Strain Fitness in Sphingobium sp. HT1-2 around GFF24

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
15,897	+		GFF22	0.85	+1.1
15,897	-		GFF22	0.85	+0.9
15,902	-		GFF22	0.86	+0.8
15,914	-		GFF22	0.86	+0.1
15,925	+		GFF22	0.87	-1.6
15,933	-		GFF22	0.87	+0.8
15,951	-		GFF22	0.88	-0.1
15,960	+		GFF22	0.88	-0.3
15,960	+		GFF22	0.88	-1.2
15,965	+		GFF22	0.88	-1.0
15,968	-		GFF22	0.88	-1.4
15,970	+		GFF22	0.88	+0.1
15,970	+		GFF22	0.88	+0.9
15,970	+		GFF22	0.88	-0.2
15,970	+		GFF22	0.88	+0.5
15,970	+		GFF22	0.88	-2.5
15,975	+		GFF22	0.89	+0.3
15,978	-		GFF22	0.89	+0.8
15,978	-		GFF22	0.89	-0.2
15,978	-		GFF22	0.89	-0.3
15,983	-		GFF22	0.89	+0.0
15,989	+		GFF22	0.89	-0.8
15,989	+		GFF22	0.89	-1.2
15,989	+		GFF22	0.89	-1.3
16,026	-				+0.8
16,037	-				+0.1
16,048	+				+0.4
16,048	+				+0.4
16,048	+				+0.2
16,056	-				-0.6
16,056	-				-0.9
16,056	-				-0.4
16,056	-				+0.6
16,084	+				+0.3
16,087	-				+0.1
16,089	+				+0.5
16,092	-				+0.3
16,092	-				-2.3
16,092	-				-0.7
16,092	-				+1.0
16,092	-				-1.3
16,124	+				-1.2
16,127	-				+1.0
16,141	+				-0.8
16,163	+				+0.5
16,163	+				-1.7
16,170	-				-1.4
16,171	-				-2.4
16,185	-				+0.7
16,187	+				-0.6
16,195	-				+0.4
16,205	+				+0.5
16,211	+				+0.7
16,213	-				+0.3
16,213	-				-0.5
16,213	-				+0.7
16,228	-				-0.6
16,247	-				-0.8
16,259	+				+0.4
16,280	+				-0.7
16,280	+				-1.8
16,288	-				+1.1
16,325	-				-0.6
16,329	+				-2.3
16,337	-		GFF23	0.11	-1.6
16,364	-		GFF23	0.15	-0.0
16,366	+		GFF23	0.16	-1.6
16,386	+		GFF23	0.19	-1.4
16,386	+		GFF23	0.19	+0.6
16,400	+		GFF23	0.21	-0.8
16,405	+		GFF23	0.22	-2.2
16,405	+		GFF23	0.22	+0.2
16,405	+		GFF23	0.22	-0.8
16,405	+		GFF23	0.22	-0.2
16,405	+		GFF23	0.22	-0.4
16,405	+		GFF23	0.22	-0.7
16,406	+		GFF23	0.22	+0.7
16,407	+		GFF23	0.22	-2.2
16,408	-		GFF23	0.23	+0.5
16,408	-		GFF23	0.23	+0.4
16,413	-		GFF23	0.23	-0.9
16,413	-		GFF23	0.23	+0.6
16,413	-		GFF23	0.23	-1.7
16,413	-		GFF23	0.23	-0.8
16,413	-		GFF23	0.23	-0.7
16,413	-		GFF23	0.23	-0.6
16,413	-		GFF23	0.23	-0.9
16,413	-		GFF23	0.23	-1.3
16,426	+		GFF23	0.25	-1.5
16,434	-		GFF23	0.27	-0.4
16,459	+		GFF23	0.31	-2.1
16,459	+		GFF23	0.31	-0.1
16,466	+		GFF23	0.32	-1.4
16,467	-		GFF23	0.32	+1.1
16,467	-		GFF23	0.32	-1.1
16,467	-		GFF23	0.32	-2.1
16,526	-		GFF23	0.42	+0.1
16,532	+		GFF23	0.43	-0.3
16,532	+		GFF23	0.43	-0.3
16,533	+		GFF23	0.43	+0.8
16,540	-		GFF23	0.44	-0.9
16,553	+		GFF23	0.46	+0.2
16,557	+		GFF23	0.47	-1.1
