Strain Fitness in Sphingobium sp. HT1-2 around GFF1789

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,810,005	+		GFF1787	0.36	+1.2
1,810,005	-		GFF1787	0.36	-0.9
1,810,006	+		GFF1787	0.36	-1.2
1,810,013	-		GFF1787	0.37	-0.8
1,810,013	-		GFF1787	0.37	-0.5
1,810,060	+		GFF1787	0.44	-0.7
1,810,068	-		GFF1787	0.45	+0.3
1,810,069	+		GFF1787	0.45	+0.9
1,810,077	-		GFF1787	0.46	-0.2
1,810,090	+		GFF1787	0.48	-0.9
1,810,109	+		GFF1787	0.50	+0.0
1,810,115	+		GFF1787	0.51	+0.2
1,810,115	+		GFF1787	0.51	+0.0
1,810,120	+		GFF1787	0.52	-0.6
1,810,139	-		GFF1787	0.54	-0.4
1,810,144	+		GFF1787	0.55	-0.7
1,810,149	+		GFF1787	0.56	-1.3
1,810,162	-		GFF1787	0.58	-1.7
1,810,171	+		GFF1787	0.59	-0.5
1,810,171	+		GFF1787	0.59	+0.9
1,810,171	+		GFF1787	0.59	-0.5
1,810,179	-		GFF1787	0.60	+0.5
1,810,179	-		GFF1787	0.60	-1.9
1,810,179	-		GFF1787	0.60	+0.2
1,810,179	-		GFF1787	0.60	-1.5
1,810,179	-		GFF1787	0.60	-0.7
1,810,179	-		GFF1787	0.60	+0.5
1,810,179	-		GFF1787	0.60	-0.1
1,810,179	-		GFF1787	0.60	-2.1
1,810,179	-		GFF1787	0.60	-0.9
1,810,179	-		GFF1787	0.60	-1.7
1,810,179	-		GFF1787	0.60	-0.5
1,810,179	-		GFF1787	0.60	-0.3
1,810,179	-		GFF1787	0.60	-0.6
1,810,179	-		GFF1787	0.60	+1.3
1,810,181	+		GFF1787	0.60	+1.0
1,810,208	-		GFF1787	0.64	-0.8
1,810,216	-		GFF1787	0.65	+0.1
1,810,243	-		GFF1787	0.69	-0.3
1,810,243	-		GFF1787	0.69	-0.2
1,810,243	-		GFF1787	0.69	-0.7
1,810,255	+		GFF1787	0.71	-0.6
1,810,263	-		GFF1787	0.72	+0.4
1,810,279	-		GFF1787	0.74	+0.2
1,810,310	-		GFF1787	0.78	-2.3
1,810,310	-		GFF1787	0.78	+0.2
1,810,310	-		GFF1787	0.78	+0.8
1,810,359	+		GFF1787	0.85	-1.2
1,810,369	+		GFF1787	0.86	-0.3
1,810,379	+		GFF1787	0.88	-0.6
1,810,384	+		GFF1787	0.88	-1.8
1,810,387	-		GFF1787	0.89	-1.0
1,810,433	+				-1.3
1,810,433	+				-2.3
1,810,433	+				-0.7
1,810,438	+				-1.5
1,810,441	-				-1.3
1,810,441	-				+0.3
1,810,441	-				-0.7
1,810,441	-				+0.3
1,810,446	-				-1.3
1,810,461	+				-1.3
1,810,466	+				+1.1
1,810,503	+				-2.3
1,810,511	-				+1.0
1,810,520	+				-1.3
1,810,522	-				-0.3
1,810,526	+				+0.3
1,810,548	+				+1.8
1,810,602	-		GFF1788	0.22	+0.9
1,810,618	+		GFF1788	0.27	-1.1
1,810,618	+		GFF1788	0.27	-1.8
1,810,618	+		GFF1788	0.27	+0.5
1,810,618	+		GFF1788	0.27	+0.9
1,810,618	+		GFF1788	0.27	-0.6
1,810,618	+		GFF1788	0.27	+1.2
1,810,626	-		GFF1788	0.29	-2.1
1,810,626	-		GFF1788	0.29	-0.1
1,810,626	-		GFF1788	0.29	+0.8
1,810,626	-		GFF1788	0.29	-2.1
1,810,626	-		GFF1788	0.29	-0.1
1,810,626	-		GFF1788	0.29	-0.1
1,810,626	-		GFF1788	0.29	-1.0
1,810,626	-		GFF1788	0.29	-0.4
1,810,632	+		GFF1788	0.31	-0.3
1,810,674	+		GFF1788	0.43	+0.0
1,810,709	+		GFF1788	0.53	-0.3
1,810,709	+		GFF1788	0.53	+0.6
1,810,709	+		GFF1788	0.53	+0.3
1,810,731	+		GFF1788	0.60	-0.5
1,810,762	-		GFF1788	0.69	-1.6
1,810,767	-		GFF1788	0.71	-1.0
1,810,767	-		GFF1788	0.71	+1.8
1,810,787	+		GFF1788	0.76	+0.7
1,810,789	+		GFF1788	0.77	+0.4
1,810,789	+		GFF1788	0.77	+0.7
1,810,789	+		GFF1788	0.77	-1.0
1,810,797	-		GFF1788	0.79	+0.8
1,810,802	+		GFF1788	0.81	+0.0
