Strain Fitness in Sphingobium sp. HT1-2 around GFF1917

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,940,844	+				-0.0
1,940,844	+				-0.7
1,940,852	-				-1.2
1,940,865	-				-1.5
1,940,877	+				-1.2
1,940,898	+				+0.5
1,940,952	+				-0.8
1,940,953	+				-0.2
1,940,953	+				-1.1
1,940,961	-				+0.8
1,940,961	-				-1.7
1,940,961	-				-0.2
1,940,961	-				+0.5
1,940,961	-				-0.7
1,940,984	+				+1.6
1,940,994	+				-0.1
1,940,994	+				-0.7
1,940,994	+				-0.5
1,941,002	+				+0.0
1,941,002	-				-0.8
1,941,002	-				+1.2
1,941,002	-				-0.8
1,941,010	-				-2.2
1,941,010	-				-1.4
1,941,015	+				+0.3
1,941,036	+				-0.4
1,941,038	-				+0.2
1,941,041	+				+0.3
1,941,043	-				-0.2
1,941,062	+				-0.5
1,941,072	+				+0.5
1,941,073	+				-1.2
1,941,075	-				-0.1
1,941,080	-				+0.3
1,941,081	-				+1.1
1,941,111	+				-1.2
1,941,114	+				+0.6
1,941,114	+				-1.0
1,941,114	+				+0.6
1,941,114	+				-0.9
1,941,114	+				-0.1
1,941,114	+				+0.4
1,941,114	+				+1.3
1,941,116	+				-0.7
1,941,116	+				-0.6
1,941,122	-				+0.2
1,941,124	-				-0.8
1,941,124	-				-0.8
1,941,124	-				+0.2
1,941,124	-				-0.1
1,941,124	-				-0.2
1,941,124	-				-1.1
1,941,124	-				+0.2
1,941,124	-				-2.0
1,941,124	-				-1.5
1,941,124	-				+0.8
1,941,124	-				+0.2
1,941,124	-				+0.0
1,941,124	-				-0.2
1,941,155	+				+1.0
1,941,165	-				-0.1
1,941,168	-				-0.2
1,941,176	-				-0.5
1,941,192	+				+1.3
1,941,212	+		GFF1917	0.10	+0.5
1,941,212	+		GFF1917	0.10	-1.3
1,941,212	+		GFF1917	0.10	-0.7
1,941,212	+		GFF1917	0.10	+0.0
1,941,220	-		GFF1917	0.11	-1.5
1,941,220	-		GFF1917	0.11	-1.6
1,941,226	+		GFF1917	0.11	+0.6
1,941,242	+		GFF1917	0.12	+0.1
1,941,259	+		GFF1917	0.13	+0.3
1,941,259	+		GFF1917	0.13	-0.6
1,941,259	+		GFF1917	0.13	-0.1
1,941,259	+		GFF1917	0.13	-1.4
1,941,267	-		GFF1917	0.13	+0.7
1,941,267	-		GFF1917	0.13	-1.6
1,941,267	-		GFF1917	0.13	+0.1
1,941,284	+		GFF1917	0.14	+0.3
1,941,284	+		GFF1917	0.14	+0.0
1,941,307	+		GFF1917	0.15	+0.6
1,941,317	+		GFF1917	0.16	-0.8
1,941,325	-		GFF1917	0.16	-1.3
1,941,337	-		GFF1917	0.17	+0.1
1,941,337	-		GFF1917	0.17	-2.1
1,941,337	-		GFF1917	0.17	+0.4
1,941,337	-		GFF1917	0.17	-2.6
1,941,337	-		GFF1917	0.17	-0.1
1,941,388	+		GFF1917	0.19	+0.3
1,941,388	+		GFF1917	0.19	+1.2
1,941,388	+		GFF1917	0.19	-0.9
1,941,390	+		GFF1917	0.19	-1.4
1,941,396	-		GFF1917	0.20	-1.1
1,941,396	-		GFF1917	0.20	-0.5
1,941,396	-		GFF1917	0.20	-0.3
1,941,406	-		GFF1917	0.20	-0.9
1,941,411	-		GFF1917	0.20	-0.4
1,941,433	+		GFF1917	0.21	+0.0
1,941,436	+		GFF1917	0.22	-0.4
1,941,436	+		GFF1917	0.22	+0.7
1,941,444	-		GFF1917	0.22	-0.7
1,941,476	+		GFF1917	0.24	-1.7
1,941,488	+		GFF1917	0.24	+0.7
1,941,556	+		GFF1917	0.28	-0.1
1,941,562	+		GFF1917	0.28	+0.2
1,941,564	-		GFF1917	0.28	+0.0
1,941,581	-		GFF1917	0.29	+0.6
1,941,589	+		GFF1917	0.29	+0.5
