Strain Fitness in Sphingobium sp. HT1-2 around GFF2222

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,240,669	-		GFF2221	0.75	+0.4
2,240,782	+		GFF2221	0.78	+0.2
2,240,786	-		GFF2221	0.78	+0.1
2,240,786	-		GFF2221	0.78	+0.4
2,240,857	-		GFF2221	0.80	-2.9
2,240,891	+		GFF2221	0.81	+0.3
2,240,891	+		GFF2221	0.81	+1.2
2,240,891	+		GFF2221	0.81	-1.5
2,240,940	+		GFF2221	0.83	-1.1
2,240,948	-		GFF2221	0.83	-0.6
2,240,976	-		GFF2221	0.84	-0.3
2,241,056	-		GFF2221	0.86	+1.0
2,241,123	+		GFF2221	0.88	-1.0
2,241,131	+		GFF2221	0.88	-0.8
2,241,131	+		GFF2221	0.88	+0.6
2,241,157	-		GFF2221	0.89	-0.7
2,241,199	+		GFF2221	0.90	+0.6
2,241,204	+		GFF2221	0.90	-0.2
2,241,282	-				+2.0
2,241,313	+				-0.3
2,241,313	+				-0.8
2,241,313	+				+0.2
2,241,323	-				+0.1
2,241,323	-				+0.4
2,241,391	-				-1.5
2,241,404	+				-1.2
2,241,428	+				-0.3
2,241,441	-				-0.3
2,241,441	-				-2.0
2,241,546	-				-1.7
2,241,562	-				-1.2
2,241,573	+				-0.7
2,241,582	-				+0.1
2,241,731	+		GFF2222	0.13	-1.2
2,241,731	+		GFF2222	0.13	-1.4
2,241,731	+		GFF2222	0.13	-1.6
2,241,731	+		GFF2222	0.13	+0.3
2,241,731	+		GFF2222	0.13	-2.6
2,241,731	+		GFF2222	0.13	-1.5
2,241,731	+		GFF2222	0.13	-1.3
2,241,731	+		GFF2222	0.13	-0.5
2,241,731	+		GFF2222	0.13	-0.7
2,241,739	-		GFF2222	0.14	+1.2
2,241,739	-		GFF2222	0.14	+0.2
2,241,739	-		GFF2222	0.14	-1.3
2,241,739	-		GFF2222	0.14	-0.4
2,241,739	-		GFF2222	0.14	+0.7
2,241,739	-		GFF2222	0.14	-1.7
2,241,739	-		GFF2222	0.14	+0.3
2,241,739	-		GFF2222	0.14	+0.1
2,241,739	-		GFF2222	0.14	-0.2
2,241,739	-		GFF2222	0.14	-0.4
2,241,750	+		GFF2222	0.17	+0.1
2,241,750	+		GFF2222	0.17	-0.3
2,241,750	+		GFF2222	0.17	-1.3
2,241,758	-		GFF2222	0.18	-2.9
2,241,772	+		GFF2222	0.21	-1.7
2,241,772	+		GFF2222	0.21	+0.3
2,241,780	-		GFF2222	0.23	-0.4
2,241,780	-		GFF2222	0.23	+0.1
2,241,780	-		GFF2222	0.23	-1.0
2,241,780	-		GFF2222	0.23	+0.4
2,241,782	+		GFF2222	0.23	-1.0
2,241,782	+		GFF2222	0.23	-1.9
2,241,782	+		GFF2222	0.23	-0.3
2,241,782	+		GFF2222	0.23	-1.4
2,241,782	+		GFF2222	0.23	-1.2
2,241,782	+		GFF2222	0.23	-2.0
2,241,782	+		GFF2222	0.23	-1.0
2,241,782	+		GFF2222	0.23	-1.4
2,241,782	+		GFF2222	0.23	-1.5
2,241,790	-		GFF2222	0.25	+0.9
