Strain Fitness in Sphingobium sp. HT1-2 around GFF259

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF257 and GFF258 are separated by 167 nucleotidesGFF258 and GFF259 are separated by 86 nucleotidesGFF259 and GFF260 are separated by 130 nucleotidesGFF260 and GFF261 overlap by 4 nucleotidesGFF261 and GFF262 overlap by 4 nucleotidesGFF262 and GFF263 are separated by 79 nucleotides GFF257 - hypothetical protein, at 259,320 to 259,940 GFF257 GFF258 - hypothetical protein, at 260,108 to 260,509 GFF258 GFF259 - Transposase A from transposon Tn554, at 260,596 to 261,123 GFF259 GFF260 - hypothetical protein, at 261,254 to 261,448 GFF260 GFF261 - hypothetical protein, at 261,445 to 261,657 GFF261 GFF262 - hypothetical protein, at 261,654 to 261,956 GFF262 GFF263 - hypothetical protein, at 262,036 to 262,371 GFF263 Position (kb) 260 261 262Strain fitness (log2 ratio) -2 -1 0 1 2at 259.641 kb on + strand, within GFF257at 259.643 kb on + strand, within GFF257at 259.643 kb on + strand, within GFF257at 259.649 kb on - strand, within GFF257at 259.702 kb on + strand, within GFF257at 259.702 kb on + strand, within GFF257at 259.703 kb on + strand, within GFF257at 259.710 kb on - strand, within GFF257at 259.726 kb on - strand, within GFF257at 259.726 kb on - strand, within GFF257at 259.755 kb on - strand, within GFF257at 259.767 kb on + strand, within GFF257at 259.791 kb on + strand, within GFF257at 259.791 kb on + strand, within GFF257at 259.796 kb on + strand, within GFF257at 259.796 kb on + strand, within GFF257at 259.796 kb on + strand, within GFF257at 259.799 kb on - strand, within GFF257at 259.804 kb on - strand, within GFF257at 259.804 kb on - strand, within GFF257at 259.833 kb on + strand, within GFF257at 259.841 kb on + strand, within GFF257at 259.849 kb on - strand, within GFF257at 259.849 kb on - strand, within GFF257at 259.849 kb on - strand, within GFF257at 259.849 kb on - strand, within GFF257at 259.849 kb on - strand, within GFF257at 259.865 kb on - strand, within GFF257at 259.911 kb on - strandat 259.951 kb on - strandat 259.983 kb on - strandat 260.007 kb on - strandat 260.007 kb on - strandat 260.032 kb on - strandat 260.090 kb on + strandat 260.092 kb on + strandat 260.156 kb on + strand, within GFF258at 260.164 kb on + strand, within GFF258at 260.172 kb on - strand, within GFF258at 260.198 kb on - strand, within GFF258at 260.212 kb on - strand, within GFF258at 260.217 kb on + strand, within GFF258at 260.285 kb on - strand, within GFF258at 260.320 kb on + strand, within GFF258at 260.334 kb on + strand, within GFF258at 260.341 kb on + strand, within GFF258at 260.341 kb on + strand, within GFF258at 260.369 kb on - strand, within GFF258at 260.386 kb on - strand, within GFF258at 260.390 kb on - strand, within GFF258at 260.405 kb on - strand, within GFF258at 260.413 kb on - strand, within GFF258at 260.429 kb on + strand, within GFF258at 260.660 kb on + strand, within GFF259at 260.660 kb on + strand, within GFF259at 260.660 kb on + strand, within GFF259at 260.660 kb on + strand, within GFF259at 260.685 kb on + strand, within GFF259at 260.688 kb on - strand, within GFF259at 260.688 kb on - strand, within GFF259at 260.688 kb on - strand, within GFF259at 260.688 kb on - strand, within GFF259at 260.705 kb on + strand, within GFF259at 260.748 kb on + strand, within GFF259at 260.749 kb on + strand, within GFF259at 260.756 kb on + strand, within GFF259at 260.756 kb on - strand, within GFF259at 260.765 kb on - strand, within GFF259at 260.793 kb on - strand, within GFF259at 260.818 kb on + strand, within GFF259at 260.820 kb on - strand, within GFF259at 260.821 kb on - strand, within GFF259at 260.837 kb on + strand, within GFF259at 260.845 kb on - strand, within GFF259at 260.850 kb on - strand, within GFF259at 260.917 kb on + strand, within GFF259at 260.918 kb on + strand, within GFF259at 260.918 kb on + strand, within GFF259at 260.918 kb on + strand, within GFF259at 260.928 kb on + strand, within GFF259at 260.930 kb on + strand, within GFF259at 260.930 kb on + strand, within GFF259at 260.930 kb on + strand, within GFF259at 260.953 kb on + strand, within GFF259at 260.953 kb on + strand, within GFF259at 260.963 kb on + strand, within GFF259at 260.963 kb on + strand, within GFF259at 260.963 kb on + strand, within GFF259at 260.963 kb on + strand, within GFF259at 260.978 kb on + strand, within GFF259at 260.986 kb on - strand, within GFF259at 260.991 kb on - strand, within GFF259at 261.003 kb on + strand, within GFF259at 261.005 kb on - strand, within GFF259at 261.009 kb on + strand, within GFF259at 261.011 kb on - strand, within GFF259at 261.015 kb on + strand, within GFF259at 261.015 kb on + strand, within GFF259at 261.017 kb on - strand, within GFF259at 261.041 kb on - strand, within GFF259at 261.046 kb on - strand, within GFF259at 261.109 kb on - strandat 261.142 kb on - strandat 261.211 kb on - strandat 261.278 kb on + strand, within GFF260at 261.387 kb on + strand, within GFF260at 261.393 kb on + strand, within GFF260at 261.393 kb on + strand, within GFF260at 261.395 kb on - strand, within GFF260at 261.398 kb on + strand, within GFF260at 261.401 kb on - strand, within GFF260at 261.411 kb on - strand, within GFF260at 261.431 kb on + strandat 261.439 kb on - strandat 261.439 kb on - strandat 261.443 kb on + strandat 261.443 kb on + strandat 261.443 kb on + strandat 261.451 kb on - strandat 261.451 kb on - strandat 261.451 kb on - strandat 261.451 kb on - strandat 261.451 kb on - strandat 261.451 kb on - strandat 261.468 kb on + strand, within GFF261at 261.468 kb on + strand, within GFF261at 261.487 kb on + strand, within GFF261at 261.487 kb on + strand, within GFF261at 261.497 kb on - strand, within GFF261at 261.497 kb on - strand, within GFF261at 261.519 kb on + strand, within GFF261at 261.519 kb on + strand, within GFF261at 261.519 kb on + strand, within GFF261at 261.527 kb on - strand, within GFF261at 261.532 kb on - strand, within GFF261at 261.542 kb on + strand, within GFF261at 261.545 kb on - strand, within GFF261at 261.552 kb on + strand, within GFF261at 261.555 kb on - strand, within GFF261at 261.559 kb on + strand, within GFF261at 261.559 kb on + strand, within GFF261at 261.559 kb on + strand, within GFF261at 261.560 kb on - strand, within GFF261at 261.576 kb on + strand, within GFF261at 261.583 kb on + strand, within GFF261at 261.583 kb on + strand, within GFF261at 261.583 kb on + strand, within GFF261at 261.591 kb on - strand, within GFF261at 261.591 kb on - strand, within GFF261at 261.599 kb on + strand, within GFF261at 261.603 kb on + strand, within GFF261at 261.603 kb on + strand, within GFF261at 261.603 kb on + strand, within GFF261at 261.603 kb on + strand, within GFF261at 261.658 kb on - strandat 261.668 kb on - strandat 261.678 kb on - strandat 261.678 kb on - strandat 261.720 kb on + strand, within GFF262at 261.724 