Strain Fitness in Sphingobium sp. HT1-2 around GFF2455

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,475,973	+				-0.5
2,475,973	+				+1.2
2,475,981	-				+0.5
2,475,981	-				-0.3
2,475,981	-				+0.8
2,475,996	+				+0.3
2,475,996	+				+0.4
2,475,996	+				+0.2
2,475,996	+				+0.2
2,475,996	+				+0.2
2,476,003	+				-0.3
2,476,004	-		GFF2454	0.10	-1.2
2,476,004	-		GFF2454	0.10	-1.3
2,476,004	-		GFF2454	0.10	-0.2
2,476,011	-		GFF2454	0.11	-0.6
2,476,031	+		GFF2454	0.12	-1.0
2,476,033	+		GFF2454	0.13	-1.7
2,476,041	+		GFF2454	0.13	-0.7
2,476,041	+		GFF2454	0.13	-1.0
2,476,050	-		GFF2454	0.14	-0.7
2,476,059	+		GFF2454	0.15	-0.6
2,476,067	-		GFF2454	0.16	-0.0
2,476,067	-		GFF2454	0.16	+1.8
2,476,069	+		GFF2454	0.16	-0.2
2,476,092	-		GFF2454	0.18	-2.6
2,476,111	-		GFF2454	0.20	-2.7
2,476,144	-		GFF2454	0.23	+1.0
2,476,152	-		GFF2454	0.24	+0.5
2,476,173	-		GFF2454	0.26	-0.0
2,476,175	-		GFF2454	0.26	+0.2
2,476,195	-		GFF2454	0.28	-0.7
2,476,212	-		GFF2454	0.29	+0.0
2,476,241	-		GFF2454	0.32	+0.0
2,476,241	-		GFF2454	0.32	-0.1
2,476,251	-		GFF2454	0.33	+0.4
2,476,251	-		GFF2454	0.33	-0.4
2,476,275	+		GFF2454	0.35	-0.3
2,476,285	+		GFF2454	0.36	-0.2
2,476,304	-		GFF2454	0.38	-0.2
2,476,304	-		GFF2454	0.38	-3.1
2,476,304	-		GFF2454	0.38	-0.3
2,476,320	-		GFF2454	0.39	-0.7
2,476,342	+		GFF2454	0.41	-1.3
2,476,347	+		GFF2454	0.42	-0.2
2,476,355	-		GFF2454	0.42	+0.1
2,476,355	-		GFF2454	0.42	+0.1
2,476,362	-		GFF2454	0.43	-0.2
2,476,378	+		GFF2454	0.45	-0.1
2,476,395	+		GFF2454	0.46	+0.4
2,476,420	-		GFF2454	0.49	-0.3
2,476,422	-		GFF2454	0.49	-0.8
2,476,440	+		GFF2454	0.50	+1.1
2,476,440	+		GFF2454	0.50	+1.4
2,476,440	+		GFF2454	0.50	+0.1
2,476,443	-		GFF2454	0.51	+0.1
2,476,443	-		GFF2454	0.51	-0.3
2,476,448	+		GFF2454	0.51	-0.4
2,476,448	-		GFF2454	0.51	+0.2
2,476,448	-		GFF2454	0.51	-1.2
2,476,448	-		GFF2454	0.51	-0.8
2,476,450	+		GFF2454	0.51	-0.3
2,476,450	+		GFF2454	0.51	+0.6
2,476,458	-		GFF2454	0.52	-0.0
2,476,458	-		GFF2454	0.52	-2.4
2,476,458	-		GFF2454	0.52	+0.2
2,476,458	-		GFF2454	0.52	-1.5
2,476,458	-		GFF2454	0.52	+0.7
2,476,458	-		GFF2454	0.52	-1.6
2,476,458	-		GFF2454	0.52	-2.5
2,476,458	-		GFF2454	0.52	-0.5
2,476,483	-		GFF2454	0.54	-0.1
2,476,488	-		GFF2454	0.55	+0.1
2,476,488	-		GFF2454	0.55	-1.3
2,476,488	-		GFF2454	0.55	-1.1
2,476,489	+		GFF2454	0.55	-1.5
2,476,490	-		GFF2454	0.55	+2.1
2,476,490	-		GFF2454	0.55	+0.5
2,476,494	+		GFF2454	0.55	+0.4
