Strain Fitness in Sphingobium sp. HT1-2 around GFF1792

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,814,177	-		GFF1791	0.30	-0.5
1,814,205	+		GFF1791	0.32	+0.0
1,814,232	+		GFF1791	0.34	-1.3
1,814,232	+		GFF1791	0.34	-0.4
1,814,232	+		GFF1791	0.34	+0.2
1,814,232	+		GFF1791	0.34	-1.7
1,814,240	-		GFF1791	0.35	-0.3
1,814,240	-		GFF1791	0.35	-1.3
1,814,240	-		GFF1791	0.35	-1.1
1,814,295	+		GFF1791	0.39	+0.7
1,814,295	+		GFF1791	0.39	-0.2
1,814,295	+		GFF1791	0.39	+1.0
1,814,303	-		GFF1791	0.40	-1.7
1,814,303	-		GFF1791	0.40	+0.4
1,814,303	-		GFF1791	0.40	+0.5
1,814,303	-		GFF1791	0.40	-0.1
1,814,303	-		GFF1791	0.40	-0.2
1,814,303	-		GFF1791	0.40	+0.5
1,814,303	-		GFF1791	0.40	+0.5
1,814,325	-		GFF1791	0.41	-0.3
1,814,325	-		GFF1791	0.41	-0.3
1,814,327	+		GFF1791	0.41	+2.2
1,814,339	+		GFF1791	0.42	-0.2
1,814,339	+		GFF1791	0.42	-0.7
1,814,339	+		GFF1791	0.42	-1.4
1,814,339	+		GFF1791	0.42	-0.4
1,814,347	-		GFF1791	0.43	+0.3
1,814,347	-		GFF1791	0.43	-0.3
1,814,347	-		GFF1791	0.43	+0.3
1,814,352	-		GFF1791	0.43	+0.3
1,814,370	-		GFF1791	0.45	-0.4
1,814,418	-		GFF1791	0.48	+0.8
1,814,440	+		GFF1791	0.50	-0.1
1,814,450	-		GFF1791	0.51	-0.7
1,814,463	-		GFF1791	0.52	-0.1
1,814,471	+		GFF1791	0.52	-0.1
1,814,479	-		GFF1791	0.53	+0.7
1,814,486	-		GFF1791	0.54	-0.9
1,814,501	-		GFF1791	0.55	+0.0
1,814,503	+		GFF1791	0.55	-0.3
1,814,508	+		GFF1791	0.55	-0.4
1,814,511	-		GFF1791	0.55	-1.4
1,814,511	-		GFF1791	0.55	-0.8
1,814,525	-		GFF1791	0.56	+0.1
1,814,533	+		GFF1791	0.57	-1.1
1,814,535	+		GFF1791	0.57	-0.4
1,814,572	+		GFF1791	0.60	+0.5
1,814,572	+		GFF1791	0.60	-0.1
1,814,580	-		GFF1791	0.61	-0.2
1,814,580	-		GFF1791	0.61	+0.3
1,814,585	+		GFF1791	0.61	-0.1
1,814,585	+		GFF1791	0.61	+0.3
1,814,585	+		GFF1791	0.61	+0.1
1,814,585	+		GFF1791	0.61	-0.7
1,814,593	-		GFF1791	0.62	+0.3
1,814,593	-		GFF1791	0.62	-0.3
1,814,593	-		GFF1791	0.62	-1.6
1,814,593	-		GFF1791	0.62	-0.1
1,814,595	+		GFF1791	0.62	-0.1
1,814,638	-		GFF1791	0.65	-0.4
1,814,638	-		GFF1791	0.65	-0.0
1,814,680	-		GFF1791	0.68	-0.3
1,814,699	+		GFF1791	0.70	-1.1
1,814,699	-		GFF1791	0.70	+0.3
1,814,707	+		GFF1791	0.70	-1.4
1,814,707	-		GFF1791	0.70	-2.1
1,814,723	-		GFF1791	0.72	-2.1
1,814,733	+		GFF1791	0.72	-1.0
1,814,739	+		GFF1791	0.73	-0.7
1,814,765	+		GFF1791	0.75	+1.2
1,814,769	+		GFF1791	0.75	+0.1
1,814,772	-		GFF1791	0.75	-2.4
1,814,773	-		GFF1791	0.75	-0.9
1,814,779	+		GFF1791	0.76	-0.2
1,814,779	+		GFF1791	0.76	-1.1
1,814,794	+		GFF1791	0.77	-1.1
1,814,805	+		GFF1791	0.78	-1.1
1,814,805	+		GFF1791	0.78	+0.1
1,814,805	+		GFF1791	0.78	-2.3