2,241,790	-		GFF2222	0.25	-1.2
2,241,790	-		GFF2222	0.25	+1.0
2,241,790	-		GFF2222	0.25	+1.1
2,241,790	-		GFF2222	0.25	+0.3
2,241,790	-		GFF2222	0.25	+0.5
2,241,790	-		GFF2222	0.25	-0.4
2,241,790	-		GFF2222	0.25	-1.5
2,241,790	-		GFF2222	0.25	-0.2
2,241,790	-		GFF2222	0.25	-1.8
2,241,790	-		GFF2222	0.25	-0.8
2,241,790	-		GFF2222	0.25	+0.7
2,241,790	-		GFF2222	0.25	-0.8
2,241,790	-		GFF2222	0.25	+0.9
2,241,824	-		GFF2222	0.32	-1.5
2,241,869	+		GFF2222	0.41	-0.9
2,241,869	+		GFF2222	0.41	-1.3
2,241,869	+		GFF2222	0.41	-2.2
2,241,898	+		GFF2222	0.47	+0.7
2,241,898	+		GFF2222	0.47	+1.1
2,241,905	+		GFF2222	0.49	-1.5
2,241,913	-		GFF2222	0.50	+0.4
2,241,920	+		GFF2222	0.52	+0.8
2,241,969	-		GFF2222	0.62	+1.0
2,242,042	+		GFF2222	0.77	+0.2
2,242,066	+		GFF2222	0.82	-0.0
2,242,074	-		GFF2222	0.83	+0.4
2,242,076	+		GFF2222	0.84	+0.8
2,242,076	+		GFF2222	0.84	-0.0
2,242,084	-		GFF2222	0.85	-0.3
2,242,084	-		GFF2222	0.85	-0.5
2,242,084	-		GFF2222	0.85	-0.5
2,242,084	-		GFF2222	0.85	-0.1
2,242,107	+				-0.7
2,242,127	-				+0.2
2,242,185	-		GFF2223	0.17	-0.6
2,242,200	-		GFF2223	0.24	+0.2
2,242,200	-		GFF2223	0.24	-0.5
2,242,200	-		GFF2223	0.24	-0.4
2,242,200	-		GFF2223	0.24	-0.1
2,242,205	-		GFF2223	0.26	+0.5
2,242,212	+		GFF2223	0.30	+0.5
2,242,255	-		GFF2223	0.51	-0.4
2,242,270	+		GFF2223	0.58	-0.6
2,242,293	+		GFF2223	0.70	+0.6
2,242,303	-		GFF2223	0.75	+0.6
2,242,308	-		GFF2223	0.77	-0.0
2,242,311	+		GFF2223	0.78	-0.1
2,242,313	-		GFF2223	0.79	-0.7
2,242,319	-		GFF2223	0.82	-0.9
2,242,319	-		GFF2223	0.82	+0.7
2,242,324	-		GFF2223	0.85	-1.6
2,242,324	-		GFF2223	0.85	+0.0
2,242,356	+				-1.8
2,242,365	+				-0.8
2,242,420	+				-0.6
2,242,420	+				-0.1
2,242,426	-				-0.4
2,242,426	-				-2.7
2,242,428	-				-0.6
2,242,428	-				-0.1
2,242,464	-				-0.9
2,242,488	+				-0.2
2,242,509	+				+0.7
2,242,517	-				+0.8
2,242,527	-				-1.5
2,242,551	-				-1.2
2,242,605	+		GFF2224	0.14	-0.4
2,242,605	+		GFF2224	0.14	-1.3
2,242,613	-		GFF2224	0.15	-0.6
2,242,627	+		GFF2224	0.16	+1.7
2,242,627	+		GFF2224	0.16	-0.5
2,242,635	-		GFF2224	0.17	+0.3
2,242,639	-		GFF2224	0.17	+0.6
2,242,658	-		GFF2224	0.18	-1.2
2,242,664	+		GFF2224	0.19	-1.6
2,242,671	+		GFF2224	0.20	+0.5
