Strain Fitness in Sphingobium sp. HT1-2 around GFF2033

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,061,523	-		GFF2031	0.87	+0.8
2,061,548	+		GFF2031	0.89	-2.1
2,061,562	-				-0.5
2,061,569	+				+1.4
2,061,611	-				+1.1
2,061,641	-				-0.3
2,061,646	-				-1.0
2,061,658	-				+1.6
2,061,702	+				-1.2
2,061,702	+				-0.6
2,061,710	+				+0.6
2,061,710	+				+0.9
2,061,752	+				+0.9
2,061,760	-				+1.3
2,061,777	+				-1.8
2,061,777	+				-0.1
2,061,778	+				+0.8
2,061,778	+				+0.4
2,061,786	-				-0.5
2,061,786	-				+0.5
2,061,838	+				-0.6
2,061,838	+				+0.5
2,061,841	-				-0.9
2,061,841	-				-0.5
2,061,841	-				+0.0
2,061,846	-				+0.7
2,061,905	+		GFF2032	0.19	+0.3
2,061,968	-		GFF2032	0.29	+1.1
2,061,968	-		GFF2032	0.29	-0.2
2,061,968	-		GFF2032	0.29	-0.5
2,062,014	-		GFF2032	0.36	+0.6
2,062,014	-		GFF2032	0.36	+1.7
2,062,093	+		GFF2032	0.48	-0.7
2,062,101	-		GFF2032	0.50	-0.8
2,062,127	-		GFF2032	0.54	-0.6
2,062,158	-		GFF2032	0.59	+0.2
2,062,174	-		GFF2032	0.61	-0.5
2,062,260	+		GFF2032	0.75	+0.6
2,062,274	+		GFF2032	0.77	-0.2
2,062,328	+		GFF2032	0.85	+0.5
2,062,328	+		GFF2032	0.85	-0.3
2,062,407	+				+0.5
2,062,422	+				-0.3
2,062,435	+				+1.5
2,062,438	-				-0.4
2,062,441	-				-0.8
2,062,443	-				+1.1
2,062,444	+				+0.3
2,062,472	-				+0.3
2,062,529	+				+1.8
2,062,563	+				-1.5
2,062,580	+				+1.1
2,062,644	+				+1.4
2,062,644	+				+0.5
2,062,644	+				+0.4
2,062,644	+				+1.3
2,062,644	+				-2.0
2,062,645	+				+0.0
2,062,676	+				-0.8
2,062,711	+		GFF2033	0.10	+0.7
2,062,727	+		GFF2033	0.11	-0.3
2,062,727	+		GFF2033	0.11	-1.3
2,062,731	+		GFF2033	0.11	+0.0
2,062,731	+		GFF2033	0.11	+0.1
2,062,753	-		GFF2033	0.12	+0.6
2,062,779	+		GFF2033	0.14	-0.2
2,062,779	+		GFF2033	0.14	+0.5
2,062,779	+		GFF2033	0.14	-1.6
2,062,787	-		GFF2033	0.14	+1.0
2,062,787	-		GFF2033	0.14	-0.4
2,062,787	-		GFF2033	0.14	+1.9
2,062,792	-		GFF2033	0.14	-0.5
2,062,792	-		GFF2033	0.14	-0.2
2,062,809	+		GFF2033	0.15	-0.1
2,062,817	-		GFF2033	0.16	+0.3
2,062,817	-		GFF2033	0.16	-0.5
2,062,824	-		GFF2033	0.16	-0.0
2,062,824	-		GFF2033	0.16	-0.5
2,062,845	+		GFF2033	0.17	+0.8
2,062,853	-		GFF2033	0.18	+0.3
2,062,853	-		GFF2033	0.18	+0.0
2,062,876	-		GFF2033	0.19	+0.2
2,062,876	-		GFF2033	0.19	+0.4
2,062,876	-		GFF2033	0.19	+0.4
2,062,878	+		GFF2033	0.19	-1.5
2,062,933	+		GFF2033	0.22	+0.7
2,062,935	+		GFF2033	0.22	-1.7
2,062,962	+		GFF2033	0.23	+0.0
2,062,964	+		GFF2033	0.24	-0.7