16,561	-		GFF23	0.47	-0.8
16,561	-		GFF23	0.47	-0.4
16,565	-		GFF23	0.48	-0.7
16,565	-		GFF23	0.48	-1.0
16,582	-		GFF23	0.51	-1.6
16,582	-		GFF23	0.51	+0.8
16,582	-		GFF23	0.51	-1.1
16,585	-		GFF23	0.51	+0.5
16,590	-		GFF23	0.52	-1.6
16,598	+		GFF23	0.53	-0.9
16,598	+		GFF23	0.53	+1.3
16,641	+		GFF23	0.60	-0.1
16,649	-		GFF23	0.61	-0.6
16,649	-		GFF23	0.61	-1.9
16,680	-		GFF23	0.66	-2.0
16,693	-		GFF23	0.68	-1.0
16,698	+		GFF23	0.69	+0.7
16,703	+		GFF23	0.70	-0.7
16,706	-		GFF23	0.71	+0.5
16,706	-		GFF23	0.71	+0.1
16,708	+		GFF23	0.71	-1.8
16,708	+		GFF23	0.71	+1.3
16,716	-		GFF23	0.72	-2.1
16,716	-		GFF23	0.72	+0.4
16,719	+		GFF23	0.73	+0.8
16,721	-		GFF23	0.73	-1.8
16,723	+		GFF23	0.73	-1.2
16,724	+		GFF23	0.73	+0.3
16,732	-		GFF23	0.75	-0.2
16,732	-		GFF23	0.75	+1.3
16,794	-		GFF23	0.85	-0.9
16,799	+		GFF23	0.86	-0.9
16,799	+		GFF23	0.86	+0.2
16,799	+		GFF23	0.86	-1.4
16,799	+		GFF23	0.86	-1.5
16,799	+		GFF23	0.86	+0.7
16,799	+		GFF23	0.86	+1.5
16,799	+		GFF23	0.86	+0.4
16,799	+		GFF23	0.86	+0.8
16,806	+		GFF23	0.87	+0.3
16,806	+		GFF23	0.87	-0.4
16,807	-		GFF23	0.87	-0.2
16,807	-		GFF23	0.87	-1.2
16,807	-		GFF23	0.87	-0.6
16,807	-		GFF23	0.87	-1.5
16,807	-		GFF23	0.87	-0.5
16,807	-		GFF23	0.87	-1.4
16,807	-		GFF23	0.87	+1.7
16,807	-		GFF23	0.87	-1.3
16,807	-		GFF23	0.87	+0.4
16,807	-		GFF23	0.87	-1.0
16,807	-		GFF23	0.87	-1.1
16,807	-		GFF23	0.87	-1.1
16,807	-		GFF23	0.87	-1.6
16,807	-		GFF23	0.87	-0.3
16,807	-		GFF23	0.87	-2.0
16,814	-		GFF23	0.88	-0.4
16,814	-		GFF23	0.88	-1.9
16,814	-		GFF23	0.88	-0.4
16,817	-		GFF23	0.88	+0.8
16,868	+				+1.6
16,868	+				-1.7
16,876	-				-0.8
16,890	+				-0.5
16,901	+				-1.4
16,903	+				-1.4
16,903	+				+0.6
16,911	-				-0.1
17,021	+		GFF24	0.21	-1.0
17,035	-		GFF24	0.23	+1.4
17,044	+		GFF24	0.24	-0.8
17,044	+		GFF24	0.24	+0.9
17,044	+		GFF24	0.24	+0.5
17,051	+		GFF24	0.25	-1.4
17,051	+		GFF24	0.25	-2.3
17,051	+		GFF24	0.25	-0.4
17,051	-		GFF24	0.25	-0.3
17,052	-		GFF24	0.26	+0.1
17,059	-		GFF24	0.27	-2.1
17,059	-		GFF24	0.27	+0.4
17,059	-		GFF24	0.27	+0.6
17,059	-		GFF24	0.27	-0.4
17,089	+		GFF24	0.31	-1.3
17,097	-		GFF24	0.32	+0.8
17,114	+		GFF24	0.35	+1.6
17,114	+		GFF24	0.35	-1.2
17,122	-		GFF24	0.36	-0.4
17,122	-		GFF24	0.36	-1.2
17,197	+		GFF24	0.48	+0.3
17,197	+		GFF24	0.48	-0.2
17,230	+		GFF24	0.53	-1.2
17,240	+		GFF24	0.54	+0.4
17,240	+		GFF24	0.54	-3.0
17,240	+		GFF24	0.54	-0.3
17,245	+		GFF24	0.55	+0.8
17,248	-		GFF24	0.56	-0.3
