Strain Fitness in Sphingobium sp. HT1-2 around GFF1869

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,895,243	+				-0.4
1,895,251	-				+0.7
1,895,251	-				+0.4
1,895,251	-				-1.3
1,895,251	-				+0.6
1,895,251	-				-0.3
1,895,254	+				-0.4
1,895,286	-				-1.4
1,895,291	+				+0.5
1,895,291	+				+1.3
1,895,291	+				+1.1
1,895,291	+				-2.5
1,895,291	+				-0.6
1,895,291	+				-1.2
1,895,291	+				-0.0
1,895,291	+				-1.6
1,895,294	-				+1.1
1,895,299	-				-1.1
1,895,299	-				+0.7
1,895,299	-				-0.8
1,895,299	-				+0.4
1,895,299	-				+0.6
1,895,304	+				-0.7
1,895,311	+				+0.7
1,895,311	+				-0.4
1,895,315	+				-0.5
1,895,316	+				+0.1
1,895,319	-				-1.4
1,895,323	-				+0.0
1,895,324	-				+0.4
1,895,332	+				+0.7
1,895,366	+		GFF1868	0.12	-0.3
1,895,398	+		GFF1868	0.15	-0.8
1,895,398	+		GFF1868	0.15	-1.2
1,895,421	+		GFF1868	0.18	-2.1
1,895,426	-		GFF1868	0.18	-1.0
1,895,440	-		GFF1868	0.19	+0.5
1,895,440	-		GFF1868	0.19	+0.4
1,895,472	+		GFF1868	0.23	-1.1
1,895,472	+		GFF1868	0.23	+0.0
1,895,472	+		GFF1868	0.23	+0.5
1,895,473	-		GFF1868	0.23	-0.3
1,895,500	-		GFF1868	0.25	+0.0
1,895,500	-		GFF1868	0.25	+0.0
1,895,513	+		GFF1868	0.27	-0.2
1,895,513	+		GFF1868	0.27	-1.6
1,895,521	-		GFF1868	0.28	+0.0
1,895,531	-		GFF1868	0.29	-2.4
1,895,544	+		GFF1868	0.30	-1.6
1,895,544	+		GFF1868	0.30	+0.3
1,895,544	+		GFF1868	0.30	+1.3
1,895,544	+		GFF1868	0.30	+0.5
1,895,551	-		GFF1868	0.31	+0.7
1,895,552	+		GFF1868	0.31	-1.8
1,895,552	+		GFF1868	0.31	+0.1
1,895,552	-		GFF1868	0.31	-0.7
1,895,552	-		GFF1868	0.31	-0.2
1,895,552	-		GFF1868	0.31	+0.9
1,895,552	-		GFF1868	0.31	-0.8
1,895,572	-		GFF1868	0.33	-1.9
1,895,577	+		GFF1868	0.33	-1.1
1,895,612	+		GFF1868	0.37	+0.5
1,895,612	+		GFF1868	0.37	+0.1
1,895,633	+		GFF1868	0.39	-0.3
1,895,633	+		GFF1868	0.39	+0.8
1,895,636	-		GFF1868	0.39	-0.3
1,895,636	-		GFF1868	0.39	-1.4
1,895,636	-		GFF1868	0.39	-0.5
1,895,641	-		GFF1868	0.40	+0.1
1,895,641	-		GFF1868	0.40	-0.8
1,895,641	-		GFF1868	0.40	-0.8
1,895,655	-		GFF1868	0.41	-0.4
1,895,655	-		GFF1868	0.41	+0.3
1,895,657	+		GFF1868	0.41	-0.7
1,895,665	-		GFF1868	0.42	-1.0
1,895,681	+		GFF1868	0.44	-1.2
1,895,767	+		GFF1868	0.52	-0.6
1,895,768	-		GFF1868	0.52	-1.5
1,895,775	-		GFF1868	0.53	+0.0
1,895,775	-		GFF1868	0.53	+0.8
1,895,827	-		GFF1868	0.58	-0.2
1,895,867	+		GFF1868	0.62	-0.4
1,895,868	-		GFF1868	0.63	+0.1
1,895,875	-		GFF1868	0.63	+0.7
1,895,879	+		GFF1868	0.64	-1.8
1,895,880	-		GFF1868	0.64	+1.3
1,895,884	+		GFF1868	0.64	-1.8
1,895,894	+		GFF1868	0.65	-0.2
1,895,902	+		GFF1868	0.66	-0.8
1,895,902	+		GFF1868	0.66	-1.1
1,895,909	+		GFF1868	0.67	-0.1
