Strain Fitness in Sphingobium sp. HT1-2 around GFF2181

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,196,356	+		GFF2180	0.42	-1.5
2,196,381	-		GFF2180	0.43	-2.0
2,196,383	+		GFF2180	0.43	+0.6
2,196,391	-		GFF2180	0.44	+0.4
2,196,394	+		GFF2180	0.44	-0.1
2,196,399	+		GFF2180	0.44	-0.2
2,196,409	+		GFF2180	0.45	+1.0
2,196,409	+		GFF2180	0.45	-2.5
2,196,417	-		GFF2180	0.45	-2.0
2,196,418	+		GFF2180	0.45	+0.9
2,196,431	+		GFF2180	0.46	-0.6
2,196,431	+		GFF2180	0.46	+0.5
2,196,431	-		GFF2180	0.46	-0.8
2,196,439	-		GFF2180	0.47	-0.2
2,196,445	+		GFF2180	0.47	-1.1
2,196,458	-		GFF2180	0.48	-0.1
2,196,458	-		GFF2180	0.48	+1.3
2,196,460	+		GFF2180	0.48	-0.3
2,196,463	-		GFF2180	0.48	+2.2
2,196,468	-		GFF2180	0.48	+0.2
2,196,486	+		GFF2180	0.50	-0.9
2,196,546	-		GFF2180	0.53	+0.7
2,196,549	+		GFF2180	0.53	+0.4
2,196,556	+		GFF2180	0.54	-2.8
2,196,578	+		GFF2180	0.55	-1.1
2,196,586	-		GFF2180	0.56	-0.7
2,196,589	+		GFF2180	0.56	-2.5
2,196,589	+		GFF2180	0.56	-1.4
2,196,589	+		GFF2180	0.56	-1.2
2,196,589	+		GFF2180	0.56	+0.8
2,196,597	-		GFF2180	0.56	-1.9
2,196,597	-		GFF2180	0.56	-0.5
2,196,597	-		GFF2180	0.56	+0.2
2,196,597	-		GFF2180	0.56	+0.9
2,196,619	-		GFF2180	0.58	-0.3
2,196,644	+		GFF2180	0.59	-0.1
2,196,652	-		GFF2180	0.60	+0.9
2,196,682	+		GFF2180	0.61	+0.5
2,196,711	-		GFF2180	0.63	-1.2
2,196,737	+		GFF2180	0.65	-0.4
2,196,737	+		GFF2180	0.65	-0.8
2,196,737	-		GFF2180	0.65	+0.5
2,196,737	-		GFF2180	0.65	+0.8
2,196,737	-		GFF2180	0.65	-1.8
2,196,742	+		GFF2180	0.65	+0.1
2,196,745	-		GFF2180	0.65	-0.2
2,196,745	-		GFF2180	0.65	+0.9
2,196,750	-		GFF2180	0.66	+0.2
2,196,755	-		GFF2180	0.66	+0.1
2,196,755	-		GFF2180	0.66	-2.4
2,196,760	-		GFF2180	0.66	-0.4
2,196,760	-		GFF2180	0.66	+0.9
2,196,760	-		GFF2180	0.66	-0.5
2,196,760	-		GFF2180	0.66	-0.8
2,196,766	+		GFF2180	0.66	-0.1
2,196,770	+		GFF2180	0.67	-0.6
2,196,788	+		GFF2180	0.68	+0.7
2,196,788	-		GFF2180	0.68	-1.0
2,196,796	-		GFF2180	0.68	+0.8
2,196,822	-		GFF2180	0.70	-0.4
2,196,822	-		GFF2180	0.70	-1.4
2,196,834	-		GFF2180	0.71	-2.6
2,196,865	+		GFF2180	0.72	-1.0
2,196,865	+		GFF2180	0.72	-0.4
2,196,914	+		GFF2180	0.75	-2.2
2,196,916	+		GFF2180	0.76	+0.3
2,196,935	+		GFF2180	0.77	+0.1
2,196,935	+		GFF2180	0.77	-0.9
2,196,935	+		GFF2180	0.77	-0.7
2,196,943	-		GFF2180	0.77	-1.2
