Strain Fitness in Sphingobium sp. HT1-2 around GFF1791

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,812,786	-		GFF1790	0.39	-0.6
1,812,805	-		GFF1790	0.40	-0.3
1,812,819	-		GFF1790	0.41	+0.5
1,812,819	-		GFF1790	0.41	-0.9
1,812,825	-		GFF1790	0.42	+0.9
1,812,834	+		GFF1790	0.42	-2.0
1,812,834	+		GFF1790	0.42	+0.4
1,812,842	-		GFF1790	0.43	+2.0
1,812,842	-		GFF1790	0.43	-0.3
1,812,842	-		GFF1790	0.43	+0.2
1,812,847	+		GFF1790	0.43	-1.6
1,812,855	-		GFF1790	0.44	+0.1
1,812,856	+		GFF1790	0.44	+0.5
1,812,864	+		GFF1790	0.44	+0.4
1,812,864	-		GFF1790	0.44	-0.5
1,812,881	-		GFF1790	0.46	-1.3
1,812,882	+		GFF1790	0.46	-0.2
1,812,904	+		GFF1790	0.48	-0.8
1,812,904	+		GFF1790	0.48	-1.8
1,812,904	+		GFF1790	0.48	-0.7
1,812,904	+		GFF1790	0.48	-1.0
1,812,904	+		GFF1790	0.48	-0.2
1,812,904	+		GFF1790	0.48	-0.1
1,812,904	+		GFF1790	0.48	+0.8
1,812,912	-		GFF1790	0.48	+0.8
1,812,912	-		GFF1790	0.48	-1.5
1,812,912	-		GFF1790	0.48	+1.0
1,812,912	-		GFF1790	0.48	-0.5
1,812,912	-		GFF1790	0.48	+0.2
1,812,912	-		GFF1790	0.48	+1.6
1,812,912	-		GFF1790	0.48	+1.3
1,812,912	-		GFF1790	0.48	-0.8
1,812,920	+		GFF1790	0.49	+0.4
1,812,949	+		GFF1790	0.51	-0.9
1,812,955	-		GFF1790	0.51	-1.3
1,812,962	-		GFF1790	0.52	-0.8
1,812,988	-		GFF1790	0.54	-1.5
1,813,008	-		GFF1790	0.56	+0.7
1,813,008	-		GFF1790	0.56	-0.4
1,813,012	+		GFF1790	0.56	+0.3
1,813,028	-		GFF1790	0.57	+1.0
1,813,040	-		GFF1790	0.58	+0.7
1,813,042	+		GFF1790	0.58	-1.1
1,813,042	+		GFF1790	0.58	+0.2
1,813,061	+		GFF1790	0.60	-0.2
1,813,061	+		GFF1790	0.60	+0.2
1,813,069	-		GFF1790	0.60	+0.7
1,813,069	-		GFF1790	0.60	-1.2
1,813,069	-		GFF1790	0.60	+0.0
1,813,071	-		GFF1790	0.60	+0.6
1,813,090	+		GFF1790	0.62	+0.1
1,813,095	+		GFF1790	0.62	-1.6
1,813,095	+		GFF1790	0.62	+0.4
1,813,095	+		GFF1790	0.62	+0.3
1,813,103	-		GFF1790	0.63	-0.9
1,813,103	-		GFF1790	0.63	-0.3
1,813,103	-		GFF1790	0.63	-0.1
1,813,104	-		GFF1790	0.63	+0.6
1,813,138	+		GFF1790	0.65	-0.8
1,813,150	-		GFF1790	0.66	-2.3
1,813,151	-		GFF1790	0.66	-1.1
1,813,157	-		GFF1790	0.67	-0.8
1,813,171	+		GFF1790	0.68	-0.3
1,813,210	+		GFF1790	0.71	-0.2
1,813,210	+		GFF1790	0.71	-1.4
1,813,210	+		GFF1790	0.71	-0.3
1,813,216	+		GFF1790	0.71	+0.8
1,813,216	+		GFF1790	0.71	-1.4
1,813,218	-		GFF1790	0.72	+0.2
1,813,218	-		GFF1790	0.72	-0.5
1,813,218	-		GFF1790	0.72	-1.0
1,813,224	-		GFF1790	0.72	-0.8
1,813,224	-		GFF1790	0.72	-0.3
1,813,229	-		GFF1790	0.72	-0.5
1,813,235	+		GFF1790	0.73	-1.3
1,813,235	+		GFF1790	0.73	-1.4
1,813,248	+		GFF1790	0.74	+2.0
1,813,251	-		GFF1790	0.74	-1.2
1,813,253	+		GFF1790	0.74	+0.7
1,813,256	+		GFF1790	0.74	+0.6
1,813,261	-		GFF1790	0.75	+0.7
1,813,261	-		GFF1790	0.75	-1.8
