	+		GFF2838	0.18	-0.1
2,887,917	+		GFF2838	0.18	-2.2
2,887,934	+		GFF2838	0.19	-1.3
2,887,934	+		GFF2838	0.19	-0.8
2,887,934	+		GFF2838	0.19	+0.4
2,887,934	+		GFF2838	0.19	+0.2
2,887,942	-		GFF2838	0.20	-2.0
2,887,946	-		GFF2838	0.20	-1.3
2,887,948	+		GFF2838	0.20	-1.4
2,887,956	+		GFF2838	0.21	+0.1
2,887,956	-		GFF2838	0.21	-0.0
2,887,981	+		GFF2838	0.22	-0.9
2,888,004	+		GFF2838	0.24	+0.4
2,888,014	+		GFF2838	0.24	+0.6
2,888,014	+		GFF2838	0.24	+0.2
2,888,022	-		GFF2838	0.25	-0.4
2,888,022	-		GFF2838	0.25	-1.8
2,888,022	-		GFF2838	0.25	-0.5
2,888,022	-		GFF2838	0.25	-0.8
2,888,031	-		GFF2838	0.25	-0.7
2,888,033	+		GFF2838	0.25	-1.0
2,888,053	+		GFF2838	0.27	-1.0
2,888,061	-		GFF2838	0.27	-0.4
2,888,123	-		GFF2838	0.31	-0.6
2,888,125	+		GFF2838	0.31	+0.8
2,888,135	+		GFF2838	0.32	-0.4
2,888,205	-		GFF2838	0.36	-0.5
2,888,211	+		GFF2838	0.36	-0.1
2,888,211	+		GFF2838	0.36	+0.4
2,888,234	+		GFF2838	0.38	-2.4
2,888,249	-		GFF2838	0.38	+0.5
2,888,257	-		GFF2838	0.39	+0.1
2,888,259	+		GFF2838	0.39	+0.2
2,888,259	+		GFF2838	0.39	+0.2
2,888,267	-		GFF2838	0.40	-0.6
2,888,277	+		GFF2838	0.40	-0.1
2,888,278	+		GFF2838	0.40	+0.3
2,888,286	-		GFF2838	0.41	-0.5
2,888,318	-		GFF2838	0.43	+1.5
2,888,318	-		GFF2838	0.43	+1.6
2,888,350	-		GFF2838	0.45	-0.4