2,196,943	-		GFF2180	0.77	-0.5
2,196,943	-		GFF2180	0.77	+0.2
2,196,943	-		GFF2180	0.77	-0.1
2,196,962	+		GFF2180	0.78	-0.3
2,196,962	+		GFF2180	0.78	-2.1
2,196,970	-		GFF2180	0.79	-0.9
2,197,006	+		GFF2180	0.81	-1.9
2,197,009	-		GFF2180	0.81	-0.3
2,197,012	+		GFF2180	0.81	-0.0
2,197,012	+		GFF2180	0.81	+1.0
2,197,012	+		GFF2180	0.81	+0.8
2,197,012	+		GFF2180	0.81	-0.4
2,197,016	+		GFF2180	0.82	-0.2
2,197,016	+		GFF2180	0.82	-0.2
2,197,020	-		GFF2180	0.82	-1.9
2,197,020	-		GFF2180	0.82	+0.1
2,197,024	-		GFF2180	0.82	+0.8
2,197,024	-		GFF2180	0.82	+0.6
2,197,085	+		GFF2180	0.86	-1.9
2,197,085	+		GFF2180	0.86	-0.8
2,197,085	+		GFF2180	0.86	-1.7
2,197,085	+		GFF2180	0.86	-0.4
2,197,085	+		GFF2180	0.86	-2.8
2,197,085	+		GFF2180	0.86	+0.0
2,197,093	-		GFF2180	0.86	+0.5
2,197,093	-		GFF2180	0.86	-0.0
2,197,093	-		GFF2180	0.86	+0.8
2,197,093	-		GFF2180	0.86	-1.4
2,197,139	-		GFF2180	0.89	-1.6
2,197,144	-		GFF2180	0.89	-0.0
2,197,144	-		GFF2180	0.89	-0.1
2,197,145	+		GFF2180	0.89	+0.2
2,197,155	+				+0.7
2,197,155	+				-0.5
2,197,199	+				-0.3
2,197,208	+				+1.3
2,197,208	+				-0.7
2,197,208	+				-0.5
2,197,215	+				-2.2
2,197,216	-				+0.6
2,197,216	-				-0.2
2,197,231	+				+0.4
2,197,233	+				+0.2
2,197,233	+				-0.5
2,197,233	+				+0.2
2,197,233	+				-0.2
2,197,233	+				-1.2
2,197,233	+				-0.7
2,197,233	+				-0.8
2,197,233	+				-0.1
2,197,233	+				-0.5
2,197,233	+				+0.2
2,197,233	+				+0.5
2,197,233	+				+0.6
2,197,241	-				-1.4
2,197,241	-				-0.2
2,197,241	-				-0.9
2,197,241	-				-0.5
2,197,241	-				-0.1
2,197,241	-				+0.1
2,197,285	-				-1.3
2,197,307	+				-1.6
2,197,350	-				-1.4
2,197,367	+				-0.2
2,197,367	+				+0.1
2,197,375	-				-0.4
2,197,400	+				+0.2
2,197,407	+				-0.3
2,197,408	-				+2.0
2,197,408	-				+0.2
2,197,421	+				-0.7
2,197,444	-				-1.1
2,197,471	+				-1.2
2,197,490	+				+0.3
2,197,527	+		GFF2181	0.12	-0.9
2,197,532	+		GFF2181	0.12	+2.0
2,197,532	+		GFF2181	0.12	+0.8
2,197,532	+		GFF2181	0.12	+0.3
2,197,532	+		GFF2181	0.12	-0.6
2,197,532	+		GFF2181	0.12	+0.3
2,197,532	+		GFF2181	0.12	-0.5
2,197,532	+		GFF2181	0.12	+0.9
2,197,532	+		GFF2181	0.12	-0.3
2,197,532	+		GFF2181	0.12	+1.0
2,197,532	+		GFF2181	0.12	-1.5
2,197,532	+		GFF2181	0.12	+0.5
2,197,532	+		GFF2181	0.12	+0.3
2,197,532	+		GFF2181	0.12	-0.2