1,813,273	+		GFF1790	0.76	-1.9
1,813,273	+		GFF1790	0.76	-0.1
1,813,294	+		GFF1790	0.77	-1.3
1,813,301	+		GFF1790	0.78	+0.5
1,813,325	+		GFF1790	0.80	-1.6
1,813,325	+		GFF1790	0.80	+0.3
1,813,325	+		GFF1790	0.80	-1.4
1,813,328	-		GFF1790	0.80	-1.3
1,813,328	-		GFF1790	0.80	+0.4
1,813,328	-		GFF1790	0.80	-1.4
1,813,328	-		GFF1790	0.80	+0.4
1,813,330	+		GFF1790	0.80	-1.0
1,813,330	+		GFF1790	0.80	-0.1
1,813,333	-		GFF1790	0.80	-0.5
1,813,333	-		GFF1790	0.80	+1.1
1,813,338	-		GFF1790	0.81	-0.3
1,813,338	-		GFF1790	0.81	-0.8
1,813,338	-		GFF1790	0.81	-0.1
1,813,343	-		GFF1790	0.81	+0.3
1,813,367	+		GFF1790	0.83	-1.2
1,813,375	-		GFF1790	0.84	-0.1
1,813,375	-		GFF1790	0.84	+0.6
1,813,390	+		GFF1790	0.85	+0.7
1,813,390	+		GFF1790	0.85	-0.8
1,813,421	+		GFF1790	0.87	-0.9
1,813,486	+				-2.1
1,813,491	+				-0.6
1,813,494	-				-0.5
1,813,494	-				-0.3
1,813,494	-				-0.1
1,813,494	-				+0.3
1,813,499	-				+1.1
1,813,538	+				-1.4
1,813,546	-				-0.3
1,813,551	-				+0.0
1,813,559	+				-1.9
1,813,584	+				-0.6
1,813,587	-				-0.3
1,813,591	+				+0.4
1,813,592	-				+0.8
1,813,599	+				-0.1
1,813,618	+				-0.7
1,813,648	+				-1.3
1,813,658	+				-0.6
1,813,658	+				-0.1
1,813,658	+				-0.6
1,813,659	+				+0.2
1,813,664	+				-1.1
1,813,672	-				-0.6
1,813,672	-				-1.7
1,813,672	-				+0.5
1,813,689	+				-1.5
1,813,696	+				-0.4
1,813,697	-				-0.8
1,813,697	-				-0.0
1,813,704	+				-0.8
1,813,752	+				-1.1
1,813,767	+				+0.0
1,813,775	-				+0.9
1,813,777	+				-0.8
1,813,785	-				+0.6
1,813,785	-				+1.1
1,813,789	-				-1.2
1,813,806	+				-0.3
1,813,814	-				+0.2
1,813,835	+				-0.6
1,813,835	+				-0.1
1,813,835	+				+0.2
1,813,835	+				+0.3
1,813,837	-				-1.6
1,813,842	-				-0.4
1,813,843	-				+1.1
1,813,855	-				-0.5
1,813,867	+				+0.3
1,813,885	+				-0.8
1,813,885	+				+0.8
1,813,893	-				-0.6
1,813,893	-				-0.7
1,813,893	-				+0.4
1,813,893	-				-0.8
1,813,894	+				-2.0
1,813,910	+				+0.9
1,813,918	-		GFF1791	0.10	+1.5
1,813,928	+		GFF1791	0.11	+0.3
1,813,928	+		GFF1791	0.11	-0.3
1,813,932	+		GFF1791	0.11	+0.1
1,813,936	-		GFF1791	0.11	-0.1
1,813,936	-		GFF1791	0.11	+1.2
1,813,936	-		GFF1791	0.11	+0.1
1,813,936	-		GFF1791	0.11	-0.5
1,813,954	+		GFF1791	0.13	-0.5
1,813,963	+		GFF1791	0.14	-1.0
1,813,986	-		GFF1791	0.15	-0.8
1,813,999	-		GFF1791	0.16	-1.0
1,813,999	-		GFF1791	0.16	+0.5
1,814,000	+		GFF1791	0.16	-2.5
1,814,009	+		GFF1791	0.17	-0.1
1,814,009	+		GFF1791	0.17	+1.5
1,814,017	-		GFF1791	0.18	-0.5
1,814,017	-		GFF1791	0.18	+0.7
1,814,021	+		GFF1791	0.18	-2.9
1,814,101	-		GFF1791	0.24	+0.6
1,814,113	+		GFF1791	0.25	-1.0
1,814,113	+		GFF1791	0.25	-1.6
1,814,119	+		GFF1791	0.25	-2.6