17,253	-		GFF24	0.56	-1.5
17,260	-		GFF24	0.57	-1.5
17,262	+		GFF24	0.58	-3.3
17,294	+		GFF24	0.63	-0.5
17,294	+		GFF24	0.63	-2.4
17,294	+		GFF24	0.63	+0.3
17,303	+		GFF24	0.64	+1.0
17,303	+		GFF24	0.64	-0.8
17,305	+		GFF24	0.64	+0.2
17,311	-		GFF24	0.65	-0.4
17,326	-		GFF24	0.67	+0.4
17,336	+		GFF24	0.69	+0.5
17,336	+		GFF24	0.69	-1.3
17,336	-		GFF24	0.69	-0.7
17,336	-		GFF24	0.69	-0.4
17,336	-		GFF24	0.69	-0.6
17,344	-		GFF24	0.70	-1.1
17,344	-		GFF24	0.70	+0.5
17,344	-		GFF24	0.70	-0.1
17,344	-		GFF24	0.70	+1.1
17,344	-		GFF24	0.70	+0.4
17,356	+		GFF24	0.72	-0.3
17,361	+		GFF24	0.73	-1.3
17,365	+		GFF24	0.73	-0.3
17,368	-		GFF24	0.74	-0.3
17,373	-		GFF24	0.75	-0.3
17,373	-		GFF24	0.75	-1.2
17,373	-		GFF24	0.75	-1.5
17,373	-		GFF24	0.75	+0.5
17,378	+		GFF24	0.75	+0.9
17,378	+		GFF24	0.75	-0.0
17,381	-		GFF24	0.76	-1.5
17,383	+		GFF24	0.76	-0.6
17,386	-		GFF24	0.77	+1.3
17,386	-		GFF24	0.77	-1.6
17,388	+		GFF24	0.77	+0.6
17,396	+		GFF24	0.78	+1.4
17,396	+		GFF24	0.78	-2.4
17,396	-		GFF24	0.78	-1.2
17,404	-		GFF24	0.79	+0.9
17,406	+		GFF24	0.80	+0.2
17,414	-		GFF24	0.81	-0.7
17,414	-		GFF24	0.81	-1.5
17,414	-		GFF24	0.81	+0.5
17,414	-		GFF24	0.81	-1.5
17,436	+		GFF24	0.84	+1.1
17,436	+		GFF24	0.84	-0.8
17,436	+		GFF24	0.84	+0.3
17,438	+		GFF24	0.85	+0.3
17,441	+		GFF24	0.85	-1.3
17,444	-		GFF24	0.85	+0.1
17,446	-		GFF24	0.86	-0.7
17,470	-		GFF24	0.89	-0.0
17,482	+				+0.0
17,517	+				+0.7
17,538	+				-0.2
17,538	+				-2.7
17,546	-				+0.5
17,547	-				-0.0
17,547	-				+0.9
17,547	-				+1.7
17,547	-				-0.1
17,547	-				-0.6
17,554	+				-0.2
17,569	-				-1.3
17,571	+				+0.7
17,579	-				-1.0
17,615	-		GFF25	0.11	-0.6
17,617	+		GFF25	0.11	+1.4
17,617	+		GFF25	0.11	+1.0
17,625	-		GFF25	0.13	+0.7
17,634	+		GFF25	0.15	-2.5
17,641	+		GFF25	0.17	-1.1
17,641	+		GFF25	0.17	-1.1
17,642	-		GFF25	0.17	+0.4
17,643	+		GFF25	0.17	-0.8
17,651	-		GFF25	0.19	+0.8
17,656	+		GFF25	0.20	+0.8
17,656	+		GFF25	0.20	-0.8
17,656	+		GFF25	0.20	-2.0
17,681	-		GFF25	0.25	-0.3
17,713	-		GFF25	0.32	-1.3
17,725	-		GFF25	0.35	-0.3
17,734	+		GFF25	0.37	-0.2
17,743	+		GFF25	0.39	-1.2
17,801	-		GFF25	0.52	-1.8
17,801	-		GFF25	0.52	-1.6
17,803	+		GFF25	0.52	-1.4
17,811	-		GFF25	0.54	+0.1
17,811	-		GFF25	0.54	-0.1
17,845	-		GFF25	0.62	+0.5
17,872	+		GFF25	0.68	+0.1
17,872	+		GFF25	0.68	+0.4
17,872	+		GFF25	0.68	+0.3
17,875	-		GFF25	0.68	-0.4
17,880	-		GFF25	0.69	+1.2
17,885	-		GFF25	0.70	+1.5
17,885	-		GFF25	0.70	-1.9
17,885	-		GFF25	0.70	-0.7