1,895,909	-		GFF1868	0.67	+0.3
1,895,909	-		GFF1868	0.67	+1.8
1,895,910	+		GFF1868	0.67	-0.6
1,895,910	-		GFF1868	0.67	+0.3
1,895,936	-		GFF1868	0.69	-1.3
1,895,939	+		GFF1868	0.70	-1.8
1,895,939	+		GFF1868	0.70	-2.1
1,895,948	+		GFF1868	0.71	+0.2
1,895,948	+		GFF1868	0.71	+0.3
1,895,948	+		GFF1868	0.71	-1.1
1,895,948	+		GFF1868	0.71	-0.4
1,895,948	+		GFF1868	0.71	-0.5
1,895,948	+		GFF1868	0.71	-0.1
1,895,948	+		GFF1868	0.71	-0.4
1,895,948	+		GFF1868	0.71	+0.5
1,895,948	+		GFF1868	0.71	+1.3
1,895,948	+		GFF1868	0.71	-1.3
1,895,948	+		GFF1868	0.71	+0.3
1,895,956	-		GFF1868	0.71	-0.2
1,895,956	-		GFF1868	0.71	-0.8
1,895,956	-		GFF1868	0.71	-0.2
1,895,956	-		GFF1868	0.71	-0.5
1,895,956	-		GFF1868	0.71	+0.2
1,895,956	-		GFF1868	0.71	-0.4
1,895,956	-		GFF1868	0.71	+0.2
1,895,956	-		GFF1868	0.71	-0.6
1,895,959	-		GFF1868	0.72	-0.7
1,895,961	-		GFF1868	0.72	+1.7
1,895,963	+		GFF1868	0.72	+1.2
1,895,970	+		GFF1868	0.73	+1.5
1,895,973	+		GFF1868	0.73	-1.5
1,895,978	+		GFF1868	0.74	+0.6
1,895,978	+		GFF1868	0.74	-0.5
1,895,978	+		GFF1868	0.74	-0.3
1,895,986	+		GFF1868	0.74	-2.3
1,895,986	+		GFF1868	0.74	-0.6
1,895,986	+		GFF1868	0.74	-0.5
1,895,986	+		GFF1868	0.74	-1.4
1,895,986	-		GFF1868	0.74	-1.7
1,895,991	-		GFF1868	0.75	+1.2
1,895,994	-		GFF1868	0.75	+0.1
1,896,000	-		GFF1868	0.76	-0.1
1,896,054	+		GFF1868	0.81	-0.3
1,896,054	+		GFF1868	0.81	-0.9
1,896,057	-		GFF1868	0.82	-0.4
1,896,064	-		GFF1868	0.82	+0.2
1,896,065	+		GFF1868	0.82	+0.6
1,896,072	+		GFF1868	0.83	-0.1
1,896,077	+		GFF1868	0.84	+0.0
1,896,088	+		GFF1868	0.85	+0.3
1,896,090	+		GFF1868	0.85	+1.4
1,896,090	+		GFF1868	0.85	-0.3
1,896,090	+		GFF1868	0.85	+0.0
1,896,092	+		GFF1868	0.85	-0.1
1,896,095	+		GFF1868	0.85	-1.3
1,896,098	-		GFF1868	0.86	-0.4
1,896,156	-				-1.4
1,896,161	+				+1.0
1,896,163	+				-2.1
1,896,171	-				-0.3
1,896,182	+				-1.0
1,896,182	+				-1.1
1,896,182	+				+1.1
1,896,182	+				+0.0
1,896,182	+				+0.1
1,896,182	+				-2.2
1,896,182	+				-1.4
1,896,182	+				-1.9
1,896,182	+				+0.9
1,896,182	+				+1.0
1,896,182	+				-0.9
1,896,190	-				-1.4
1,896,190	-				+1.3
1,896,190	-				+1.0
1,896,190	-				-2.1
1,896,190	-				-0.7
1,896,190	-				-1.8
1,896,190	-				-0.1
1,896,190	-				+1.2
1,896,229	-				+0.1
1,896,232	+				+0.4
1,896,233	+				+0.0
1,896,241	-				+1.1
1,896,261	+				+0.5
1,896,273	+				-1.3
1,896,281	-				+1.2
1,896,333	+		GFF1869	0.19	-0.1
1,896,365	+		GFF1869	0.25	-0.3
1,896,372	-		GFF1869	0.26	+1.2
1,896,377	+		GFF1869	0.27	+0.2
1,896,382	+		GFF1869	0.28	-1.5
1,896,382	+		GFF1869	0.28	+0.3
1,896,382	+		GFF1869	0.28	+0.3
