Strain Fitness in Sphingobium sp. HT1-2 around GFF2472

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,495,938	+		GFF2471	0.54	+1.3
2,495,944	+		GFF2471	0.54	-1.7
2,495,964	+		GFF2471	0.55	+0.2
2,495,966	-		GFF2471	0.55	+1.7
2,495,972	-		GFF2471	0.56	+0.4
2,496,002	-		GFF2471	0.57	-0.4
2,496,021	+		GFF2471	0.58	-1.6
2,496,034	-		GFF2471	0.59	-1.3
2,496,039	-		GFF2471	0.59	-0.2
2,496,056	+		GFF2471	0.60	-1.5
2,496,056	+		GFF2471	0.60	-0.7
2,496,056	+		GFF2471	0.60	-1.3
2,496,066	+		GFF2471	0.60	-0.5
2,496,066	+		GFF2471	0.60	-1.0
2,496,066	+		GFF2471	0.60	-0.3
2,496,080	-		GFF2471	0.61	-2.0
2,496,085	+		GFF2471	0.61	-0.2
2,496,094	+		GFF2471	0.61	+0.2
2,496,099	-		GFF2471	0.62	-0.1
2,496,101	+		GFF2471	0.62	+1.5
2,496,101	+		GFF2471	0.62	-0.6
2,496,102	-		GFF2471	0.62	-1.0
2,496,102	-		GFF2471	0.62	-2.3
2,496,106	+		GFF2471	0.62	-1.2
2,496,109	-		GFF2471	0.62	-2.1
2,496,109	-		GFF2471	0.62	-0.6
2,496,111	+		GFF2471	0.62	+0.9
2,496,111	+		GFF2471	0.62	+0.7
2,496,119	-		GFF2471	0.63	-1.7
2,496,126	+		GFF2471	0.63	-1.3
2,496,127	-		GFF2471	0.63	-1.1
2,496,127	-		GFF2471	0.63	-1.4
2,496,132	-		GFF2471	0.63	-0.3
2,496,134	+		GFF2471	0.63	-0.8
2,496,134	+		GFF2471	0.63	-0.6
2,496,160	+		GFF2471	0.64	+0.1
2,496,165	-		GFF2471	0.65	-1.5
2,496,188	+		GFF2471	0.66	-1.1
2,496,188	+		GFF2471	0.66	-0.5
2,496,188	+		GFF2471	0.66	+0.4
2,496,188	+		GFF2471	0.66	-0.4
2,496,188	+		GFF2471	0.66	-1.8
2,496,188	+		GFF2471	0.66	-1.3
2,496,188	+		GFF2471	0.66	+1.0
2,496,196	-		GFF2471	0.66	-0.3
2,496,196	-		GFF2471	0.66	-1.3
2,496,196	-		GFF2471	0.66	-0.1
2,496,196	-		GFF2471	0.66	-0.3
2,496,196	-		GFF2471	0.66	-1.4
2,496,196	-		GFF2471	0.66	-0.8
2,496,196	-		GFF2471	0.66	+0.1
2,496,196	-		GFF2471	0.66	+0.1
2,496,196	-		GFF2471	0.66	-1.2
2,496,206	-		GFF2471	0.67	-1.8
2,496,294	-		GFF2471	0.71	-1.5
2,496,295	+		GFF2471	0.71	-1.8
2,496,328	-		GFF2471	0.72	-2.2
2,496,330	+		GFF2471	0.72	-0.8
2,496,338	-		GFF2471	0.73	-0.5
2,496,338	-		GFF2471	0.73	-2.7
2,496,338	-		GFF2471	0.73	-0.8
2,496,372	+		GFF2471	0.74	-1.1
2,496,372	+		GFF2471	0.74	-2.1
2,496,377	+		GFF2471	0.75	-1.8
2,496,385	-		GFF2471	0.75	+0.1
2,496,391	+		GFF2471	0.75	-0.1
2,496,396	+		GFF2471	0.75	-1.5
2,496,399	-		GFF2471	0.76	-0.6
2,496,409	-		GFF2471	0.76	-0.6
2,496,414	-		GFF2471	0.76	-0.5
2,496,451	+		GFF2471	0.78	+0.0
2,496,469	+		GFF2471	0.79	-0.3
2,496,477	-		GFF2471	0.79	-0.9
2,496,477	-		GFF2471	0.79	+0.0
2,496,477	-		GFF2471	0.79	-1.1
2,496,579	+		GFF2471	0.84	+1.2
2,496,590	+		GFF2471	0.85	+0.9
2,496,610	-		GFF2471	0.85	-0.8
2,496,620	+		GFF2471	0.86	-0.8
2,496,621	+		GFF2471	0.86	-0.6
2,496,621	+		GFF2471	0.86	+0.5