kb on + strand, within GFF262at 261.724 kb on + strand, within GFF262at 261.731 kb on - strand, within GFF262at 261.739 kb on + strand, within GFF262at 261.742 kb on - strand, within GFF262at 261.767 kb on + strand, within GFF262at 261.796 kb on + strand, within GFF262at 261.798 kb on + strand, within GFF262at 261.824 kb on + strand, within GFF262at 261.824 kb on + strand, within GFF262at 261.829 kb on + strand, within GFF262at 261.829 kb on + strand, within GFF262at 261.832 kb on - strand, within GFF262at 261.832 kb on - strand, within GFF262at 261.832 kb on - strand, within GFF262at 261.832 kb on - strand, within GFF262at 261.832 kb on - strand, within GFF262at 261.848 kb on + strand, within GFF262at 261.911 kb on - strand, within GFF262at 261.914 kb on - strand, within GFF262at 261.928 kb on - strandat 261.945 kb on - strandat 261.950 kb on + strandat 261.950 kb on + strandat 261.958 kb on - strandat 261.958 kb on - strandat 261.958 kb on - strandat 261.958 kb on - strandat 261.960 kb on - strandat 261.966 kb on - strandat 261.966 kb on - strandat 261.966 kb on - strandat 261.986 kb on + strandat 261.986 kb on + strandat 261.996 kb on + strandat 262.003 kb on + strandat 262.003 kb on + strandat 262.011 kb on - strandat 262.049 kb on - strandat 262.066 kb on + strandat 262.073 kb on + strand, within GFF263at 262.073 kb on + strand, within GFF263at 262.074 kb on - strand, within GFF263at 262.078 kb on + strand, within GFF263at 262.081 kb on - strand, within GFF263at 262.086 kb on - strand, within GFF263at 262.086 kb on - strand, within GFF263at 262.086 kb on - strand, within GFF263at 262.088 kb on + strand, within GFF263

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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259,641 + GFF257 0.52 -1.1
259,643 + GFF257 0.52 -1.6
259,643 + GFF257 0.52 +1.5
259,649 - GFF257 0.53 +0.8
259,702 + GFF257 0.62 -0.6
259,702 + GFF257 0.62 -1.1
259,703 + GFF257 0.62 -0.2
259,710 - GFF257 0.63 +0.2
259,726 - GFF257 0.65 -1.2
259,726 - GFF257 0.65 +0.2
259,755 - GFF257 0.70 +1.4
259,767 + GFF257 0.72 +0.3
259,791 + GFF257 0.76 -0.1
259,791 + GFF257 0.76 -0.2
259,796 + GFF257 0.77 -0.2
259,796 + GFF257 0.77 +0.5
259,796 + GFF257 0.77 +1.0
259,799 - GFF257 0.77 +0.7
259,804 - GFF257 0.78 -1.8
259,804 - GFF257 0.78 -1.0
259,833 + GFF257 0.83 +2.1
259,841 + GFF257 0.84 -0.5
259,849 - GFF257 0.85 +0.2
259,849 - GFF257 0.85 -0.3
259,849 - GFF257 0.85 +1.2
259,849 - GFF257 0.85 +1.0
259,849 - GFF257 0.85 +2.0
259,865 - GFF257 0.88 -1.7
259,911 - -0.5
259,951 - -0.4
259,983 - +0.5
260,007 - +1.8
260,007 - -1.0
260,032 - +0.5
260,090 + -0.5
260,092 + +0.5
260,156 + GFF258 0.12 +0.6
260,164 + GFF258 0.14 +1.1
260,172 - GFF258 0.16 -2.3
260,198 - GFF258 0.22 +1.2
260,212 - GFF258 0.26 +1.2
260,217 + GFF258 0.27 -1.8
260,285 - GFF258 0.44 -0.3
260,320 + GFF258 0.53 -1.1
260,334 + GFF258 0.56 +1.0
260,341 + GFF258 0.58 -0.4
260,341 + GFF258 0.58 +0.7
260,369 - GFF258 0.65 -2.6
260,386 - GFF258 0.69 +0.7
260,390 - GFF258 0.70 +0.7
260,405 - GFF258 0.74 -0.7
260,413 - GFF258 0.76 +1.0
260,429 + GFF258 0.80 -1.1
260,660 + GFF259 0.12 +0.9
260,660 + GFF259 0.12 +0.4
260,660 + GFF259 0.12 +1.1
260,660 + GFF259 0.12 -0.8
260,685 + GFF259 0.17 -0.2
260,688 - GFF259 0.17 -0.3
260,688 - GFF259 0.17 +0.9
260,688 - GFF259 0.17 +0.3
260,688 - GFF259 0.17 -0.1
260,705 + GFF259 0.21 -0.2
260,748 + GFF259 0.29 -1.3
260,749 + GFF259 0.29 +0.7
