Strain Fitness in Sphingobium sp. HT1-2 around GFF2616

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,637,054	+		GFF2615	0.34	-1.3
2,637,056	-		GFF2615	0.34	-1.9
2,637,056	-		GFF2615	0.34	-0.6
2,637,058	+		GFF2615	0.35	-0.3
2,637,058	+		GFF2615	0.35	+1.6
2,637,076	-		GFF2615	0.37	+0.4
2,637,077	+		GFF2615	0.37	-0.2
2,637,139	+		GFF2615	0.44	+0.6
2,637,139	+		GFF2615	0.44	+0.2
2,637,161	+		GFF2615	0.47	-1.5
2,637,161	+		GFF2615	0.47	+0.3
2,637,169	-		GFF2615	0.48	+0.2
2,637,179	-		GFF2615	0.49	-0.7
2,637,179	-		GFF2615	0.49	-0.9
2,637,284	-		GFF2615	0.61	-0.0
2,637,284	-		GFF2615	0.61	-1.6
2,637,284	-		GFF2615	0.61	-0.7
2,637,299	+		GFF2615	0.63	-0.3
2,637,306	+		GFF2615	0.63	-0.7
2,637,355	+		GFF2615	0.69	-1.7
2,637,359	+		GFF2615	0.70	-0.1
2,637,359	+		GFF2615	0.70	-0.6
2,637,363	-		GFF2615	0.70	-1.4
2,637,391	+		GFF2615	0.73	-2.3
2,637,396	-		GFF2615	0.74	+0.5
2,637,399	-		GFF2615	0.74	-1.3
2,637,399	-		GFF2615	0.74	-0.8
2,637,419	+		GFF2615	0.77	+1.0
2,637,420	+		GFF2615	0.77	-0.1
2,637,420	+		GFF2615	0.77	-0.7
2,637,428	-		GFF2615	0.78	-2.1
2,637,428	-		GFF2615	0.78	-1.9
2,637,433	-		GFF2615	0.78	-0.6
2,637,439	-		GFF2615	0.79	-0.2
2,637,449	+		GFF2615	0.80	-0.7
2,637,522	+		GFF2615	0.89	-1.0
2,637,528	+		GFF2615	0.89	+1.3
2,637,557	+				+0.1
2,637,557	+				-0.2
2,637,564	+				-2.6
2,637,565	-				-0.7
2,637,572	-				-0.3
2,637,583	+				-1.0
2,637,583	+				-0.6
2,637,601	-				+0.9
2,637,601	-				-0.6
2,637,601	-				+0.5
2,637,601	-				-1.5
2,637,601	-				-0.1
2,637,605	+				+1.5
2,637,605	+				-0.1
2,637,605	+				-0.8
2,637,610	+				-0.1
2,637,610	+				+0.8
2,637,610	+				-1.5
2,637,610	+				-0.5
2,637,613	-				-0.4
2,637,618	-				+0.1
2,637,618	-				-0.2
2,637,618	-				-2.1
2,637,644	-				+0.2
2,637,648	+				-0.6
2,637,656	-				-0.8
2,637,665	+				-0.5
2,637,666	+				+0.2
2,637,666	+				+2.0
2,637,666	+				+0.3
2,637,666	+				-2.0
2,637,674	-				+0.9
2,637,676	+				+1.2
2,637,677	+				-0.4
2,637,677	+				+0.6
2,637,684	-				-0.6
2,637,685	-				-1.0
2,637,685	-				-2.3
2,637,685	-				+0.4
2,637,707	-				-1.8
2,637,711	+				+0.4
2,637,734	+				-1.1
2,637,735	-				-0.6
2,637,742	-				-0.3
2,637,742	-				-1.5
2,637,742	-				-0.6
2,637,743	-				+0.9
2,637,775	+				+0.2
2,637,775	+				-0.6
2,637,775	+				-0.9
2,637,775	+				-0.2
2,637,775	+				+0.3
2,637,780	+				-0.4
2,637,780	+				+0.2
2,637,780	+				+0.3
2,637,780	+				+0.6
2,637,780	+				-1.3
2,637,780	+				+0.5
2,637,780	+				-0.8
2,637,780	+				-0.0
2,637,780	+				+0.1
2,637,780	+				+0.5
2,637,780	+				+0.4