1,896,385	-		GFF1869	0.29	-1.2
1,896,390	-		GFF1869	0.30	-0.3
1,896,398	-		GFF1869	0.31	-0.7
1,896,398	-		GFF1869	0.31	+0.0
1,896,399	+		GFF1869	0.32	+1.0
1,896,399	+		GFF1869	0.32	+1.1
1,896,418	+		GFF1869	0.35	-0.1
1,896,430	+		GFF1869	0.38	-0.6
1,896,430	+		GFF1869	0.38	+1.5
1,896,433	-		GFF1869	0.38	+0.1
1,896,439	-		GFF1869	0.39	+0.3
1,896,452	+		GFF1869	0.42	-2.4
1,896,452	+		GFF1869	0.42	+0.0
1,896,465	-		GFF1869	0.44	-2.0
1,896,491	+		GFF1869	0.49	+0.3
1,896,551	+		GFF1869	0.61	-0.8
1,896,551	+		GFF1869	0.61	-0.9
1,896,551	+		GFF1869	0.61	+0.7
1,896,551	+		GFF1869	0.61	+0.5
1,896,551	+		GFF1869	0.61	+0.6
1,896,559	-		GFF1869	0.63	+1.7
1,896,559	-		GFF1869	0.63	+0.9
1,896,559	-		GFF1869	0.63	-1.4
1,896,559	-		GFF1869	0.63	-0.1
1,896,559	-		GFF1869	0.63	-0.3
1,896,564	-		GFF1869	0.64	+0.6
1,896,570	+		GFF1869	0.65	-0.3
1,896,575	+		GFF1869	0.66	+0.7
1,896,583	-		GFF1869	0.67	-0.3
1,896,583	-		GFF1869	0.67	+0.9
1,896,659	+		GFF1869	0.82	-1.6
1,896,664	+		GFF1869	0.83	-0.3
1,896,667	-		GFF1869	0.84	-1.1
1,896,672	-		GFF1869	0.84	+0.7
1,896,674	+		GFF1869	0.85	-1.4
1,896,674	+		GFF1869	0.85	-0.3
1,896,677	-		GFF1869	0.85	-2.6
1,896,682	-		GFF1869	0.86	-1.8
1,896,697	-		GFF1869	0.89	-0.4
1,896,697	-		GFF1869	0.89	+0.2
1,896,705	+				-1.2
1,896,713	+				+1.7
1,896,721	-				-0.5
1,896,731	-				-0.6
1,896,742	+				-0.1
1,896,742	+				+0.3
1,896,742	+				-0.8
1,896,747	+				+1.0
1,896,747	+				-1.3
1,896,747	+				-0.5
1,896,750	-				-0.8
1,896,755	-				-0.3
1,896,755	-				-0.1
1,896,755	-				-0.1
1,896,755	-				-0.7
1,896,802	-				-0.1
1,896,824	+				-0.6
1,896,829	+				+0.1
1,896,838	+				+1.5
1,896,871	+				-2.1
1,896,871	+				-0.3
1,896,871	+				-0.8
1,896,871	+				+1.7
1,896,871	+				+0.6
1,896,879	-				-1.9
1,896,879	-				-1.3
1,896,886	+				-0.3
1,896,893	+				+1.2
1,896,893	+				+0.1
1,896,893	-				-0.3
1,896,899	-				-0.4
1,896,899	-				-0.4
1,896,946	+				-1.3
1,896,956	-				-1.1
1,896,961	+		GFF1870	0.10	+0.6
1,896,969	-		GFF1870	0.11	+0.1
1,896,977	+		GFF1870	0.11	-2.2
1,896,981	-		GFF1870	0.12	+1.2
1,896,985	-		GFF1870	0.12	-0.6
1,897,000	+		GFF1870	0.13	-0.8
1,897,005	+		GFF1870	0.14	-0.6
1,897,010	+		GFF1870	0.14	-1.7
1,897,010	+		GFF1870	0.14	-0.7
1,897,010	+		GFF1870	0.14	-0.2
1,897,010	+		GFF1870	0.14	-0.6
1,897,010	+		GFF1870	0.14	-1.6
1,897,010	+		GFF1870	0.14	+0.1
1,897,010	+		GFF1870	0.14	+0.2
1,897,010	+		GFF1870	0.14	+0.6
1,897,010	+		GFF1870	0.14	-0.5
1,897,010	+		GFF1870	0.14	-0.4
1,897,010	+		GFF1870	0.14	-1.6
1,897,018	-		GFF1870	0.15	-2.1
1,897,018	-		GFF1870	0.15	+0.1
1,897,018	-		GFF1870	0.15	-1.1
1,897,018	-		GFF1870	0.15	-2.6