2,496,621	+		GFF2471	0.86	-1.2
2,496,621	+		GFF2471	0.86	-0.4
2,496,621	+		GFF2471	0.86	+0.3
2,496,621	+		GFF2471	0.86	-2.1
2,496,621	+		GFF2471	0.86	+0.0
2,496,628	-		GFF2471	0.86	-0.2
2,496,629	-		GFF2471	0.86	-1.9
2,496,629	-		GFF2471	0.86	-0.8
2,496,629	-		GFF2471	0.86	-1.5
2,496,629	-		GFF2471	0.86	+0.3
2,496,629	-		GFF2471	0.86	-1.7
2,496,629	-		GFF2471	0.86	-1.4
2,496,629	-		GFF2471	0.86	-1.9
2,496,629	-		GFF2471	0.86	+0.3
2,496,631	-		GFF2471	0.86	+0.5
2,496,633	-		GFF2471	0.87	-1.6
2,496,636	+		GFF2471	0.87	-2.2
2,496,648	-		GFF2471	0.87	+0.3
2,496,703	+		GFF2471	0.90	-0.1
2,496,725	+				-1.3
2,496,733	-				-1.6
2,496,743	+				-0.4
2,496,748	+				-2.1
2,496,748	+				-2.6
2,496,748	+				-0.6
2,496,748	+				+0.3
2,496,753	+				+0.0
2,496,753	+				+1.1
2,496,753	+				-0.9
2,496,753	+				-0.2
2,496,756	-				-1.7
2,496,756	-				-2.3
2,496,756	-				-1.7
2,496,756	-				-1.3
2,496,761	-				-1.2
2,496,761	-				+0.6
2,496,761	-				-1.3
2,496,761	-				-0.4
2,496,766	-				-0.5
2,496,766	-				-1.3
2,496,766	-				-0.3
2,496,770	+				+0.5
2,496,827	+				+0.6
2,496,854	+				-0.3
2,496,854	+				+0.6
2,496,862	-				-0.7
2,496,862	-				-1.3
2,496,865	+				+0.3
2,496,870	+				+0.3
2,496,870	+				-0.6
2,496,870	+				-0.5
2,496,878	+				-1.8
2,496,878	-				+0.1
2,496,878	-				-1.8
2,496,888	+				-1.3
2,496,895	+				-1.4
2,496,896	-				-0.3
2,496,896	-				-0.2
2,496,896	-				-0.3
2,496,896	-				-1.1
2,496,903	-				-0.7
2,496,907	-				-1.8
2,496,932	+				+0.7
2,496,940	-				-0.4
2,496,947	-				-2.7
2,496,956	+				+0.4
2,496,960	+				+0.0
2,496,961	+				-1.8
2,496,961	+				-0.4
2,496,964	-				+1.7
2,496,964	-				-0.4
2,496,966	+				-0.8
2,496,969	-				-0.5
2,496,980	+				-0.7
2,497,039	-				-1.5
2,497,069	+				+0.2
2,497,069	+				-2.1
2,497,070	+				+1.1
2,497,070	+				+1.1
2,497,070	+				-0.2
2,497,070	+				-0.8
2,497,078	-				+0.7
2,497,078	-				+1.4
2,497,078	-				-1.2
2,497,104	+		GFF2472	0.12	+0.0
2,497,109	+		GFF2472	0.12	+0.6
2,497,147	-		GFF2472	0.14	+0.4
2,497,170	-		GFF2472	0.16	+0.1
2,497,189	-		GFF2472	0.17	-0.2
2,497,213	+		GFF2472	0.19	+1.8
2,497,221	-		GFF2472	0.19	-0.4
2,497,221	-		GFF2472	0.19	+1.1
2,497,221	-		GFF2472	0.19	+0.6
2,497,221	-		GFF2472	0.19	-0.7
2,497,231	-		GFF2472	0.20	-1.1
2,497,251	+		GFF2472	0.21	-1.3
2,497,284	+		GFF2472	0.23	-2.1
2,497,284	+		GFF2472	0.23	+2.2
2,497,292	-		GFF2472	0.24	-0.4
2,497,306	+		GFF2472	0.25	+1.5
2,497,308	+		GFF2472	0.25	-0.4
2,497,314	-		GFF2472	0.25	-1.8
2,497,316	-		GFF2472	0.25	-0.8
2,497,316	-		GFF2472	0.25	-0.4
2,497,316	-		GFF2472	0.25	+1.2
2,497,316	-		GFF2472	0.25	+0.0
2,497,334	+		GFF2472	0.27	+1.6
2,497,361	-		GFF2472	0.28	-0.1