2,197,532	+		GFF2181	0.12	-1.6
2,197,535	-		GFF2181	0.12	-0.6
2,197,540	-		GFF2181	0.12	-0.4
2,197,540	-		GFF2181	0.12	-1.9
2,197,540	-		GFF2181	0.12	-0.2
2,197,540	-		GFF2181	0.12	+0.5
2,197,540	-		GFF2181	0.12	-0.6
2,197,540	-		GFF2181	0.12	-0.3
2,197,540	-		GFF2181	0.12	+1.2
2,197,540	-		GFF2181	0.12	+0.1
2,197,540	-		GFF2181	0.12	-1.8
2,197,540	-		GFF2181	0.12	-1.0
2,197,540	-		GFF2181	0.12	-0.9
2,197,541	-		GFF2181	0.12	+0.5
2,197,564	+		GFF2181	0.14	+0.2
2,197,564	+		GFF2181	0.14	-0.2
2,197,572	-		GFF2181	0.14	+0.2
2,197,572	-		GFF2181	0.14	-0.3
2,197,572	-		GFF2181	0.14	+0.6
2,197,572	-		GFF2181	0.14	-0.2
2,197,577	-		GFF2181	0.15	-0.0
2,197,577	-		GFF2181	0.15	+0.3
2,197,577	-		GFF2181	0.15	-0.2
2,197,624	+		GFF2181	0.17	-1.1
2,197,624	+		GFF2181	0.17	-0.7
2,197,632	-		GFF2181	0.18	-2.2
2,197,632	-		GFF2181	0.18	-0.6
2,197,632	-		GFF2181	0.18	-0.9
2,197,639	+		GFF2181	0.18	-0.8
2,197,639	+		GFF2181	0.18	-1.3
2,197,639	+		GFF2181	0.18	-0.9
2,197,644	+		GFF2181	0.19	-0.5
2,197,644	+		GFF2181	0.19	-1.2
2,197,644	+		GFF2181	0.19	+0.3
2,197,644	+		GFF2181	0.19	+0.8
2,197,644	+		GFF2181	0.19	+0.1
2,197,644	+		GFF2181	0.19	+0.1
2,197,652	-		GFF2181	0.19	-1.1
2,197,652	-		GFF2181	0.19	-0.5
2,197,652	-		GFF2181	0.19	-0.3
2,197,652	-		GFF2181	0.19	-0.9
2,197,665	-		GFF2181	0.20	+0.7
2,197,679	+		GFF2181	0.21	-0.0
2,197,691	-		GFF2181	0.21	+0.7
2,197,736	-		GFF2181	0.24	+0.4
2,197,738	+		GFF2181	0.24	+1.1
2,197,741	-		GFF2181	0.25	-0.6
2,197,746	-		GFF2181	0.25	-1.2
2,197,753	-		GFF2181	0.25	-0.2
2,197,785	+		GFF2181	0.27	-0.3
2,197,787	+		GFF2181	0.27	-2.3
2,197,790	+		GFF2181	0.27	-1.2
2,197,793	-		GFF2181	0.28	-1.2
2,197,793	-		GFF2181	0.28	-0.8
2,197,793	-		GFF2181	0.28	-0.6
2,197,793	-		GFF2181	0.28	+0.0
2,197,793	-		GFF2181	0.28	-1.9
2,197,793	-		GFF2181	0.28	-0.8
2,197,807	+		GFF2181	0.29	-0.0
2,197,807	+		GFF2181	0.29	+1.9
2,197,815	-		GFF2181	0.29	-0.9
2,197,825	-		GFF2181	0.30	-0.9
2,197,843	+		GFF2181	0.31	+0.8
2,197,843	+		GFF2181	0.31	-0.8
2,197,851	-		GFF2181	0.31	-1.2
2,197,853	+		GFF2181	0.31	+1.4
2,197,889	+		GFF2181	0.33	-1.2
2,197,954	+		GFF2181	0.37	-1.0
2,197,954	+		GFF2181	0.37	+1.1
2,197,962	-		GFF2181	0.38	+0.3
2,197,968	-		GFF2181	0.38	-0.5
2,197,969	+		GFF2181	0.38	-1.2
2,197,975	-		GFF2181	0.39	-1.1
2,197,979	+		GFF2181	0.39	+0.5