2,476,494	+		GFF2454	0.55	-0.2
2,476,500	+		GFF2454	0.56	-0.8
2,476,502	-		GFF2454	0.56	-0.3
2,476,507	+		GFF2454	0.57	-0.1
2,476,507	+		GFF2454	0.57	+0.8
2,476,507	+		GFF2454	0.57	-0.1
2,476,507	+		GFF2454	0.57	-0.3
2,476,507	+		GFF2454	0.57	+0.3
2,476,507	+		GFF2454	0.57	+0.4
2,476,507	+		GFF2454	0.57	-1.7
2,476,507	+		GFF2454	0.57	+1.1
2,476,507	+		GFF2454	0.57	+0.4
2,476,507	+		GFF2454	0.57	+0.9
2,476,507	+		GFF2454	0.57	-1.0
2,476,507	+		GFF2454	0.57	+0.1
2,476,507	+		GFF2454	0.57	+0.5
2,476,508	-		GFF2454	0.57	-0.3
2,476,515	-		GFF2454	0.57	-1.1
2,476,515	-		GFF2454	0.57	+1.3
2,476,515	-		GFF2454	0.57	-2.3
2,476,515	-		GFF2454	0.57	-2.3
2,476,515	-		GFF2454	0.57	-0.1
2,476,515	-		GFF2454	0.57	+0.5
2,476,515	-		GFF2454	0.57	+0.2
2,476,515	-		GFF2454	0.57	-0.1
2,476,516	-		GFF2454	0.57	+0.5
2,476,526	+		GFF2454	0.58	+0.9
2,476,526	+		GFF2454	0.58	+0.4
2,476,535	+		GFF2454	0.59	+0.9
2,476,535	+		GFF2454	0.59	+0.8
2,476,578	+		GFF2454	0.63	-1.2
2,476,602	+		GFF2454	0.65	+1.5
2,476,610	-		GFF2454	0.66	-0.6
2,476,637	-		GFF2454	0.69	-0.1
2,476,673	+		GFF2454	0.72	+1.2
2,476,696	+		GFF2454	0.74	-0.2
2,476,704	-		GFF2454	0.75	+0.5
2,476,705	-		GFF2454	0.75	-0.3
2,476,705	-		GFF2454	0.75	+0.0
2,476,716	+		GFF2454	0.76	+0.1
2,476,716	+		GFF2454	0.76	-1.7
2,476,716	+		GFF2454	0.76	+0.7
2,476,716	+		GFF2454	0.76	+0.5
2,476,716	+		GFF2454	0.76	+0.1
2,476,716	+		GFF2454	0.76	-0.8
2,476,716	+		GFF2454	0.76	-0.2
2,476,716	+		GFF2454	0.76	-1.4
2,476,723	+		GFF2454	0.77	-1.5
2,476,723	+		GFF2454	0.77	+1.2
2,476,724	-		GFF2454	0.77	-1.1
2,476,724	-		GFF2454	0.77	-1.3
2,476,724	-		GFF2454	0.77	-0.3
2,476,724	-		GFF2454	0.77	-1.2
2,476,724	-		GFF2454	0.77	-0.9
2,476,742	-		GFF2454	0.78	-0.9
2,476,748	+		GFF2454	0.79	+0.9
2,476,748	-		GFF2454	0.79	-1.4
2,476,766	+		GFF2454	0.81	-1.6
2,476,766	+		GFF2454	0.81	-0.8
2,476,766	+		GFF2454	0.81	-2.1
2,476,766	+		GFF2454	0.81	+0.5
2,476,766	+		GFF2454	0.81	+0.6
2,476,766	+		GFF2454	0.81	+0.8
2,476,766	+		GFF2454	0.81	-1.4
2,476,766	+		GFF2454	0.81	-0.4
2,476,766	+		GFF2454	0.81	-1.1
2,476,771	+		GFF2454	0.81	+0.8
2,476,774	-		GFF2454	0.81	+0.5
2,476,774	-		GFF2454	0.81	-1.4
2,476,774	-		GFF2454	0.81	-0.5
2,476,774	-		GFF2454	0.81	+0.2
2,476,774	-		GFF2454	0.81	-1.6
2,476,774	-		GFF2454	0.81	+0.4
2,476,795	-		GFF2454	0.83	-0.6
2,476,799	+		GFF2454	0.84	-0.9
2,476,799	+		GFF2454	0.84	-1.9
2,476,799	+		GFF2454	0.84	+1.0
2,476,799	+		GFF2454	0.84	-1.5