260,756 + GFF259 0.30 -1.2
260,756 - GFF259 0.30 +0.1
260,765 - GFF259 0.32 +0.1
260,793 - GFF259 0.37 +0.4
260,818 + GFF259 0.42 +0.3
260,820 - GFF259 0.42 -2.3
260,821 - GFF259 0.43 +0.8
260,837 + GFF259 0.46 +0.7
260,845 - GFF259 0.47 -0.2
260,850 - GFF259 0.48 +0.0
260,917 + GFF259 0.61 +1.1
260,918 + GFF259 0.61 -1.1
260,918 + GFF259 0.61 -0.7
260,918 + GFF259 0.61 -0.7
260,928 + GFF259 0.63 +0.1
260,930 + GFF259 0.63 +0.3
260,930 + GFF259 0.63 -0.8
260,930 + GFF259 0.63 +0.8
260,953 + GFF259 0.68 +1.2
260,953 + GFF259 0.68 +0.7
260,963 + GFF259 0.70 +1.6
260,963 + GFF259 0.70 -0.5
260,963 + GFF259 0.70 -1.5
260,963 + GFF259 0.70 -0.2
260,978 + GFF259 0.72 -0.2
260,986 - GFF259 0.74 +1.0
260,991 - GFF259 0.75 -0.5
261,003 + GFF259 0.77 -2.5
261,005 - GFF259 0.77 +0.2
261,009 + GFF259 0.78 -1.4
261,011 - GFF259 0.79 -1.4
261,015 + GFF259 0.79 +0.3
261,015 + GFF259 0.79 +0.5
261,017 - GFF259 0.80 +0.1
261,041 - GFF259 0.84 -0.2
261,046 - GFF259 0.85 -0.6
261,109 - -0.6
261,142 - -1.0
261,211 - +1.7
261,278 + GFF260 0.12 -0.2
261,387 + GFF260 0.68 +0.2
261,393 + GFF260 0.71 -1.1
261,393 + GFF260 0.71 -1.0
261,395 - GFF260 0.72 +0.0
261,398 + GFF260 0.74 +0.2
261,401 - GFF260 0.75 +0.2
261,411 - GFF260 0.81 +1.9
261,431 + +0.2
261,439 - -0.4
261,439 - -0.5
261,443 + -0.6
261,443 + +1.0
261,443 + +0.9
261,451 - -2.0
261,451 - +0.4
261,451 - +0.2
261,451 - -0.2
261,451 - -0.4
261,451 - +0.0
261,468 + GFF261 0.11 -0.2
261,468 + GFF261 0.11 +0.7
261,487 + GFF261 0.20 +0.6
261,487 + GFF261 0.20 +0.7
261,497 - GFF261 0.24 -2.3
261,497 - GFF261 0.24 -1.2
261,519 + GFF261 0.35 +0.8
261,519 + GFF261 0.35 +0.0
261,519 + GFF261 0.35 +0.6
261,527 - GFF261 0.38 +0.5
261,532 - GFF261 0.41 +2.0
261,542 + GFF261 0.46 -0.3
261,545 - GFF261 0.47 -0.3
261,552 + GFF261 0.50 +1.3
261,555 - GFF261 0.52 +1.0
261,559 + GFF261 0.54 -1.4
261,559 + GFF261 0.54 +1.3
261,559 + GFF261 0.54 -0.2
261,560 - GFF261 0.54 +0.5
261,576 + GFF261 0.62 +0.1
261,583 + GFF261 0.65 -2.5
261,583 + GFF261 0.65 +1.1
261,583 + GFF261 0.65 -0.4
261,591 - GFF261 0.69 -0.7
261,591 - GFF261 0.69 +1.7
261,599 + GFF261 0.72 -0.3
261,603 + GFF261 0.74 +1.1
261,603 + GFF261 0.74 +0.0
261,603 + GFF261 0.74 +1.0
261,603 + GFF261 0.74 +2.1
261,658 - +0.7
261,668 - +1.7
261,678 - +0.4
261,678 - +0.3
261,720 + GFF262 0.22 +0.8
261,724 + GFF262 0.23 -0.2
261,724 + GFF262 0.23 -1.3
261,731 - GFF262 0.25 -0.3
261,739 + GFF262 0.28 +0.6
261,742 - GFF262 0.29 +1.0
261,767 + GFF262 0.37 -0.2
261,796 + GFF262 0.47 -0.8
261,798 + GFF262 0.48 -0.6
261,824 + GFF262 0.56 +0.1
261,824 + GFF262 0.56 +0.4
261,829 + GFF262 0.58 +0.4
261,829 + GFF262 0.58 -0.2
261,832 - GFF262 0.59 -0.5
261,832 - GFF262 0.59 -0.2
261,832 - GFF262 0.59 -0.7
261,832 - GFF262 0.59 +0.1
261,832 - GFF262 0.59 +0.5
261,848 + GFF262 0.64 +0.6
261,911 - GFF262 0.85 -0.8
261,914 - GFF262 0.86 -0.5
261,928 - -0.3
261,945 - -0.5
261,950 + -2.2
261,950 + -1.8
261,958 - -0.8
261,958 - -0.9
261,958 - +0.7
261,958 - +0.5
261,960 - -1.3
261,966 - +0.1
261,966 - -0.1
261,966 - -0.8
261,986 + -1.5
261,986 + -1.3
261,996 + +0.8
262,003 + +0.5
262,003 + -1.2
262,011 - -0.3
262,049 - +0.1
262,066 + -0.2
262,073 + GFF263 0.11 -1.2
262,073 + GFF263 0.11 -0.2
262,074 - GFF263 0.11 -0.8
262,078 + GFF263 0.12 -0.2
262,081 - GFF263 0.13 +1.0
262,086 - GFF263 0.15 -0.1
262,086 - GFF263 0.15 -0.7
262,086 - GFF263 0.15 -1.2
262,088 + GFF263 0.15 -0.2

Or see this region's nucleotide sequence