2,197,996	+		GFF2181	0.40	+0.4
2,198,001	+		GFF2181	0.40	-0.7
2,198,012	-		GFF2181	0.41	-0.2
2,198,022	+		GFF2181	0.41	+0.3
2,198,030	+		GFF2181	0.42	-0.4
2,198,032	+		GFF2181	0.42	+0.2
2,198,039	-		GFF2181	0.43	+1.0
2,198,069	+		GFF2181	0.44	-0.3
2,198,077	-		GFF2181	0.45	-0.0
2,198,093	+		GFF2181	0.46	-0.4
2,198,098	+		GFF2181	0.46	-0.5
2,198,101	-		GFF2181	0.46	+0.3
2,198,108	+		GFF2181	0.47	+0.7
2,198,119	+		GFF2181	0.47	+0.6
2,198,127	-		GFF2181	0.48	-1.9
2,198,127	-		GFF2181	0.48	-1.0
2,198,137	+		GFF2181	0.48	+0.2
2,198,137	+		GFF2181	0.48	+0.7
2,198,142	+		GFF2181	0.49	-1.0
2,198,142	+		GFF2181	0.49	-1.8
2,198,145	-		GFF2181	0.49	-0.4
2,198,145	-		GFF2181	0.49	-1.6
2,198,145	-		GFF2181	0.49	+0.2
2,198,145	-		GFF2181	0.49	+0.1
2,198,147	+		GFF2181	0.49	+0.7
2,198,147	+		GFF2181	0.49	+0.3
2,198,150	-		GFF2181	0.49	+0.3
2,198,152	+		GFF2181	0.49	-0.4
2,198,155	-		GFF2181	0.50	+0.5
2,198,155	-		GFF2181	0.50	+1.4
2,198,155	-		GFF2181	0.50	+0.2
2,198,159	+		GFF2181	0.50	+1.3
2,198,174	+		GFF2181	0.51	-1.2
2,198,177	-		GFF2181	0.51	-0.5
2,198,182	-		GFF2181	0.51	+0.1
2,198,190	+		GFF2181	0.52	+0.3
2,198,190	+		GFF2181	0.52	-0.8
2,198,190	+		GFF2181	0.52	+0.1
2,198,198	-		GFF2181	0.52	-0.5
2,198,207	+		GFF2181	0.53	+1.5
2,198,207	+		GFF2181	0.53	+1.1
2,198,215	+		GFF2181	0.53	+0.5
2,198,223	-		GFF2181	0.54	+0.7
2,198,223	-		GFF2181	0.54	+0.9
2,198,234	+		GFF2181	0.54	-0.9
2,198,242	-		GFF2181	0.55	-0.0
2,198,245	-		GFF2181	0.55	-0.5
2,198,271	+		GFF2181	0.57	+0.1
2,198,274	-		GFF2181	0.57	-0.4
2,198,294	+		GFF2181	0.58	+0.6
2,198,294	+		GFF2181	0.58	-0.6
2,198,297	-		GFF2181	0.58	-3.1
2,198,305	+		GFF2181	0.59	-1.9
2,198,311	+		GFF2181	0.59	+1.8
2,198,324	-		GFF2181	0.60	-1.0
2,198,324	-		GFF2181	0.60	+0.6
2,198,324	-		GFF2181	0.60	-0.4
2,198,350	-		GFF2181	0.61	-2.3
2,198,355	+		GFF2181	0.62	+0.3
2,198,355	+		GFF2181	0.62	-2.1
2,198,355	-		GFF2181	0.62	-0.3
2,198,363	-		GFF2181	0.62	+1.2
2,198,376	+		GFF2181	0.63	-1.3
2,198,405	-		GFF2181	0.65	+0.0
2,198,418	-		GFF2181	0.65	-0.4
2,198,429	-		GFF2181	0.66	-0.2
2,198,449	-		GFF2181	0.67	-1.8
2,198,453	+		GFF2181	0.68	+0.1
2,198,459	+		GFF2181	0.68	-0.9
2,198,459	+		GFF2181	0.68	-0.2
2,198,459	+		GFF2181	0.68	-0.0
2,198,467	-		GFF2181	0.68	-0.2
2,198,467	-		GFF2181	0.68	-0.2