2,497,403	+		GFF2472	0.31	-2.1
2,497,403	+		GFF2472	0.31	+0.8
2,497,403	+		GFF2472	0.31	-1.3
2,497,403	+		GFF2472	0.31	+1.0
2,497,403	+		GFF2472	0.31	-0.4
2,497,403	+		GFF2472	0.31	-0.4
2,497,403	+		GFF2472	0.31	-1.7
2,497,403	+		GFF2472	0.31	-2.2
2,497,408	+		GFF2472	0.31	-2.0
2,497,411	-		GFF2472	0.32	-0.1
2,497,411	-		GFF2472	0.32	-0.1
2,497,411	-		GFF2472	0.32	+0.7
2,497,411	-		GFF2472	0.32	+0.4
2,497,411	-		GFF2472	0.32	+0.5
2,497,411	-		GFF2472	0.32	+0.3
2,497,411	-		GFF2472	0.32	-0.4
2,497,416	-		GFF2472	0.32	-0.9
2,497,416	-		GFF2472	0.32	+0.6
2,497,421	-		GFF2472	0.32	-0.4
2,497,423	+		GFF2472	0.32	-0.6
2,497,441	-		GFF2472	0.34	+1.5
2,497,443	+		GFF2472	0.34	+0.9
2,497,443	-		GFF2472	0.34	+0.6
2,497,443	-		GFF2472	0.34	-0.1
2,497,451	-		GFF2472	0.34	+0.2
2,497,455	+		GFF2472	0.35	-1.3
2,497,482	+		GFF2472	0.36	+0.3
2,497,482	+		GFF2472	0.36	+1.7
2,497,482	+		GFF2472	0.36	+0.1
2,497,482	+		GFF2472	0.36	-1.1
2,497,485	-		GFF2472	0.37	-1.9
2,497,490	-		GFF2472	0.37	-0.3
2,497,496	-		GFF2472	0.37	-0.6
2,497,505	+		GFF2472	0.38	+0.9
2,497,550	+		GFF2472	0.41	-0.7
2,497,555	+		GFF2472	0.41	+0.2
2,497,563	-		GFF2472	0.42	-2.3
2,497,563	-		GFF2472	0.42	-2.2
2,497,569	-		GFF2472	0.42	+0.9
2,497,575	-		GFF2472	0.42	+0.6
2,497,597	+		GFF2472	0.44	+1.3
2,497,652	+		GFF2472	0.48	+0.3
2,497,667	-		GFF2472	0.48	-0.6
2,497,681	+		GFF2472	0.49	-1.0
2,497,681	-		GFF2472	0.49	-0.7
2,497,681	-		GFF2472	0.49	-0.9
2,497,681	-		GFF2472	0.49	+1.0
2,497,723	+		GFF2472	0.52	+0.0
2,497,726	-		GFF2472	0.52	-2.3
2,497,736	-		GFF2472	0.53	-0.8
2,497,759	+		GFF2472	0.55	+0.2
2,497,762	-		GFF2472	0.55	+0.1
2,497,762	-		GFF2472	0.55	+1.3
2,497,782	+		GFF2472	0.56	-0.7
2,497,790	-		GFF2472	0.57	-0.8
2,497,790	-		GFF2472	0.57	+0.3
2,497,790	-		GFF2472	0.57	-1.3
2,497,793	-		GFF2472	0.57	+0.6
2,497,811	-		GFF2472	0.58	-0.5
2,497,832	+		GFF2472	0.59	-1.5
2,497,833	-		GFF2472	0.59	-0.4
2,497,838	-		GFF2472	0.60	+1.0
2,497,840	-		GFF2472	0.60	-0.4
2,497,844	+		GFF2472	0.60	-0.9
2,497,849	+		GFF2472	0.60	+0.0
2,497,849	+		GFF2472	0.60	-0.4
2,497,849	+		GFF2472	0.60	-2.1
2,497,857	-		GFF2472	0.61	-1.6
2,497,872	-		GFF2472	0.62	+0.7
2,497,910	-		GFF2472	0.64	+0.4
2,497,922	+		GFF2472	0.65	-0.2
2,497,928	-		GFF2472	0.66	-2.3
2,497,935	-		GFF2472	0.66	+0.4
2,497,946	+		GFF2472	0.67	-0.4
2,497,958	-		GFF2472	0.68	-0.8
2,497,975	+		GFF2472	0.69	-0.2
2,498,095	+		GFF2472	0.77	-1.1
2,498,095	+		GFF2472	0.77	-0.0
2,498,100	+		GFF2472	0.77	+0.2
2,498,103	-		GFF2472	0.77	+0.1
2,498,140	+		GFF2472	0.80	+0.8
2,498,140	+		GFF2472	0.80	+0.9
2,498,141	+		GFF2472	0.80	-1.0
2,498,190	+		GFF2472	0.83	-0.3
2,498,190	+		GFF2472	0.83	-1.1