2,476,805	-		GFF2454	0.84	+1.6
2,476,819	+		GFF2454	0.85	+0.3
2,476,820	+		GFF2454	0.86	+0.1
2,476,827	-		GFF2454	0.86	+0.2
2,476,848	-		GFF2454	0.88	-0.3
2,476,886	+				-1.8
2,476,886	+				-0.8
2,476,886	+				+0.2
2,476,886	+				-1.3
2,476,886	+				-1.3
2,476,891	+				-0.5
2,476,891	+				+1.2
2,476,891	+				-0.9
2,476,891	+				+1.1
2,476,899	-				-1.1
2,476,899	-				-1.1
2,476,904	-				-1.4
2,476,945	-				+0.2
2,476,962	+				-0.2
2,476,964	+				-1.0
2,476,964	+				+0.5
2,476,964	+				+0.5
2,476,970	-				-1.5
2,476,991	-				-0.4
2,476,991	-				-0.3
2,476,993	+				+0.4
2,476,994	+				-0.9
2,476,996	-				+0.5
2,477,002	-				+0.7
2,477,003	-				+1.1
2,477,037	-				-2.4
2,477,037	-				+0.3
2,477,041	+				+0.3
2,477,042	-				+0.9
2,477,046	+				+0.8
2,477,046	+				-0.9
2,477,046	+				-1.3
2,477,046	+				+0.9
2,477,046	+				-2.1
2,477,046	+				+0.7
2,477,046	+				-0.3
2,477,046	+				-0.1
2,477,054	-				-1.2
2,477,060	-				-2.1
2,477,097	-		GFF2455	0.11	+0.5
2,477,097	-		GFF2455	0.11	+0.3
2,477,099	-		GFF2455	0.12	-0.1
2,477,122	-		GFF2455	0.14	-0.2
2,477,133	-		GFF2455	0.15	+0.1
2,477,136	+		GFF2455	0.15	-1.7
2,477,144	-		GFF2455	0.16	-1.3
2,477,152	-		GFF2455	0.16	+0.9
2,477,178	-		GFF2455	0.19	-1.1
2,477,186	+		GFF2455	0.19	+0.7
2,477,191	+		GFF2455	0.20	-1.7
2,477,196	+		GFF2455	0.20	-1.4
2,477,199	-		GFF2455	0.21	-0.8
2,477,211	+		GFF2455	0.22	-1.1
2,477,243	+		GFF2455	0.25	-0.4
2,477,243	+		GFF2455	0.25	+0.4
2,477,248	+		GFF2455	0.25	-2.1
2,477,251	-		GFF2455	0.25	-0.9
2,477,256	-		GFF2455	0.26	+0.5
2,477,261	-		GFF2455	0.26	+0.2
2,477,281	-		GFF2455	0.28	-2.1
2,477,282	+		GFF2455	0.28	+1.1
2,477,290	-		GFF2455	0.29	-0.4
2,477,290	-		GFF2455	0.29	+0.2
2,477,307	+		GFF2455	0.30	-0.3
2,477,312	+		GFF2455	0.31	-0.4
2,477,312	+		GFF2455	0.31	+0.3
2,477,312	+		GFF2455	0.31	-2.0
2,477,312	+		GFF2455	0.31	+0.2
2,477,315	-		GFF2455	0.31	+0.8
2,477,321	+		GFF2455	0.32	+0.3
2,477,352	-		GFF2455	0.34	-1.9
2,477,388	+		GFF2455	0.38	-1.5
2,477,388	+		GFF2455	0.38	-0.1
2,477,394	+		GFF2455	0.38	+0.8
2,477,396	-		GFF2455	0.38	-0.4
2,477,402	-		GFF2455	0.39	+0.9
2,477,434	-		GFF2455	0.42	+0.1
2,477,456	+		GFF2455	0.44	+0.6
2,477,466	+		GFF2455	0.45	-0.1
2,477,466	+		GFF2455	0.45	-0.7
2,477,466	+		GFF2455	0.45	-0.1
2,477,466	+		GFF2455	0.45	+0.3
2,477,466	+		GFF2455	0.45	+0.1
2,477,466	+		GFF2455	0.45	+0.5
2,477,466	+		GFF2455	0.45	-0.2
2,477,466	+		GFF2455	0.45	-0.3