1,814,119	+		GFF1791	0.25	-0.7
1,814,133	-		GFF1791	0.27	+0.0
1,814,141	+		GFF1791	0.27	-1.0
1,814,141	+		GFF1791	0.27	-1.7
1,814,141	+		GFF1791	0.27	+0.3
1,814,141	+		GFF1791	0.27	-1.7
1,814,149	-		GFF1791	0.28	+0.3
1,814,149	-		GFF1791	0.28	-0.9
1,814,149	-		GFF1791	0.28	-0.8
1,814,169	+		GFF1791	0.29	-1.0
1,814,169	+		GFF1791	0.29	-0.1
1,814,177	-		GFF1791	0.30	-0.5
1,814,205	+		GFF1791	0.32	+0.0
1,814,232	+		GFF1791	0.34	-1.3
1,814,232	+		GFF1791	0.34	-0.4
1,814,232	+		GFF1791	0.34	+0.2
1,814,232	+		GFF1791	0.34	-1.7
1,814,240	-		GFF1791	0.35	-0.3
1,814,240	-		GFF1791	0.35	-1.3
1,814,240	-		GFF1791	0.35	-1.1
1,814,295	+		GFF1791	0.39	+0.7
1,814,295	+		GFF1791	0.39	-0.2
1,814,295	+		GFF1791	0.39	+1.0
1,814,303	-		GFF1791	0.40	-1.7
1,814,303	-		GFF1791	0.40	+0.4
1,814,303	-		GFF1791	0.40	+0.5
1,814,303	-		GFF1791	0.40	-0.1
1,814,303	-		GFF1791	0.40	-0.2
1,814,303	-		GFF1791	0.40	+0.5
1,814,303	-		GFF1791	0.40	+0.5
1,814,325	-		GFF1791	0.41	-0.3
1,814,325	-		GFF1791	0.41	-0.3
1,814,327	+		GFF1791	0.41	+2.2
1,814,339	+		GFF1791	0.42	-0.2
1,814,339	+		GFF1791	0.42	-0.7
1,814,339	+		GFF1791	0.42	-1.4
1,814,339	+		GFF1791	0.42	-0.4
1,814,347	-		GFF1791	0.43	+0.3
1,814,347	-		GFF1791	0.43	-0.3
1,814,347	-		GFF1791	0.43	+0.3
1,814,352	-		GFF1791	0.43	+0.3
1,814,370	-		GFF1791	0.45	-0.4
1,814,418	-		GFF1791	0.48	+0.8
1,814,440	+		GFF1791	0.50	-0.1
1,814,450	-		GFF1791	0.51	-0.7
1,814,463	-		GFF1791	0.52	-0.1
1,814,471	+		GFF1791	0.52	-0.1
1,814,479	-		GFF1791	0.53	+0.7
1,814,486	-		GFF1791	0.54	-0.9
1,814,501	-		GFF1791	0.55	+0.0
1,814,503	+		GFF1791	0.55	-0.3
1,814,508	+		GFF1791	0.55	-0.4
1,814,511	-		GFF1791	0.55	-1.4
1,814,511	-		GFF1791	0.55	-0.8
1,814,525	-		GFF1791	0.56	+0.1
1,814,533	+		GFF1791	0.57	-1.1
1,814,535	+		GFF1791	0.57	-0.4
1,814,572	+		GFF1791	0.60	+0.5
1,814,572	+		GFF1791	0.60	-0.1
1,814,580	-		GFF1791	0.61	-0.2
1,814,580	-		GFF1791	0.61	+0.3
1,814,585	+		GFF1791	0.61	-0.1
1,814,585	+		GFF1791	0.61	+0.3
1,814,585	+		GFF1791	0.61	+0.1
1,814,585	+		GFF1791	0.61	-0.7
1,814,593	-		GFF1791	0.62	+0.3
1,814,593	-		GFF1791	0.62	-0.3
1,814,593	-		GFF1791	0.62	-1.6
1,814,593	-		GFF1791	0.62	-0.1
1,814,595	+		GFF1791	0.62	-0.1
1,814,638	-		GFF1791	0.65	-0.4
1,814,638	-		GFF1791	0.65	-0.0
1,814,680	-		GFF1791	0.68	-0.3
1,814,699	+		GFF1791	0.70	-1.1
1,814,699	-		GFF1791	0.70	+0.3
1,814,707	+		GFF1791	0.70	-1.4
1,814,707	-		GFF1791	0.70	-2.1
1,814,723	-		GFF1791	0.72	-2.1
1,814,733	+		GFF1791	0.72	-1.0
1,814,739	+		GFF1791	0.73	-0.7
1,814,765	+		GFF1791	0.75	+1.2
1,814,769	+		GFF1791	0.75	+0.1
1,814,772	-		GFF1791	0.75	-2.4
1,814,773	-		GFF1791	0.75	-0.9
1,814,779	+		GFF1791	0.76	-0.2
1,814,779	+		GFF1791	0.76	-1.1