2,637,780	+				-1.1
2,637,780	+				-2.6
2,637,780	+				-1.3
2,637,780	+				-1.1
2,637,780	+				-0.7
2,637,780	+				-2.3
2,637,780	+				-0.4
2,637,780	+				-1.9
2,637,780	+				+0.2
2,637,783	-				+0.9
2,637,785	+				+1.0
2,637,788	-				-1.3
2,637,788	-				-0.6
2,637,788	-				-0.9
2,637,788	-				-1.2
2,637,788	-				+1.3
2,637,788	-				-0.8
2,637,788	-				-0.0
2,637,788	-				-0.4
2,637,788	-				-0.7
2,637,788	-				+1.7
2,637,788	-				+0.7
2,637,788	-				-1.4
2,637,788	-				-0.2
2,637,788	-				+0.6
2,637,788	-				-1.4
2,637,788	-				-0.2
2,637,788	-				-0.8
2,637,788	-				-1.6
2,637,788	-				+1.0
2,637,790	+				-0.4
2,637,793	-				+1.1
2,637,793	-				-0.4
2,637,798	-				+0.2
2,637,808	+				-2.1
2,637,808	+				-1.9
2,637,816	-				-0.5
2,637,820	+				-1.1
2,637,821	+				-1.2
2,637,821	+				+1.1
2,637,821	+				+0.0
2,637,826	-				+0.1
2,637,829	-				-0.5
2,637,836	-				-2.5
2,637,840	+				-0.3
2,637,886	-				-1.5
2,637,895	-				+0.3
2,637,913	+				-0.1
2,637,921	-				-0.4
2,637,934	+				-0.6
2,637,993	-				+0.5
2,637,993	-				+0.6
2,637,993	-				-2.3
2,638,008	+				+0.1
2,638,015	-				-0.6
2,638,015	-				-0.8
2,638,039	-				+0.9
2,638,049	+				-0.1
2,638,062	-				+1.2
2,638,081	+				-1.4
2,638,089	-				-1.8
2,638,089	-				-0.6
2,638,089	-				-0.4
2,638,112	+		GFF2616	0.14	-0.7
2,638,120	-		GFF2616	0.16	+1.0
2,638,131	+		GFF2616	0.18	-0.3
2,638,135	-		GFF2616	0.18	+1.1
2,638,139	-		GFF2616	0.19	-1.8
2,638,163	+		GFF2616	0.24	+0.7
2,638,173	+		GFF2616	0.26	-0.0
2,638,209	-		GFF2616	0.33	-0.2
2,638,245	-		GFF2616	0.39	+0.4
2,638,277	+		GFF2616	0.46	+0.1
2,638,286	+		GFF2616	0.47	-0.2
2,638,286	+		GFF2616	0.47	-1.2
2,638,286	+		GFF2616	0.47	-1.7
2,638,286	+		GFF2616	0.47	-1.5
2,638,286	+		GFF2616	0.47	+0.3
2,638,286	+		GFF2616	0.47	-1.6
2,638,286	+		GFF2616	0.47	+0.3
2,638,294	-		GFF2616	0.49	-0.9
2,638,294	-		GFF2616	0.49	-0.1
2,638,294	-		GFF2616	0.49	-1.0
2,638,294	-		GFF2616	0.49	-0.8
2,638,294	-		GFF2616	0.49	-1.2
2,638,331	-		GFF2616	0.56	-0.4
2,638,338	+		GFF2616	0.57	+0.4
2,638,349	+		GFF2616	0.59	-0.4
2,638,354	+		GFF2616	0.60	-0.7
2,638,354	+		GFF2616	0.60	+0.9
2,638,356	+		GFF2616	0.61	-0.5
2,638,356	+		GFF2616	0.61	-0.6
2,638,357	-		GFF2616	0.61	-0.1
2,638,362	-		GFF2616	0.62	+0.4
2,638,362	-		GFF2616	0.62	-0.1
2,638,364	-		GFF2616	0.62	-1.1
2,638,369	+		GFF2616	0.63	-0.9
2,638,377	-		GFF2616	0.65	-1.8
2,638,377	-		GFF2616	0.65	-0.7
2,638,377	-		GFF2616	0.65	-0.5
2,638,377	-		GFF2616	0.65	-0.4
2,638,379	+		GFF2616	0.65	+0.4
2,638,380	+		GFF2616	0.65	-0.8