2,062,964	+		GFF2033	0.24	-0.2
2,062,964	+		GFF2033	0.24	-0.7
2,062,972	-		GFF2033	0.24	+0.2
2,062,977	-		GFF2033	0.24	-0.2
2,062,997	+		GFF2033	0.25	-0.6
2,063,031	-		GFF2033	0.27	+1.0
2,063,036	+		GFF2033	0.27	-0.7
2,063,036	-		GFF2033	0.27	+1.7
2,063,037	-		GFF2033	0.27	-0.4
2,063,093	+		GFF2033	0.30	+1.8
2,063,093	+		GFF2033	0.30	-0.7
2,063,101	-		GFF2033	0.31	-1.3
2,063,101	-		GFF2033	0.31	-1.5
2,063,102	-		GFF2033	0.31	-0.0
2,063,102	-		GFF2033	0.31	-0.3
2,063,102	-		GFF2033	0.31	+0.6
2,063,102	-		GFF2033	0.31	+0.5
2,063,113	+		GFF2033	0.31	-0.1
2,063,124	+		GFF2033	0.32	+0.2
2,063,130	+		GFF2033	0.32	-0.1
2,063,130	+		GFF2033	0.32	+0.3
2,063,130	+		GFF2033	0.32	+1.2
2,063,138	-		GFF2033	0.33	+1.0
2,063,138	-		GFF2033	0.33	+0.6
2,063,138	-		GFF2033	0.33	-0.7
2,063,138	-		GFF2033	0.33	+0.4
2,063,138	-		GFF2033	0.33	+1.2
2,063,187	+		GFF2033	0.35	+0.9
2,063,196	+		GFF2033	0.36	+1.3
2,063,224	+		GFF2033	0.37	+0.3
2,063,226	-		GFF2033	0.37	+0.0
2,063,226	-		GFF2033	0.37	-0.5
2,063,283	+		GFF2033	0.40	+0.0
2,063,297	+		GFF2033	0.41	+0.6
2,063,298	+		GFF2033	0.41	-0.8
2,063,313	+		GFF2033	0.42	+1.2
2,063,313	+		GFF2033	0.42	-1.0
2,063,321	-		GFF2033	0.42	+0.2
2,063,321	-		GFF2033	0.42	+1.2
2,063,321	-		GFF2033	0.42	+0.7
2,063,336	-		GFF2033	0.43	-1.7
2,063,355	+		GFF2033	0.44	+0.4
2,063,387	+		GFF2033	0.46	-0.2
2,063,537	-		GFF2033	0.54	+1.7
2,063,546	-		GFF2033	0.54	-0.1
2,063,610	+		GFF2033	0.57	+0.6
2,063,610	+		GFF2033	0.57	-0.7
2,063,618	-		GFF2033	0.58	+1.1
2,063,618	-		GFF2033	0.58	-1.0
2,063,632	+		GFF2033	0.59	-0.9
2,063,633	-		GFF2033	0.59	+0.5
2,063,633	-		GFF2033	0.59	-0.2
2,063,640	-		GFF2033	0.59	+0.5
2,063,645	-		GFF2033	0.59	+0.5
2,063,645	-		GFF2033	0.59	+0.2
2,063,645	-		GFF2033	0.59	+0.2
2,063,665	+		GFF2033	0.60	+1.3
2,063,677	+		GFF2033	0.61	-1.1
2,063,677	+		GFF2033	0.61	-0.6
2,063,704	+		GFF2033	0.62	-0.5
2,063,704	+		GFF2033	0.62	+0.4
2,063,704	+		GFF2033	0.62	+0.4
2,063,743	+		GFF2033	0.64	+1.6
2,063,791	+		GFF2033	0.67	+1.1
2,063,794	-		GFF2033	0.67	+0.0
2,063,799	-		GFF2033	0.67	-2.3
2,063,799	-		GFF2033	0.67	+0.3
2,063,803	+		GFF2033	0.68	-2.1
2,063,806	-		GFF2033	0.68	-0.8
2,063,816	-		GFF2033	0.68	+0.9
2,063,932	+		GFF2033	0.74	-0.2
2,063,959	-		GFF2033	0.76	+0.7
2,064,039	+		GFF2033	0.80	-0.3
2,064,051	+		GFF2033	0.81	-0.6
2,064,059	+		GFF2033	0.81	+1.1
2,064,059	+		GFF2033	0.81	+1.1
2,064,067	-		GFF2033	0.81	+0.3
2,064,087	+		GFF2033	0.82	-0.7