1,814,813	-		GFF1791	0.79	-0.4
1,814,813	-		GFF1791	0.79	-0.1
1,814,813	-		GFF1791	0.79	-0.7
1,814,813	-		GFF1791	0.79	+0.7
1,814,814	+		GFF1791	0.79	+0.3
1,814,820	-		GFF1791	0.79	-0.1
1,814,824	+		GFF1791	0.79	+0.0
1,814,873	+		GFF1791	0.83	-0.3
1,814,881	-		GFF1791	0.84	-1.1
1,814,881	-		GFF1791	0.84	-1.8
1,814,903	+		GFF1791	0.85	+0.5
1,814,903	+		GFF1791	0.85	+0.3
1,814,903	+		GFF1791	0.85	-0.2
1,814,909	+		GFF1791	0.86	+0.4
1,814,909	+		GFF1791	0.86	+0.9
1,814,909	+		GFF1791	0.86	+0.0
1,814,911	-		GFF1791	0.86	+0.6
1,814,911	-		GFF1791	0.86	+0.7
1,814,914	+		GFF1791	0.86	-0.1
1,814,917	-		GFF1791	0.86	+0.2
1,814,917	-		GFF1791	0.86	+0.6
1,814,917	-		GFF1791	0.86	-0.1
1,814,917	-		GFF1791	0.86	+0.1
1,814,917	-		GFF1791	0.86	+1.1
1,814,922	-		GFF1791	0.87	-1.3
1,814,922	-		GFF1791	0.87	+0.3
1,814,932	-		GFF1791	0.88	-1.1
1,814,959	-		GFF1791	0.90	-1.4
1,814,959	-		GFF1791	0.90	-1.9
1,814,964	-				+0.5
1,814,970	-				-1.6
1,814,973	+				-0.3
1,814,989	+				+0.5
1,815,004	-				-0.5
1,815,010	-				-2.2
1,815,010	-				-1.6
1,815,010	-				+0.1
1,815,010	-				+0.1
1,815,037	+				+0.1
1,815,037	+				-0.7
1,815,048	+				+0.4
1,815,056	-				+0.9
1,815,058	+				+1.0
1,815,066	-				-0.4
1,815,066	-				-0.2
1,815,081	-				-0.4
1,815,099	-				-1.6
1,815,105	+				+0.5
1,815,105	+				-0.7
1,815,105	+				+1.0
1,815,109	-				+0.0
1,815,125	+				-1.3
1,815,125	+				-0.4
1,815,138	-				-1.8
1,815,146	+				-0.1
1,815,178	-				+0.2
1,815,179	+				-0.2
1,815,183	-				-0.9
1,815,187	-				-0.4
1,815,187	-				-2.1
1,815,207	+				-0.2
1,815,237	-				-1.6
1,815,237	-				-0.7
1,815,242	+				+0.7
1,815,246	-				+1.3
1,815,254	-				-0.5
1,815,294	+		GFF1792	0.13	-0.6
1,815,294	+		GFF1792	0.13	-1.1
1,815,296	-		GFF1792	0.13	+0.3
1,815,302	-		GFF1792	0.14	+0.9
1,815,302	-		GFF1792	0.14	+1.5
1,815,303	-		GFF1792	0.14	+1.0
1,815,304	+		GFF1792	0.14	-0.5
1,815,362	+		GFF1792	0.20	-0.6
1,815,370	-		GFF1792	0.21	+1.4
1,815,390	+		GFF1792	0.23	-0.3
1,815,390	+		GFF1792	0.23	-1.3
1,815,397	-		GFF1792	0.24	+0.4
1,815,398	-		GFF1792	0.24	+0.1
1,815,398	-		GFF1792	0.24	+0.4
1,815,409	-		GFF1792	0.25	+0.3
1,815,409	-		GFF1792	0.25	-1.8
1,815,455	+		GFF1792	0.30	-1.2
1,815,459	+		GFF1792	0.30	+0.6
1,815,463	-		GFF1792	0.30	-0.1
1,815,469	-		GFF1792	0.31	+0.9
1,815,469	-		GFF1792	0.31	-1.4
1,815,476	+		GFF1792	0.32	+1.2
1,815,476	+		GFF1792	0.32	-0.7
1,815,476	+		GFF1792	0.32	-0.1
1,815,478	+		GFF1792	0.32	+0.9
1,815,484	-		GFF1792	0.33	+0.9
1,815,484	-		GFF1792	0.33	-0.3
1,815,484	-		GFF1792	0.33	+0.1
1,815,484	-		GFF1792	0.33	-0.8
1,815,484	-		GFF1792	0.33	+1.1