2,198,469	-		GFF2181	0.68	-2.2
2,198,488	-		GFF2181	0.70	+0.6
2,198,494	+		GFF2181	0.70	+0.2
2,198,499	+		GFF2181	0.70	+0.1
2,198,499	+		GFF2181	0.70	+0.4
2,198,512	+		GFF2181	0.71	-0.0
2,198,512	+		GFF2181	0.71	-1.1
2,198,528	-		GFF2181	0.72	+0.7
2,198,544	+		GFF2181	0.73	+0.6
2,198,552	-		GFF2181	0.73	+0.3
2,198,554	+		GFF2181	0.74	-0.5
2,198,562	-		GFF2181	0.74	-0.5
2,198,562	-		GFF2181	0.74	-0.1
2,198,567	-		GFF2181	0.74	+0.4
2,198,567	-		GFF2181	0.74	+0.2
2,198,567	-		GFF2181	0.74	-0.7
2,198,589	+		GFF2181	0.76	-1.2
2,198,601	+		GFF2181	0.76	+1.0
2,198,601	+		GFF2181	0.76	+0.7
2,198,601	+		GFF2181	0.76	+0.4
2,198,606	+		GFF2181	0.77	-0.7
2,198,629	-		GFF2181	0.78	-0.0
2,198,644	-		GFF2181	0.79	+0.2
2,198,696	-		GFF2181	0.82	+0.2
2,198,701	+		GFF2181	0.82	-2.0
2,198,717	-		GFF2181	0.83	-1.3
2,198,749	+		GFF2181	0.85	+1.0
2,198,749	+		GFF2181	0.85	-0.9
2,198,749	+		GFF2181	0.85	+1.0
2,198,801	+		GFF2181	0.89	-1.1
2,198,863	-				-2.6
2,198,872	+				-0.3
2,198,875	-				-1.6
2,198,875	-				+1.0
2,198,891	+				-0.7
2,198,914	+				+0.3
2,198,914	+				-1.6
2,198,914	+				-1.4
2,198,914	+				-0.6
2,198,914	+				-0.8
2,198,914	+				-1.8
2,198,914	+				+1.4
2,198,914	+				-2.9
2,198,914	+				-0.4
2,198,914	+				-0.5
2,198,922	-				-0.6
2,198,922	-				-0.5
2,198,922	-				+0.3
2,198,922	-				+0.1
2,198,922	-				+1.1
2,198,922	-				-0.4
2,198,922	-				+1.0
2,198,922	-				-1.9
2,198,943	-				-0.0
2,198,944	+				-2.3
2,198,952	-				-1.3
2,198,957	-				-0.7
2,198,969	+				+0.3
2,198,997	-				+0.8
2,198,999	-				+0.4
2,199,000	+				-0.1
2,199,000	+				-0.5
2,199,008	-				+0.6
2,199,018	+				-0.1
2,199,026	-				-0.9
2,199,034	-				+0.2
2,199,034	-				-0.7
2,199,047	+				-0.6
2,199,047	+				-2.4
2,199,047	+				-0.2
2,199,055	-				+1.8
2,199,072	+				-1.5
2,199,072	+				+1.3
2,199,072	+				-0.6
2,199,072	+				+1.0
2,199,072	+				-0.5
2,199,080	-				-0.1
2,199,080	-				-0.9
2,199,080	-				-1.9
2,199,080	-				+0.1
2,199,085	+				+0.9
2,199,085	+				+0.4
2,199,093	-				-0.6
2,199,094	+				-0.3
2,199,133	-				+0.3
2,199,135	-				+1.0
2,199,164	+				-1.4
2,199,188	+				-0.7
2,199,193	-				-2.6
2,199,205	+				+0.1
2,199,205	+				+0.4
2,199,213	-				-0.6
2,199,246	+				+0.1
2,199,246	+				-0.4
2,199,254	-				+0.6
2,199,265	+				-0.9
2,199,273	+				+0.5
2,199,274	+				+0.4