2,242,671	+		GFF2224	0.20	-0.6
2,242,673	+		GFF2224	0.20	-1.0
2,242,679	-		GFF2224	0.20	-0.4
2,242,679	-		GFF2224	0.20	-0.5
2,242,679	-		GFF2224	0.20	-0.5
2,242,679	-		GFF2224	0.20	+2.0
2,242,679	-		GFF2224	0.20	+0.3
2,242,694	+		GFF2224	0.21	+1.9
2,242,695	-		GFF2224	0.21	-1.1
2,242,702	-		GFF2224	0.22	-0.0
2,242,702	-		GFF2224	0.22	-1.0
2,242,702	-		GFF2224	0.22	+0.4
2,242,706	-		GFF2224	0.22	-0.6
2,242,709	+		GFF2224	0.23	-2.2
2,242,752	+		GFF2224	0.26	+0.9
2,242,756	+		GFF2224	0.26	-1.6
2,242,756	+		GFF2224	0.26	+0.7
2,242,756	+		GFF2224	0.26	-0.5
2,242,777	+		GFF2224	0.28	+0.1
2,242,782	+		GFF2224	0.29	-0.6
2,242,785	-		GFF2224	0.29	+0.4
2,242,785	-		GFF2224	0.29	-1.3
2,242,814	+		GFF2224	0.31	+0.0
2,242,822	+		GFF2224	0.32	+0.1
2,242,832	+		GFF2224	0.33	+1.3
2,242,840	-		GFF2224	0.33	+0.2
2,242,840	-		GFF2224	0.33	+0.2
2,242,840	-		GFF2224	0.33	+0.8
2,242,854	-		GFF2224	0.34	-2.7
2,242,857	+		GFF2224	0.35	-0.6
2,242,857	+		GFF2224	0.35	-0.5
2,242,857	+		GFF2224	0.35	-0.0
2,242,857	+		GFF2224	0.35	+0.0
2,242,857	+		GFF2224	0.35	+0.8
2,242,865	+		GFF2224	0.35	+0.4
2,242,865	-		GFF2224	0.35	+0.4
2,242,865	-		GFF2224	0.35	+0.8
2,242,865	-		GFF2224	0.35	-0.3
2,242,865	-		GFF2224	0.35	+0.6
2,242,865	-		GFF2224	0.35	+0.6
2,242,865	-		GFF2224	0.35	-1.4
2,242,865	-		GFF2224	0.35	-1.2
2,242,865	-		GFF2224	0.35	+0.6
2,242,865	-		GFF2224	0.35	-1.6
2,242,865	-		GFF2224	0.35	+0.2
2,242,865	-		GFF2224	0.35	-0.2
2,242,865	-		GFF2224	0.35	-0.4
2,242,876	+		GFF2224	0.36	-1.8
2,242,881	+		GFF2224	0.37	+0.4
2,242,884	-		GFF2224	0.37	-0.6
2,242,884	-		GFF2224	0.37	-0.1
2,242,884	-		GFF2224	0.37	-0.3
2,242,884	-		GFF2224	0.37	+0.8
2,242,884	-		GFF2224	0.37	-1.4
2,242,889	+		GFF2224	0.37	-0.6
2,242,895	+		GFF2224	0.38	-0.6
2,242,920	+		GFF2224	0.40	-1.7
2,242,932	+		GFF2224	0.41	-2.2
2,242,993	-		GFF2224	0.46	+0.3
2,242,999	+		GFF2224	0.46	-0.8
2,243,007	-		GFF2224	0.47	-0.2
2,243,008	+		GFF2224	0.47	-1.6
2,243,022	+		GFF2224	0.48	-0.7
2,243,041	+		GFF2224	0.50	+1.0
2,243,067	+		GFF2224	0.52	-1.9
2,243,085	+		GFF2224	0.53	-0.7
2,243,085	+		GFF2224	0.53	-0.4
2,243,093	-		GFF2224	0.54	-0.6
2,243,093	-		GFF2224	0.54	-0.5
2,243,093	-		GFF2224	0.54	-0.0