2,638,387	-		GFF2616	0.66	+0.9
2,638,387	-		GFF2616	0.66	-0.1
2,638,387	-		GFF2616	0.66	+0.1
2,638,387	-		GFF2616	0.66	-0.2
2,638,394	-		GFF2616	0.68	-0.9
2,638,406	+		GFF2616	0.70	+0.8
2,638,424	+		GFF2616	0.74	-2.6
2,638,424	+		GFF2616	0.74	-0.5
2,638,478	+		GFF2616	0.84	-0.3
2,638,483	+		GFF2616	0.85	+0.8
2,638,489	+		GFF2616	0.86	-0.8
2,638,492	-		GFF2616	0.86	-0.3
2,638,494	+		GFF2616	0.87	+0.3
2,638,501	-		GFF2616	0.88	-0.3
2,638,502	-		GFF2616	0.88	-1.0
2,638,510	+				-0.6
2,638,518	-				-1.3
2,638,527	+				-1.2
2,638,557	+				-2.1
2,638,557	+				-0.3
2,638,557	+				+0.4
2,638,557	+				-0.8
2,638,565	-				-0.8
2,638,565	-				-0.3
2,638,567	-				+0.5
2,638,595	+				+0.7
2,638,600	+				-0.7
2,638,608	-				-1.0
2,638,613	+				-0.3
2,638,613	+				+0.8
2,638,613	+				-1.0
2,638,613	+				-0.5
2,638,613	+				+0.4
2,638,619	-				-0.2
2,638,621	-				+0.7
2,638,623	+				-1.3
2,638,635	-				+0.8
2,638,635	-				-0.5
2,638,641	-				+0.7
2,638,678	+				+0.2
2,638,707	+				-1.0
2,638,717	+				-0.3
2,638,729	-				-2.2
2,638,740	+		GFF2617	0.11	+1.1
2,638,748	-		GFF2617	0.12	-1.3
2,638,758	-		GFF2617	0.14	-0.6
2,638,762	+		GFF2617	0.14	+0.4
2,638,762	+		GFF2617	0.14	+0.3
2,638,762	+		GFF2617	0.14	-1.7
2,638,762	+		GFF2617	0.14	-0.8
2,638,762	+		GFF2617	0.14	-1.4
2,638,767	+		GFF2617	0.15	+0.0
2,638,767	+		GFF2617	0.15	+0.2
2,638,767	+		GFF2617	0.15	-1.2
2,638,768	-		GFF2617	0.15	-1.2
2,638,768	-		GFF2617	0.15	+0.5
2,638,769	+		GFF2617	0.15	-1.3
2,638,770	-		GFF2617	0.15	-1.0
2,638,770	-		GFF2617	0.15	-2.3
2,638,770	-		GFF2617	0.15	+0.5
2,638,770	-		GFF2617	0.15	+0.5
2,638,770	-		GFF2617	0.15	+0.6
2,638,770	-		GFF2617	0.15	+0.4
2,638,770	-		GFF2617	0.15	-1.2
2,638,770	-		GFF2617	0.15	+0.3
2,638,770	-		GFF2617	0.15	+0.7
2,638,770	-		GFF2617	0.15	-1.2
2,638,775	-		GFF2617	0.16	-0.5
2,638,777	-		GFF2617	0.16	-2.7
2,638,777	-		GFF2617	0.16	-0.0
2,638,797	-		GFF2617	0.19	+0.5
2,638,824	-		GFF2617	0.23	+0.4
2,638,829	-		GFF2617	0.24	-0.6
2,638,829	-		GFF2617	0.24	-1.8
2,638,837	+		GFF2617	0.25	-1.3
2,638,845	-		GFF2617	0.26	+0.6
2,638,851	+		GFF2617	0.27	-1.8
2,638,856	+		GFF2617	0.27	-0.9
2,638,866	+		GFF2617	0.29	+0.6
2,638,866	+		GFF2617	0.29	-1.2
2,638,866	+		GFF2617	0.29	-0.5
2,638,866	+		GFF2617	0.29	-0.4
2,638,866	+		GFF2617	0.29	-1.2
2,638,866	+		GFF2617	0.29	-0.4
2,638,874	-		GFF2617	0.30	-2.0
2,638,874	-		GFF2617	0.30	+0.7
2,638,874	-		GFF2617	0.30	-2.3
2,638,874	-		GFF2617	0.30	-0.3
2,638,874	-		GFF2617	0.30	-0.2
2,638,874	-		GFF2617	0.30	-0.4
2,638,874	-		GFF2617	0.30	-0.2