2,498,190	+		GFF2472	0.83	+0.3
2,498,190	+		GFF2472	0.83	-0.2
2,498,190	+		GFF2472	0.83	+0.9
2,498,190	+		GFF2472	0.83	+0.3
2,498,190	+		GFF2472	0.83	+1.2
2,498,190	+		GFF2472	0.83	-0.5
2,498,193	-		GFF2472	0.83	-0.4
2,498,198	-		GFF2472	0.83	-1.5
2,498,198	-		GFF2472	0.83	-0.8
2,498,198	-		GFF2472	0.83	+0.3
2,498,198	-		GFF2472	0.83	-1.5
2,498,198	-		GFF2472	0.83	-0.5
2,498,221	+		GFF2472	0.85	-1.9
2,498,247	-		GFF2472	0.87	+0.3
2,498,247	-		GFF2472	0.87	-1.3
2,498,258	+		GFF2472	0.87	-1.3
2,498,263	+		GFF2472	0.88	+0.6
2,498,266	-		GFF2472	0.88	-0.1
2,498,266	-		GFF2472	0.88	+0.8
2,498,311	+				-0.6
2,498,336	+				-2.3
2,498,336	+				+0.5
2,498,336	+				-0.3
2,498,336	+				-2.1
2,498,336	+				-0.4
2,498,336	+				-0.8
2,498,336	+				+0.0
2,498,336	+				-2.2
2,498,344	-				-0.1
2,498,344	-				-0.1
2,498,344	-				+1.5
2,498,344	-				-0.9
2,498,372	-				-1.1
2,498,380	+				-0.4
2,498,384	+				+1.3
2,498,399	+				-0.9
2,498,399	+				+0.4
2,498,399	+				-0.3
2,498,407	-				+0.1
2,498,411	-				-1.0
2,498,417	-				-0.1
2,498,417	-				-2.4
2,498,418	+				+1.1
2,498,440	+				+0.5
2,498,441	+				-0.5
2,498,445	+				+0.6
2,498,445	+				+0.8
2,498,445	+				+0.2
2,498,445	+				-0.7
2,498,445	+				-1.9
2,498,445	+				-2.2
2,498,445	+				+0.8
2,498,445	+				+0.0
2,498,445	+				-0.2
2,498,445	+				-0.4
2,498,445	+				-1.1
2,498,445	+				-0.3
2,498,445	+				-0.5
2,498,445	+				-0.9
2,498,445	+				+0.3
2,498,445	+				+0.7
2,498,445	+				-0.1
2,498,445	+				+0.4
2,498,445	+				-0.5
2,498,445	+				-0.4
2,498,445	+				+0.5
2,498,445	+				-0.7
2,498,451	+				+0.5
2,498,451	+				+0.2
2,498,451	+				+0.8
2,498,453	-				-0.7
2,498,453	-				-1.1
2,498,453	-				-1.1
2,498,453	-				-1.2
2,498,453	-				-1.5
2,498,453	-				-0.6
2,498,453	-				+0.0
2,498,453	-				+0.0
2,498,453	-				+0.9
2,498,453	-				+0.6
2,498,453	-				-1.3
2,498,453	-				-0.3
2,498,453	-				+0.8
2,498,453	-				-1.9
2,498,453	-				-0.8
2,498,453	-				-0.6
2,498,453	-				-0.6
2,498,459	-				-0.5
2,498,644	-				-0.4
2,498,726	-				+0.6
2,498,750	+		GFF2474	0.14	-0.5
2,498,752	+		GFF2474	0.14	+1.7
2,498,758	+		GFF2474	0.15	-0.9
2,498,768	+		GFF2474	0.17	-1.7
2,498,770	-		GFF2474	0.17	+1.4
2,498,799	+		GFF2474	0.22	-0.7
2,498,812	+		GFF2474	0.24	-0.8
2,498,817	+		GFF2474	0.25	+1.1
2,498,817	+		GFF2474	0.25	+0.4
2,498,820	-		GFF2474	0.25	+0.3
2,498,820	-		GFF2474	0.25	-0.9
2,498,820	-		GFF2474	0.25	+0.1
2,498,820	-		GFF2474	0.25	-0.3
2,498,822	+		GFF2474	0.25	-2.0
2,498,822	+		GFF2474	0.25	-0.3
2,498,841	+		GFF2474	0.28	-0.7
2,498,868	+		GFF2474	0.33	-0.4
2,498,871	-		GFF2474	0.33	-0.2
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