2,477,474	-		GFF2455	0.45	+0.8
2,477,474	-		GFF2455	0.45	+0.3
2,477,474	-		GFF2455	0.45	+0.7
2,477,474	-		GFF2455	0.45	-1.1
2,477,509	-		GFF2455	0.49	-0.4
2,477,515	-		GFF2455	0.49	+0.6
2,477,516	-		GFF2455	0.49	-0.0
2,477,519	-		GFF2455	0.50	+0.6
2,477,519	-		GFF2455	0.50	-1.1
2,477,522	+		GFF2455	0.50	-1.0
2,477,526	-		GFF2455	0.50	-0.6
2,477,537	+		GFF2455	0.51	+0.1
2,477,542	+		GFF2455	0.52	-0.5
2,477,547	+		GFF2455	0.52	+1.9
2,477,547	+		GFF2455	0.52	-1.5
2,477,547	+		GFF2455	0.52	-0.5
2,477,547	+		GFF2455	0.52	+0.2
2,477,547	+		GFF2455	0.52	-0.6
2,477,547	+		GFF2455	0.52	+2.2
2,477,547	+		GFF2455	0.52	+1.1
2,477,547	+		GFF2455	0.52	-0.3
2,477,547	+		GFF2455	0.52	-1.5
2,477,547	+		GFF2455	0.52	+1.1
2,477,547	+		GFF2455	0.52	+1.0
2,477,555	-		GFF2455	0.53	+0.8
2,477,555	-		GFF2455	0.53	-0.6
2,477,555	-		GFF2455	0.53	+0.1
2,477,555	-		GFF2455	0.53	-0.2
2,477,555	-		GFF2455	0.53	-0.6
2,477,555	-		GFF2455	0.53	+0.6
2,477,555	-		GFF2455	0.53	+0.3
2,477,565	+		GFF2455	0.54	+0.4
2,477,579	+		GFF2455	0.55	+1.3
2,477,584	+		GFF2455	0.55	-1.1
2,477,584	+		GFF2455	0.55	-0.6
2,477,584	+		GFF2455	0.55	-2.4
2,477,584	+		GFF2455	0.55	+0.3
2,477,589	+		GFF2455	0.56	-0.3
2,477,592	-		GFF2455	0.56	-0.7
2,477,602	-		GFF2455	0.57	+0.6
2,477,610	+		GFF2455	0.58	+0.6
2,477,621	+		GFF2455	0.59	-0.9
2,477,621	+		GFF2455	0.59	+0.1
2,477,629	-		GFF2455	0.60	+0.8
2,477,629	-		GFF2455	0.60	-1.5
2,477,640	+		GFF2455	0.61	+0.8
2,477,656	-		GFF2455	0.62	+0.6
2,477,660	+		GFF2455	0.62	+1.3
2,477,667	-		GFF2455	0.63	-1.0
2,477,702	+		GFF2455	0.66	-1.4
2,477,722	+		GFF2455	0.68	-0.2
2,477,743	+		GFF2455	0.70	+1.0
2,477,744	+		GFF2455	0.70	+0.6
2,477,751	-		GFF2455	0.71	-0.6
2,477,751	-		GFF2455	0.71	-1.6
2,477,757	-		GFF2455	0.71	+1.0
2,477,780	+		GFF2455	0.73	-1.0
2,477,782	+		GFF2455	0.73	+0.1
2,477,784	-		GFF2455	0.74	+1.1
2,477,790	+		GFF2455	0.74	-0.1
2,477,828	-		GFF2455	0.78	+0.6
2,477,828	-		GFF2455	0.78	+0.9
2,477,828	-		GFF2455	0.78	-0.9
2,477,837	-		GFF2455	0.78	-1.7
2,477,857	+		GFF2455	0.80	-0.6
2,477,869	-		GFF2455	0.81	+0.6
2,477,874	-		GFF2455	0.82	-0.5
2,477,897	+		GFF2455	0.84	+0.3
2,477,897	+		GFF2455	0.84	+0.9
2,477,907	+		GFF2455	0.85	+0.1
2,477,922	-		GFF2455	0.86	-0.3
2,477,944	-		GFF2455	0.88	-0.3
2,477,984	+				-0.6
2,477,996	+				-0.1
2,478,001	+				+1.9
2,478,006	+				-1.0
2,478,006	+				+0.6
2,478,006	+				+0.5
2,478,006	+				-2.2
2,478,006	+				-0.5
2,478,006	+				+0.1