17,918	+		GFF25	0.78	+0.9
17,924	+		GFF25	0.79	+0.1
17,924	+		GFF25	0.79	-1.2
17,924	+		GFF25	0.79	+0.7
17,924	+		GFF25	0.79	-1.2
17,924	+		GFF25	0.79	-0.1
17,924	+		GFF25	0.79	-1.6
17,924	+		GFF25	0.79	-0.3
17,929	+		GFF25	0.80	+0.4
17,932	-		GFF25	0.81	+0.7
17,932	-		GFF25	0.81	-0.5
17,932	-		GFF25	0.81	+1.2
17,932	-		GFF25	0.81	-1.2
17,932	-		GFF25	0.81	-0.3
17,932	-		GFF25	0.81	-0.6
17,934	+		GFF25	0.81	+0.2
17,934	+		GFF25	0.81	-0.1
17,937	-		GFF25	0.82	+1.4
17,937	-		GFF25	0.82	-1.2
17,937	-		GFF25	0.82	-1.4
17,937	-		GFF25	0.82	-1.2
17,937	-		GFF25	0.82	+0.1
17,942	-		GFF25	0.83	-0.7
17,942	-		GFF25	0.83	+0.2
17,942	-		GFF25	0.83	+0.7
17,951	-		GFF25	0.85	+0.5
18,013	+				-0.1
18,013	+				-0.7
18,022	+				+1.6
18,022	+				+0.7
18,030	-				-0.9
18,030	-				+0.2
18,040	-				+0.4
18,041	-				+0.1
18,045	+				-0.8
18,127	-				-1.0
18,128	+				+0.1
18,128	+				+0.4
18,136	-				-0.2
18,158	-				-0.7
18,165	+				-0.4
18,165	+				-0.8
18,165	+				+0.7
18,170	+				+0.9
18,173	-				-0.4
18,173	-				+0.8
18,173	-				-0.7
18,173	-				-0.1
18,173	-				-1.2
18,173	-				-1.0
18,181	+				-2.4
18,189	-				-0.3
18,198	+				+1.5
18,198	+				-0.7
18,198	+				-0.7
18,203	+				-0.6
18,206	-				+0.4
18,208	+				+0.2
18,208	+				+0.7
18,208	+				+0.3
18,211	-				-0.6
18,225	-				-2.2
18,238	+				+0.2
18,246	-				+0.6
18,256	-				-1.4
18,256	-				-0.1
18,258	+				+0.8
18,261	-				+0.5
18,261	-				-0.4
18,261	-				-0.2
18,266	-				-0.7
18,271	-				-0.3
18,275	+				-1.4
18,295	-				+0.3
18,309	+				-1.6
18,309	+				+1.4
18,309	+				+0.3
18,309	+				-1.0
18,309	+				+0.2
18,309	+				-0.4
18,314	+				-1.5
18,314	+				-1.5
18,317	-				-1.3
18,322	-				+0.6
18,363	+				-1.6
18,363	+				+0.8
18,371	-				-0.1
18,392	+				+1.0
18,405	-				-1.9
18,415	-				-0.9
18,420	+				-2.3
18,428	-				+0.9
18,428	-				+1.2
18,430	+				-1.2
18,431	+				-1.5
18,436	+				+0.4
18,438	-				-0.2
18,438	-				-0.7
18,450	-				+0.4
18,488	+				+0.4
18,488	+				-0.0
18,488	+				-0.3
18,488	+				-1.1
18,488	+				-0.3
18,488	+				-1.4
18,488	+				-1.2
18,488	+				-2.5
18,488	+				-0.3
18,488	+				-1.2
18,493	+				-0.4
18,496	-				+0.2
18,496	-				-1.6
18,496	-				-0.3
18,496	-				+0.6
18,496	-				+0.4
18,496	-				+1.1
18,496	-				+0.3
18,496	-				-1.5
18,496	-				-0.4
18,496	-				-1.0
18,496	-				+0.3
18,496	-				-2.2
18,496	-				-0.1
18,496	-				-0.3
18,496	-				-0.5
18,496	-				-1.7
18,496	-				-0.6
18,496	-				+0.7
18,496	-				-0.9