1,814,794	+		GFF1791	0.77	-1.1
1,814,805	+		GFF1791	0.78	-1.1
1,814,805	+		GFF1791	0.78	+0.1
1,814,805	+		GFF1791	0.78	-2.3
1,814,813	-		GFF1791	0.79	-0.4
1,814,813	-		GFF1791	0.79	-0.1
1,814,813	-		GFF1791	0.79	-0.7
1,814,813	-		GFF1791	0.79	+0.7
1,814,814	+		GFF1791	0.79	+0.3
1,814,820	-		GFF1791	0.79	-0.1
1,814,824	+		GFF1791	0.79	+0.0
1,814,873	+		GFF1791	0.83	-0.3
1,814,881	-		GFF1791	0.84	-1.1
1,814,881	-		GFF1791	0.84	-1.8
1,814,903	+		GFF1791	0.85	+0.5
1,814,903	+		GFF1791	0.85	+0.3
1,814,903	+		GFF1791	0.85	-0.2
1,814,909	+		GFF1791	0.86	+0.4
1,814,909	+		GFF1791	0.86	+0.9
1,814,909	+		GFF1791	0.86	+0.0
1,814,911	-		GFF1791	0.86	+0.6
1,814,911	-		GFF1791	0.86	+0.7
1,814,914	+		GFF1791	0.86	-0.1
1,814,917	-		GFF1791	0.86	+0.2
1,814,917	-		GFF1791	0.86	+0.6
1,814,917	-		GFF1791	0.86	-0.1
1,814,917	-		GFF1791	0.86	+0.1
1,814,917	-		GFF1791	0.86	+1.1
1,814,922	-		GFF1791	0.87	-1.3
1,814,922	-		GFF1791	0.87	+0.3
1,814,932	-		GFF1791	0.88	-1.1
1,814,959	-		GFF1791	0.90	-1.4
1,814,959	-		GFF1791	0.90	-1.9
1,814,964	-				+0.5
1,814,970	-				-1.6
1,814,973	+				-0.3
1,814,989	+				+0.5
1,815,004	-				-0.5
1,815,010	-				-2.2
1,815,010	-				-1.6
1,815,010	-				+0.1
1,815,010	-				+0.1
1,815,037	+				+0.1
1,815,037	+				-0.7
1,815,048	+				+0.4
1,815,056	-				+0.9
1,815,058	+				+1.0
1,815,066	-				-0.4
1,815,066	-				-0.2
1,815,081	-				-0.4
1,815,099	-				-1.6
1,815,105	+				+0.5
1,815,105	+				-0.7
1,815,105	+				+1.0
1,815,109	-				+0.0
1,815,125	+				-1.3
1,815,125	+				-0.4
1,815,138	-				-1.8
1,815,146	+				-0.1
1,815,178	-				+0.2
1,815,179	+				-0.2
1,815,183	-				-0.9
1,815,187	-				-0.4
1,815,187	-				-2.1
1,815,207	+				-0.2
1,815,237	-				-1.6
1,815,237	-				-0.7
1,815,242	+				+0.7
1,815,246	-				+1.3
1,815,254	-				-0.5
1,815,294	+		GFF1792	0.13	-0.6
1,815,294	+		GFF1792	0.13	-1.1
1,815,296	-		GFF1792	0.13	+0.3
1,815,302	-		GFF1792	0.14	+0.9
1,815,302	-		GFF1792	0.14	+1.5
1,815,303	-		GFF1792	0.14	+1.0
1,815,304	+		GFF1792	0.14	-0.5
1,815,362	+		GFF1792	0.20	-0.6
1,815,370	-		GFF1792	0.21	+1.4
1,815,390	+		GFF1792	0.23	-0.3
1,815,390	+		GFF1792	0.23	-1.3
1,815,397	-		GFF1792	0.24	+0.4
1,815,398	-		GFF1792	0.24	+0.1
1,815,398	-		GFF1792	0.24	+0.4
1,815,409	-		GFF1792	0.25	+0.3
1,815,409	-		GFF1792	0.25	-1.8
1,815,455	+		GFF1792	0.30	-1.2
1,815,459	+		GFF1792	0.30	+0.6
1,815,463	-		GFF1792	0.30	-0.1
1,815,469	-		GFF1792	0.31	+0.9
1,815,469	-		GFF1792	0.31	-1.4
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1,816,046	+				+0.6
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1,816,054	-				-0.8
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1,816,092	-				+0.0