2,638,874	-		GFF2617	0.30	-0.2
2,638,875	+		GFF2617	0.30	+0.2
2,638,881	-		GFF2617	0.31	-0.7
2,638,882	+		GFF2617	0.31	+0.3
2,638,882	+		GFF2617	0.31	-0.7
2,638,916	+		GFF2617	0.36	-1.0
2,638,942	+		GFF2617	0.39	+0.9
2,638,957	+		GFF2617	0.42	-0.2
2,638,958	-		GFF2617	0.42	-2.2
2,638,976	+		GFF2617	0.44	+0.0
2,638,995	+		GFF2617	0.47	-0.6
2,639,008	+		GFF2617	0.49	-0.8
2,639,012	+		GFF2617	0.49	-0.1
2,639,064	+		GFF2617	0.56	+1.3
2,639,064	-		GFF2617	0.56	-1.2
2,639,067	-		GFF2617	0.57	+0.1
2,639,067	-		GFF2617	0.57	-2.3
2,639,069	+		GFF2617	0.57	+0.9
2,639,077	-		GFF2617	0.58	-0.6
2,639,077	-		GFF2617	0.58	+0.3
2,639,118	-		GFF2617	0.64	+1.6
2,639,124	+		GFF2617	0.65	+1.2
2,639,163	+		GFF2617	0.70	-1.4
2,639,179	+		GFF2617	0.73	-0.7
2,639,179	+		GFF2617	0.73	-1.4
2,639,183	+		GFF2617	0.73	-1.2
2,639,187	-		GFF2617	0.74	+1.0
2,639,190	+		GFF2617	0.74	+0.6
2,639,190	+		GFF2617	0.74	-0.9
2,639,191	-		GFF2617	0.74	-0.5
2,639,200	+		GFF2617	0.75	-0.4
2,639,200	+		GFF2617	0.75	+0.6
2,639,203	-		GFF2617	0.76	-0.2
2,639,206	-		GFF2617	0.76	-0.8
2,639,220	+		GFF2617	0.78	+0.3
2,639,221	+		GFF2617	0.78	-0.9
2,639,225	+		GFF2617	0.79	-0.6
2,639,229	-		GFF2617	0.79	-0.8
2,639,256	+		GFF2617	0.83	+0.4
2,639,256	+		GFF2617	0.83	-0.4
2,639,256	+		GFF2617	0.83	-0.6
2,639,256	+		GFF2617	0.83	-2.3
2,639,256	+		GFF2617	0.83	-0.6
2,639,256	+		GFF2617	0.83	+1.4
2,639,261	+		GFF2617	0.84	+1.4
2,639,261	+		GFF2617	0.84	-1.4
2,639,264	-		GFF2617	0.84	+0.7
2,639,264	-		GFF2617	0.84	-0.5
2,639,264	-		GFF2617	0.84	-0.0
2,639,264	-		GFF2617	0.84	+0.1
2,639,267	+		GFF2617	0.85	-0.5
2,639,268	+		GFF2617	0.85	+0.4
2,639,269	-		GFF2617	0.85	+0.8
2,639,269	-		GFF2617	0.85	+0.8
2,639,269	-		GFF2617	0.85	-1.0
2,639,276	-		GFF2617	0.86	+1.2
2,639,295	+		GFF2617	0.89	-0.2
2,639,298	-		GFF2617	0.89	+0.3
2,639,332	-				-1.7
2,639,347	-				+0.2
2,639,354	+				-2.4
2,639,354	+				+0.8
2,639,362	-				+0.1
2,639,362	-				+0.3
2,639,362	-				+0.1
2,639,370	+				-0.1
2,639,370	+				+0.1
2,639,388	+				+1.0
2,639,389	+				-0.0
2,639,389	+				-1.9
2,639,389	+				-1.3
2,639,389	+				+1.1
2,639,397	-				+0.6
2,639,397	-				-0.3
2,639,424	-				-0.8
2,639,469	+				-0.3
2,639,474	+				-1.0
2,639,488	+				+0.1
2,639,488	+				+0.7
2,639,488	+				-1.5
2,639,488	+				-0.7
2,639,490	-				-0.3
2,639,494	+				+0.2
2,639,494	+				-0.3
2,639,494	+				+1.2
2,639,496	-				-1.3
2,639,497	-				+0.7
2,639,507	-				+1.1
2,639,520	+				+0.1
2,639,523	-				+0.1
2,639,524	-				-0.7
2,639,546	-				-0.3
2,639,546	-				-0.8