1,941,589	+		GFF1917	0.29	-0.6
1,941,599	+		GFF1917	0.30	+0.3
1,941,599	+		GFF1917	0.30	+1.0
1,941,608	+		GFF1917	0.30	-0.6
1,941,620	+		GFF1917	0.31	+1.1
1,941,625	+		GFF1917	0.31	+0.3
1,941,625	+		GFF1917	0.31	+0.2
1,941,625	+		GFF1917	0.31	-0.7
1,941,625	+		GFF1917	0.31	+0.5
1,941,633	+		GFF1917	0.31	-0.1
1,941,633	+		GFF1917	0.31	+0.7
1,941,633	+		GFF1917	0.31	-1.1
1,941,633	+		GFF1917	0.31	+0.3
1,941,633	+		GFF1917	0.31	-1.4
1,941,633	+		GFF1917	0.31	+1.2
1,941,633	+		GFF1917	0.31	-0.1
1,941,633	+		GFF1917	0.31	-0.5
1,941,633	-		GFF1917	0.31	-0.8
1,941,641	-		GFF1917	0.32	-1.2
1,941,641	-		GFF1917	0.32	-1.1
1,941,659	-		GFF1917	0.33	-0.5
1,941,673	-		GFF1917	0.33	-0.5
1,941,674	+		GFF1917	0.34	-0.6
1,941,679	+		GFF1917	0.34	-1.0
1,941,689	+		GFF1917	0.34	+0.3
1,941,703	+		GFF1917	0.35	+1.2
1,941,704	+		GFF1917	0.35	+0.4
1,941,721	-		GFF1917	0.36	-0.2
1,941,721	-		GFF1917	0.36	-0.5
1,941,721	-		GFF1917	0.36	+0.0
1,941,737	+		GFF1917	0.37	-1.6
1,941,744	-		GFF1917	0.37	+0.2
1,941,744	-		GFF1917	0.37	+0.6
1,941,749	-		GFF1917	0.37	-1.2
1,941,781	+		GFF1917	0.39	+0.4
1,941,789	-		GFF1917	0.39	+0.2
1,941,789	-		GFF1917	0.39	-0.0
1,941,789	-		GFF1917	0.39	-1.1
1,941,789	-		GFF1917	0.39	-0.4
1,941,834	-		GFF1917	0.42	+0.3
1,941,843	+		GFF1917	0.42	+0.3
1,941,851	-		GFF1917	0.42	-0.2
1,941,867	-		GFF1917	0.43	+0.3
1,941,885	+		GFF1917	0.44	+1.2
1,941,885	+		GFF1917	0.44	-2.1
1,941,891	+		GFF1917	0.44	+0.8
1,941,893	-		GFF1917	0.45	-0.7
1,941,896	+		GFF1917	0.45	+0.5
1,941,920	-		GFF1917	0.46	-0.1
1,941,925	+		GFF1917	0.46	-2.1
1,941,925	+		GFF1917	0.46	+0.4
1,941,925	+		GFF1917	0.46	-0.1
1,941,925	+		GFF1917	0.46	-1.5
1,941,933	-		GFF1917	0.47	-0.3
1,941,935	+		GFF1917	0.47	-1.4
1,941,935	+		GFF1917	0.47	+0.8
1,941,938	-		GFF1917	0.47	+0.2
1,941,943	-		GFF1917	0.47	+0.1
1,941,952	+		GFF1917	0.47	+0.5
1,941,978	+		GFF1917	0.49	-0.5
1,941,990	+		GFF1917	0.49	-0.8
1,941,996	-		GFF1917	0.50	-0.3
1,941,999	+		GFF1917	0.50	-0.2
1,942,012	+		GFF1917	0.51	-1.1
1,942,017	+		GFF1917	0.51	-2.2
1,942,017	+		GFF1917	0.51	-0.7
1,942,017	+		GFF1917	0.51	-0.0
1,942,025	-		GFF1917	0.51	+0.0
1,942,032	-		GFF1917	0.52	-2.6
1,942,040	-		GFF1917	0.52	-0.6
1,942,048	+		GFF1917	0.52	+0.2
1,942,049	+		GFF1917	0.52	+0.6
1,942,059	+		GFF1917	0.53	+0.4
1,942,059	+		GFF1917	0.53	+0.3
1,942,059	+		GFF1917	0.53	-0.7
1,942,067	-		GFF1917	0.53	-2.2
1,942,072	-		GFF1917	0.54	-1.4
1,942,077	+		GFF1917	0.54	-0.1
1,942,099	-		GFF1917	0.55	+0.3
1,942,102	+		GFF1917	0.55	+1.4
1,942,102	-		GFF1917	0.55	-0.2
1,942,155	+		GFF1917	0.58	+0.8
1,942,180	+		GFF1917	0.59	-0.1
1,942,180	-		GFF1917	0.59	-0.2
1,942,211	+		GFF1917	0.60	+0.9
1,942,211	+		GFF1917	0.60	-0.5
1,942,217	-		GFF1917	0.61	-0.7
1,942,218	-		GFF1917	0.61	-1.7
1,942,218	-		GFF1917	0.61	+0.5
1,942,245	-		GFF1917	0.62	-0.7