1,815,489	-		GFF1792	0.33	-1.6
1,815,489	-		GFF1792	0.33	-1.1
1,815,491	+		GFF1792	0.33	-0.7
1,815,491	+		GFF1792	0.33	+0.5
1,815,499	-		GFF1792	0.34	-2.3
1,815,499	-		GFF1792	0.34	+0.6
1,815,525	-		GFF1792	0.37	-0.2
1,815,550	-		GFF1792	0.39	+0.6
1,815,594	+		GFF1792	0.44	-1.2
1,815,622	+		GFF1792	0.47	+0.3
1,815,636	+		GFF1792	0.48	-1.5
1,815,644	+		GFF1792	0.49	-0.3
1,815,659	+		GFF1792	0.51	-0.8
1,815,659	+		GFF1792	0.51	-0.4
1,815,659	+		GFF1792	0.51	-1.4
1,815,659	+		GFF1792	0.51	-1.9
1,815,659	+		GFF1792	0.51	+0.5
1,815,667	-		GFF1792	0.52	-0.3
1,815,667	-		GFF1792	0.52	-0.3
1,815,667	-		GFF1792	0.52	+1.2
1,815,667	-		GFF1792	0.52	+0.9
1,815,667	-		GFF1792	0.52	+0.1
1,815,673	+		GFF1792	0.52	+0.2
1,815,676	-		GFF1792	0.53	-0.8
1,815,678	+		GFF1792	0.53	-0.1
1,815,683	+		GFF1792	0.53	-0.1
1,815,691	-		GFF1792	0.54	+0.3
1,815,754	+		GFF1792	0.61	-2.8
1,815,769	-		GFF1792	0.62	-0.3
1,815,786	-		GFF1792	0.64	-0.8
1,815,787	-		GFF1792	0.64	-1.8
1,815,806	-		GFF1792	0.66	+0.5
1,815,843	-		GFF1792	0.70	-0.4
1,815,854	-		GFF1792	0.71	-1.0
1,815,854	-		GFF1792	0.71	-1.5
1,815,854	-		GFF1792	0.71	+0.7
1,815,856	+		GFF1792	0.71	+0.3
1,815,856	+		GFF1792	0.71	+0.2
1,815,856	+		GFF1792	0.71	-1.7
1,815,856	+		GFF1792	0.71	+0.4
1,815,856	+		GFF1792	0.71	-1.4
1,815,856	+		GFF1792	0.71	+0.6
1,815,856	+		GFF1792	0.71	+0.3
1,815,856	+		GFF1792	0.71	+0.9
1,815,856	+		GFF1792	0.71	+0.7
1,815,856	+		GFF1792	0.71	-1.2
1,815,856	+		GFF1792	0.71	-0.4
1,815,858	+		GFF1792	0.72	-1.3
1,815,864	-		GFF1792	0.72	-0.3
1,815,864	-		GFF1792	0.72	+0.1
1,815,864	-		GFF1792	0.72	+0.2
1,815,864	-		GFF1792	0.72	+0.7
1,815,864	-		GFF1792	0.72	-0.6
1,815,864	-		GFF1792	0.72	+0.3
1,815,864	-		GFF1792	0.72	-2.0
1,815,864	-		GFF1792	0.72	-1.0
1,815,864	-		GFF1792	0.72	-0.3
1,815,864	-		GFF1792	0.72	-1.1
1,815,864	-		GFF1792	0.72	-1.5
1,815,864	-		GFF1792	0.72	-0.4
1,815,866	+		GFF1792	0.73	-1.6
1,815,876	+		GFF1792	0.74	-0.1
1,815,876	+		GFF1792	0.74	-1.9
1,815,879	-		GFF1792	0.74	+0.0
1,815,881	+		GFF1792	0.74	-0.3
1,815,881	+		GFF1792	0.74	+0.1
1,815,881	+		GFF1792	0.74	-1.9
1,815,884	-		GFF1792	0.74	+0.8
1,815,884	-		GFF1792	0.74	-2.4
1,815,884	-		GFF1792	0.74	-0.3
1,815,884	-		GFF1792	0.74	+0.4
1,815,884	-		GFF1792	0.74	-0.9
1,815,884	-		GFF1792	0.74	-0.1
1,815,886	+		GFF1792	0.75	-0.2
1,815,886	+		GFF1792	0.75	+0.5
1,815,886	+		GFF1792	0.75	-0.7
1,815,886	+		GFF1792	0.75	+0.0
1,815,886	+		GFF1792	0.75	-0.6
1,815,886	+		GFF1792	0.75	+0.1
1,815,886	+		GFF1792	0.75	-0.2
1,815,886	+		GFF1792	0.75	+0.1
1,815,886	+		GFF1792	0.75	-1.5
1,815,886	+		GFF1792	0.75	-1.5