1,897,018	-		GFF1870	0.15	-1.8
1,897,018	-		GFF1870	0.15	-1.3
1,897,018	-		GFF1870	0.15	-0.3
1,897,030	-		GFF1870	0.16	-0.4
1,897,054	+		GFF1870	0.17	-0.7
1,897,056	-		GFF1870	0.18	+1.0
1,897,056	-		GFF1870	0.18	+1.0
1,897,061	+		GFF1870	0.18	+0.1
1,897,062	-		GFF1870	0.18	+1.2
1,897,072	-		GFF1870	0.19	+0.6
1,897,107	-		GFF1870	0.22	+0.6
1,897,121	+		GFF1870	0.23	-1.1
1,897,126	+		GFF1870	0.23	-0.1
1,897,129	-		GFF1870	0.23	-0.2
1,897,131	+		GFF1870	0.24	-0.7
1,897,134	-		GFF1870	0.24	+0.3
1,897,134	-		GFF1870	0.24	-0.6
1,897,136	+		GFF1870	0.24	-0.1
1,897,136	+		GFF1870	0.24	+1.5
1,897,142	+		GFF1870	0.24	+0.4
1,897,144	-		GFF1870	0.25	-0.1
1,897,144	-		GFF1870	0.25	-0.3
1,897,144	-		GFF1870	0.25	-0.0
1,897,147	+		GFF1870	0.25	+0.1
1,897,147	+		GFF1870	0.25	+1.3
1,897,147	+		GFF1870	0.25	+1.9
1,897,152	+		GFF1870	0.25	-1.9
1,897,152	+		GFF1870	0.25	-0.3
1,897,159	+		GFF1870	0.26	+0.0
1,897,159	+		GFF1870	0.26	+0.5
1,897,159	+		GFF1870	0.26	-1.8
1,897,160	-		GFF1870	0.26	+0.1
1,897,167	-		GFF1870	0.26	-0.5
1,897,167	-		GFF1870	0.26	-1.1
1,897,169	+		GFF1870	0.27	-0.9
1,897,217	+		GFF1870	0.30	+0.1
1,897,223	+		GFF1870	0.31	-1.4
1,897,226	-		GFF1870	0.31	-2.1
1,897,229	+		GFF1870	0.31	-0.9
1,897,231	-		GFF1870	0.32	-1.3
1,897,231	-		GFF1870	0.32	-1.5
1,897,231	-		GFF1870	0.32	-0.4
1,897,231	-		GFF1870	0.32	-0.3
1,897,231	-		GFF1870	0.32	-0.3
1,897,262	+		GFF1870	0.34	-0.3
1,897,278	+		GFF1870	0.35	-0.9
1,897,278	+		GFF1870	0.35	-0.4
1,897,320	+		GFF1870	0.39	+1.0
1,897,325	+		GFF1870	0.39	+1.1
1,897,325	+		GFF1870	0.39	-2.3
1,897,333	-		GFF1870	0.40	-0.9
1,897,342	+		GFF1870	0.40	+0.0
1,897,352	+		GFF1870	0.41	+0.7
1,897,352	+		GFF1870	0.41	-0.5
1,897,360	-		GFF1870	0.42	+0.7
1,897,379	-		GFF1870	0.43	-0.4
1,897,379	-		GFF1870	0.43	-1.9
1,897,379	-		GFF1870	0.43	-2.7
1,897,384	-		GFF1870	0.44	+0.8
1,897,384	-		GFF1870	0.44	+1.0
1,897,384	-		GFF1870	0.44	-0.1
1,897,384	-		GFF1870	0.44	-1.6
1,897,384	-		GFF1870	0.44	-1.9
1,897,405	-		GFF1870	0.45	+0.2
1,897,493	-		GFF1870	0.52	+0.2
1,897,495	+		GFF1870	0.53	+0.3
1,897,503	-		GFF1870	0.53	-0.2
1,897,503	-		GFF1870	0.53	-0.9
1,897,509	-		GFF1870	0.54	-1.0
1,897,511	+		GFF1870	0.54	+0.5
1,897,550	+		GFF1870	0.57	+0.3
1,897,550	+		GFF1870	0.57	-0.6
1,897,556	+		GFF1870	0.57	+0.5
1,897,622	+		GFF1870	0.63	-1.2
1,897,622	+		GFF1870	0.63	-1.9
1,897,622	+		GFF1870	0.63	-0.2
1,897,623	+		GFF1870	0.63	-2.0
1,897,623	+		GFF1870	0.63	+0.5
1,897,624	+		GFF1870	0.63	+0.6
1,897,624	+		GFF1870	0.63	-0.3
1,897,624	+		GFF1870	0.63	+0.0
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