2,478,006	+				-0.0
2,478,006	+				-0.3
2,478,006	+				+0.1
2,478,006	+				-2.1
2,478,006	+				-1.5
2,478,006	+				-0.1
2,478,006	+				+0.0
2,478,006	+				-0.0
2,478,006	+				-0.9
2,478,006	+				-1.9
2,478,006	+				+0.1
2,478,006	+				+0.9
2,478,006	+				-1.4
2,478,006	+				+1.2
2,478,006	+				+1.5
2,478,006	+				-0.0
2,478,006	+				-0.6
2,478,006	+				-0.1
2,478,006	+				+0.3
2,478,006	+				-0.6
2,478,006	+				-0.6
2,478,006	+				+1.1
2,478,006	+				+0.3
2,478,006	+				+1.2
2,478,006	+				-0.7
2,478,006	+				+0.6
2,478,006	+				-2.7
2,478,006	+				+1.0
2,478,006	+				-1.3
2,478,009	-				+0.4
2,478,009	-				-0.7
2,478,014	-				+0.6
2,478,014	-				-1.6
2,478,014	-				-0.2
2,478,014	-				+0.3
2,478,014	-				+1.0
2,478,014	-				-1.8
2,478,014	-				-1.0
2,478,014	-				-0.9
2,478,014	-				+0.7
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2,478,014	-				+0.5
2,478,014	-				-0.1
2,478,014	-				+0.3
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2,478,014	-				-1.1
2,478,014	-				-1.8
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2,478,014	-				-0.6
2,478,014	-				+0.1
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2,478,014	-				+0.9
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2,478,014	-				+0.1
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2,478,047	+				+1.1
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2,478,465	+				+0.8
2,478,468	-				+0.3
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2,478,502	+				+0.7
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2,478,511	+				-0.6
2,478,511	+				-0.3
2,478,511	+				-0.6
2,478,519	-				-1.9
2,478,519	-				+0.4
2,478,519	-				-2.0
2,478,519	-				+0.3
2,478,519	-				-2.1
2,478,519	-				+0.1
2,478,519	-				+0.1
2,478,519	-				-1.8
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2,478,519	-				-1.1
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2,478,521	+				+0.7
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2,478,529	-				-0.2
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2,478,546	+				-1.9
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2,478,614	+				+0.7
2,478,614	+				-0.7
2,478,614	+				+0.4
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2,478,622	-				-0.6
2,478,622	-				-0.1
2,478,628	-				-2.2
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2,478,813	+		GFF2457	0.28	+0.4
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