1,815,889	-		GFF1792	0.75	+1.1
1,815,889	-		GFF1792	0.75	-2.8
1,815,889	-		GFF1792	0.75	-1.3
1,815,889	-		GFF1792	0.75	-1.3
1,815,889	-		GFF1792	0.75	-1.3
1,815,889	-		GFF1792	0.75	-0.9
1,815,891	+		GFF1792	0.75	-0.8
1,815,894	-		GFF1792	0.75	+0.1
1,815,894	-		GFF1792	0.75	+0.4
1,815,894	-		GFF1792	0.75	+0.5
1,815,894	-		GFF1792	0.75	+0.0
1,815,894	-		GFF1792	0.75	-1.8
1,815,894	-		GFF1792	0.75	-1.1
1,815,911	+		GFF1792	0.77	-0.3
1,815,911	+		GFF1792	0.77	+0.9
1,815,911	+		GFF1792	0.77	+0.1
1,815,911	+		GFF1792	0.77	-0.8
1,815,911	+		GFF1792	0.77	+0.2
1,815,919	-		GFF1792	0.78	-1.1
1,815,919	-		GFF1792	0.78	-0.9
1,815,919	-		GFF1792	0.78	-0.1
1,815,919	-		GFF1792	0.78	+1.7
1,815,919	-		GFF1792	0.78	-0.1
1,815,919	-		GFF1792	0.78	+0.3
1,815,919	-		GFF1792	0.78	-0.6
1,815,919	-		GFF1792	0.78	-1.7
1,815,919	-		GFF1792	0.78	+0.3
1,815,936	+		GFF1792	0.80	-0.5
1,815,936	+		GFF1792	0.80	-0.2
1,815,972	+		GFF1792	0.84	+0.3
1,815,982	-		GFF1792	0.85	+0.7
1,816,017	+		GFF1792	0.88	-1.5
1,816,038	-				+0.2
1,816,041	+				-1.3
1,816,046	+				-1.3
1,816,046	+				+0.6
1,816,049	-				-1.3
1,816,054	-				-0.8
1,816,084	+				+0.1
1,816,087	-				+0.1
1,816,092	-				-1.4
1,816,092	-				+0.0
1,816,095	-				-1.3
1,816,126	-				+0.7
1,816,197	-				-0.5
1,816,200	+				-1.5
1,816,232	+				-0.6
1,816,240	-				-0.3
1,816,242	-				-1.3
1,816,328	-				-0.2
1,816,328	-				-1.6
1,816,328	-				-0.3
1,816,330	+				-0.4
1,816,352	-				+0.4
1,816,354	-				+1.1
1,816,354	-				-1.1
1,816,396	+				-1.9
1,816,417	+				-1.6
1,816,425	-				+0.6
1,816,425	-				-0.4
1,816,431	-				+0.9
1,816,441	-				-0.3
1,816,451	-				+0.8
1,816,457	-				+0.5
1,816,541	+		GFF1793	0.29	-1.1
1,816,560	+		GFF1793	0.39	-0.1
1,816,593	+		GFF1793	0.55	-1.5
1,816,616	-		GFF1793	0.66	-0.5
1,816,618	+		GFF1793	0.67	+0.1
1,816,618	+		GFF1793	0.67	+0.8
1,816,618	+		GFF1793	0.67	+1.0
1,816,618	+		GFF1793	0.67	-1.1
1,816,618	+		GFF1793	0.67	+0.8
1,816,618	+		GFF1793	0.67	-0.8
1,816,618	+		GFF1793	0.67	-0.3
1,816,626	-		GFF1793	0.71	-0.8
1,816,626	-		GFF1793	0.71	-0.6
1,816,626	-		GFF1793	0.71	-2.7
1,816,629	+		GFF1793	0.73	+0.1
1,816,629	+		GFF1793	0.73	-0.5
1,816,629	+		GFF1793	0.73	-1.5
1,816,634	+		GFF1793	0.75	-1.1
1,816,634	+		GFF1793	0.75	+0.7
1,816,634	+		GFF1793	0.75	-0.4
1,816,634	+		GFF1793	0.75	+0.1
1,816,634	+		GFF1793	0.75	+0.3
1,816,634	+		GFF1793	0.75	-0.1
1,816,634	+		GFF1793	0.75	+0.3
1,816,634	+		GFF1793	0.75	+0.6
1,816,634	+		GFF1793	0.75	+0.1
1,816,634	+		GFF1793	0.75	-0.3
1,816,634	+		GFF1793	0.75	+0.3
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