2,199,282	+				-0.2
2,199,285	-				-0.6
2,199,304	+				+1.2
2,199,306	+				+0.5
2,199,306	+				+1.1
2,199,306	+				+0.3
2,199,312	-				-1.2
2,199,314	-				+0.5
2,199,325	+				+0.2
2,199,325	+				-2.7
2,199,327	+				+0.3
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2,199,333	+				+0.8
2,199,351	-				+0.9
2,199,371	-				-1.9
2,199,381	-				-0.3
2,199,437	-		GFF2182	0.12	-1.2
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2,199,738	-		GFF2182	0.49	-0.4
2,199,740	+		GFF2182	0.49	-0.6
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2,199,782	-		GFF2182	0.54	-1.7
2,199,788	+		GFF2182	0.55	-0.5
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2,199,844	-		GFF2182	0.61	-1.7
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2,199,876	-		GFF2182	0.65	-0.4
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2,199,889	+		GFF2182	0.67	-0.7
2,199,897	-		GFF2182	0.68	-2.7
2,199,897	-		GFF2182	0.68	-0.1
2,199,907	+		GFF2182	0.69	-0.3
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2,199,932	+		GFF2182	0.72	-0.6
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2,199,932	+		GFF2182	0.72	-0.8
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2,199,932	+		GFF2182	0.72	-1.5
2,199,932	+		GFF2182	0.72	-2.7
2,199,932	+		GFF2182	0.72	-1.6
2,199,932	+		GFF2182	0.72	-0.2
2,199,932	+		GFF2182	0.72	-0.5
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2,199,932	+		GFF2182	0.72	-0.2
2,199,932	+		GFF2182	0.72	-0.5
2,199,932	+		GFF2182	0.72	-0.6
2,199,932	+		GFF2182	0.72	-2.3
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2,199,932	+		GFF2182	0.72	-0.6
2,199,932	+		GFF2182	0.72	-0.9
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2,199,940	-		GFF2182	0.73	-0.3
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2,199,940	-		GFF2182	0.73	-1.5
2,199,940	-		GFF2182	0.73	-0.9
2,199,940	-		GFF2182	0.73	-1.4
2,199,940	-		GFF2182	0.73	-1.0
2,199,940	-		GFF2182	0.73	-2.4
2,199,940	-		GFF2182	0.73	-3.1
2,199,940	-		GFF2182	0.73	-2.2
2,199,940	-		GFF2182	0.73	+0.1
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2,199,945	-		GFF2182	0.74	-0.2
2,199,977	-		GFF2182	0.78	-1.8
2,199,980	+		GFF2182	0.78	-0.6
2,199,981	+		GFF2182	0.78	-0.2
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2,199,988	+		GFF2182	0.79	+0.2