1,942,247	+		GFF1917	0.62	+0.6
1,942,255	-		GFF1917	0.63	+0.7
1,942,265	+		GFF1917	0.63	-0.4
1,942,276	+		GFF1917	0.64	-0.7
1,942,276	+		GFF1917	0.64	-0.4
1,942,276	+		GFF1917	0.64	+0.6
1,942,276	+		GFF1917	0.64	+0.1
1,942,278	-		GFF1917	0.64	-0.1
1,942,284	-		GFF1917	0.64	+1.0
1,942,284	-		GFF1917	0.64	+0.1
1,942,284	-		GFF1917	0.64	+0.9
1,942,284	-		GFF1917	0.64	-0.8
1,942,286	+		GFF1917	0.64	+1.1
1,942,327	+		GFF1917	0.66	+0.3
1,942,328	-		GFF1917	0.66	+0.8
1,942,355	-		GFF1917	0.68	-1.9
1,942,362	-		GFF1917	0.68	-0.3
1,942,413	-		GFF1917	0.71	-2.7
1,942,413	-		GFF1917	0.71	+0.1
1,942,413	-		GFF1917	0.71	-0.0
1,942,424	+		GFF1917	0.71	+0.1
1,942,424	+		GFF1917	0.71	-1.8
1,942,432	+		GFF1917	0.72	+0.0
1,942,432	-		GFF1917	0.72	+0.3
1,942,437	-		GFF1917	0.72	+0.4
1,942,439	-		GFF1917	0.72	-0.7
1,942,440	-		GFF1917	0.72	+1.4
1,942,440	-		GFF1917	0.72	+0.0
1,942,472	-		GFF1917	0.74	-0.4
1,942,492	+		GFF1917	0.75	-0.6
1,942,497	+		GFF1917	0.75	+0.2
1,942,500	-		GFF1917	0.75	+1.0
1,942,522	+		GFF1917	0.76	-0.5
1,942,531	-		GFF1917	0.77	+0.6
1,942,531	-		GFF1917	0.77	+0.2
1,942,545	-		GFF1917	0.77	-0.3
1,942,580	-		GFF1917	0.79	+0.1
1,942,589	+		GFF1917	0.79	+0.6
1,942,595	-		GFF1917	0.80	-0.4
1,942,597	-		GFF1917	0.80	+1.1
1,942,598	+		GFF1917	0.80	+0.3
1,942,605	+		GFF1917	0.80	+0.5
1,942,605	+		GFF1917	0.80	+1.6
1,942,605	+		GFF1917	0.80	+0.3
1,942,624	-		GFF1917	0.81	-0.2
1,942,636	-		GFF1917	0.82	-1.5
1,942,645	+		GFF1917	0.82	+0.5
1,942,657	-		GFF1917	0.83	-1.3
1,942,658	-		GFF1917	0.83	-0.7
1,942,678	-		GFF1917	0.84	-2.0
1,942,678	-		GFF1917	0.84	+0.6
1,942,678	-		GFF1917	0.84	+0.4
1,942,679	+		GFF1917	0.84	+1.0
1,942,683	-		GFF1917	0.84	+1.3
1,942,717	-		GFF1917	0.86	-0.2
1,942,735	-		GFF1917	0.87	+0.3
1,942,752	-		GFF1917	0.88	-1.8
1,942,807	-				-1.5
1,942,891	+				-1.7
1,942,910	+				+0.8
1,942,918	-				+0.8
1,942,918	-				+1.0
1,942,926	+				+0.0
1,942,926	+				+0.2
1,942,926	+				-0.9
1,942,926	+				-0.1
1,942,926	+				+1.2
1,942,931	+				-2.6
1,942,933	+				+1.1
1,942,933	+				-0.8
1,942,933	+				-0.6
1,942,933	+				-0.3
1,942,933	+				+0.1
1,942,933	+				+0.0
1,942,933	+				-0.9
1,942,934	-				-0.8
1,942,934	-				-2.9
1,942,934	-				-0.1
1,942,934	-				+0.2
1,942,934	-				+0.7
1,942,941	-				-1.0
1,942,941	-				+0.2
1,942,941	-				-0.7
1,942,951	-				-1.2
1,943,321	+		GFF1918	0.42	+0.8
1,943,623	-		GFF1918	0.76	-1.0
1,943,700	+		GFF1918	0.85	-0.4
1,943,813	+				+1.2
1,943,821	-				-0.5
1,943,853	-				+0.2
1,943,857	+				+0.7
1,943,865	-				+0.4
1,943,867	+				-0.1
1,943,870	+				+1.9
1,943,873	-				+0.4
1,943,875	-				+0.8
1,943,883	-				-0.1
1,943,914	+				-0.9
1,943,922	+				-0.1
1,943,922	-				+0.6
1,943,930	-				-0.8
1,943,958	-				+1.1
1,943,969	-				-1.1
1,943,982	+		GFF1919	0.11	-0.2
1,943,994	+		GFF1919	0.13	+0.3