2,064,087	+		GFF2033	0.82	+2.2
2,064,087	+		GFF2033	0.82	+0.6
2,064,095	-		GFF2033	0.83	+0.9
2,064,095	-		GFF2033	0.83	-0.5
2,064,106	+		GFF2033	0.83	-1.4
2,064,111	+		GFF2033	0.84	-1.3
2,064,138	-		GFF2033	0.85	+0.7
2,064,192	-		GFF2033	0.88	+0.0
2,064,225	+		GFF2033	0.90	+0.9
2,064,225	+		GFF2033	0.90	+0.3
2,064,227	+		GFF2033	0.90	+0.1
2,064,233	-				+0.5
2,064,233	-				-2.4
2,064,233	-				+0.8
2,064,233	-				-0.4
2,064,233	-				-0.4
2,064,233	-				-1.2
2,064,233	-				-0.1
2,064,233	-				+0.0
2,064,233	-				-0.4
2,064,233	-				-0.5
2,064,250	-				-0.5
2,064,276	+				+0.2
2,064,335	+				+0.6
2,064,335	+				-0.1
2,064,343	-				-1.2
2,064,343	-				-0.3
2,064,343	-				+0.2
2,064,343	-				-2.0
2,064,343	-				+0.3
2,064,343	-				+1.4
2,064,353	-				+0.3
2,064,403	+				+0.6
2,064,432	-				+0.7
2,064,500	+				-2.0
2,064,543	+				-1.7
2,064,568	-		GFF2034	0.10	-0.0
2,064,583	-		GFF2034	0.11	-1.0
2,064,602	+		GFF2034	0.13	-0.2
2,064,627	-		GFF2034	0.15	-1.0
2,064,658	-		GFF2034	0.17	-2.2
2,064,702	+		GFF2034	0.20	-0.8
2,064,709	+		GFF2034	0.20	+0.2
2,064,717	-		GFF2034	0.21	-0.5
2,064,734	+		GFF2034	0.22	+0.5
2,064,758	-		GFF2034	0.24	+0.4
2,064,789	-		GFF2034	0.26	-0.8
2,064,789	-		GFF2034	0.26	-0.3
2,064,885	-		GFF2034	0.32	-1.0
2,064,888	-		GFF2034	0.33	+0.5
2,064,915	-		GFF2034	0.34	-1.3
2,064,915	-		GFF2034	0.34	+0.1
2,064,939	-		GFF2034	0.36	-0.5
2,064,942	+		GFF2034	0.36	-1.3
2,064,944	-		GFF2034	0.36	+0.5
2,064,950	-		GFF2034	0.37	+0.2
2,064,968	-		GFF2034	0.38	-0.5
2,064,968	-		GFF2034	0.38	-1.0
2,065,016	-		GFF2034	0.41	-0.4
2,065,066	+		GFF2034	0.45	+0.8
2,065,066	+		GFF2034	0.45	+0.5
2,065,066	+		GFF2034	0.45	+0.7
2,065,066	+		GFF2034	0.45	-0.7
2,065,066	+		GFF2034	0.45	+1.5
2,065,066	+		GFF2034	0.45	-0.2
2,065,074	-		GFF2034	0.45	-3.1
2,065,074	-		GFF2034	0.45	-1.8
2,065,074	-		GFF2034	0.45	-0.4
2,065,074	-		GFF2034	0.45	+1.6
2,065,140	-		GFF2034	0.50	-0.5
2,065,142	-		GFF2034	0.50	-2.0
2,065,143	-		GFF2034	0.50	-0.5
2,065,177	-		GFF2034	0.53	-1.8
2,065,178	-		GFF2034	0.53	+0.4
2,065,178	-		GFF2034	0.53	-1.8
2,065,178	-		GFF2034	0.53	+0.5
2,065,214	+		GFF2034	0.55	-0.1
2,065,218	-		GFF2034	0.55	-1.0
2,065,220	+		GFF2034	0.56	-0.3
2,065,296	+		GFF2034	0.61	-1.7
2,065,304	-		GFF2034	0.61	-0.2
2,065,370	+		GFF2034	0.66	-2.3
2,065,370	+		GFF2034	0.66	-1.2
2,065,381	+		GFF2034	0.67	-2.6
2,065,402	-		GFF2034	0.68	-0.7
2,065,402	-		GFF2034	0.68	+0.1
2,065,404	+		GFF2034	0.68	-1.5