1,810,822	-		GFF1788	0.87	+0.7
1,810,824	+		GFF1788	0.87	+0.5
1,810,857	-				+0.1
1,810,859	+				-0.8
1,810,859	+				-0.4
1,810,869	-				-0.3
1,810,875	+				-0.2
1,810,875	+				+0.3
1,810,875	+				-0.8
1,810,875	+				-0.2
1,810,875	+				-0.7
1,810,875	+				-1.1
1,810,875	+				+0.7
1,810,875	+				-0.3
1,810,875	+				-0.3
1,810,875	+				+0.1
1,810,875	+				-0.3
1,810,875	+				-1.6
1,810,875	+				-2.6
1,810,875	+				-0.9
1,810,883	-				-0.9
1,810,883	-				-2.0
1,810,883	-				+1.4
1,810,883	-				-1.2
1,810,883	-				-1.3
1,810,883	-				-0.3
1,810,883	-				-2.1
1,810,883	-				+0.0
1,810,883	-				+0.7
1,810,883	-				-1.2
1,810,885	-				-0.8
1,810,893	-				+0.7
1,810,893	-				-0.8
1,810,900	+				+0.8
1,810,900	+				+0.3
1,810,940	+				-0.8
1,810,941	-				+0.4
1,810,941	-				-1.7
1,810,941	-				-1.4
1,810,946	+				-1.5
1,810,948	-				-1.9
1,810,948	-				+0.8
1,810,952	+				+0.8
1,810,960	-				-0.7
1,810,979	+				-0.8
1,810,998	+				-0.8
1,811,080	+		GFF1789	0.12	+0.1
1,811,097	+		GFF1789	0.15	+1.2
1,811,105	-		GFF1789	0.16	-0.6
1,811,110	-		GFF1789	0.17	+0.3
1,811,125	+		GFF1789	0.20	+0.7
1,811,137	+		GFF1789	0.21	+0.6
1,811,138	-		GFF1789	0.22	-0.5
1,811,145	-		GFF1789	0.23	-0.4
1,811,164	-		GFF1789	0.26	-1.8
1,811,164	-		GFF1789	0.26	-0.4
1,811,164	-		GFF1789	0.26	-2.0
1,811,187	-		GFF1789	0.29	-1.5
1,811,197	-		GFF1789	0.31	-0.4
1,811,197	-		GFF1789	0.31	-0.9
1,811,205	+		GFF1789	0.32	-0.5
1,811,213	-		GFF1789	0.33	-0.2
1,811,213	-		GFF1789	0.33	+0.8
1,811,222	+		GFF1789	0.35	-0.5
1,811,227	+		GFF1789	0.36	-0.8
1,811,227	+		GFF1789	0.36	-1.3
1,811,230	-		GFF1789	0.36	-1.3
1,811,230	-		GFF1789	0.36	-0.4
1,811,235	-		GFF1789	0.37	+0.1
1,811,240	-		GFF1789	0.38	-0.3
1,811,240	-		GFF1789	0.38	-1.4
1,811,250	+		GFF1789	0.39	+1.0
1,811,276	+		GFF1789	0.43	-2.0
1,811,276	+		GFF1789	0.43	-0.1
1,811,284	+		GFF1789	0.45	-0.1
1,811,284	+		GFF1789	0.45	-1.0
1,811,284	-		GFF1789	0.45	+0.3
1,811,292	-		GFF1789	0.46	-0.6
1,811,292	-		GFF1789	0.46	-1.4
1,811,292	-		GFF1789	0.46	-0.2
1,811,292	-		GFF1789	0.46	-1.7
1,811,292	-		GFF1789	0.46	-1.2
1,811,292	-		GFF1789	0.46	+0.5
1,811,294	-		GFF1789	0.46	-1.0
1,811,294	-		GFF1789	0.46	-1.1
1,811,341	+		GFF1789	0.54	-1.8
1,811,341	+		GFF1789	0.54	+0.9
1,811,341	+		GFF1789	0.54	+0.9
1,811,341	+		GFF1789	0.54	-0.0
1,811,341	+		GFF1789	0.54	-1.2
1,811,341	+		GFF1789	0.54	+0.7
1,811,349	-		GFF1789	0.55	+0.2
1,811,349	-		GFF1789	0.55	-1.0
1,811,349	-		GFF1789	0.55	-0.6
1,811,349	-		GFF1789	0.55	+0.9
1,811,349	-		GFF1789	0.55	+0.6
1,811,349	-		GFF1789	0.55	-1.0
1,811,349	-		GFF1789	0.55	+0.5
1,811,351	+		GFF1789	0.55	-0.8
1,811,362	+		GFF1789	0.57	+0.0
1,811,370	-		GFF1789	0.58	+0.0
1,811,384	+		GFF1789	0.61	-0.8
1,811,388	-		GFF1789	0.61	-1.4
1,811,388	-		GFF1789	0.61	-0.3
1,811,411	-		GFF1789	0.65	+0.7
1,811,424	+		GFF1789	0.67	-0.2
1,811,438	+		GFF1789	0.69	-0.2
1,811,503	-		GFF1789	0.79	-1.0
1,811,504	+		GFF1789	0.79	-1.5
1,811,504	+		GFF1789	0.79	-0.5
1,811,508	-		GFF1789	0.80	+0.1
1,811,548	-		GFF1789	0.86	-0.1
1,811,557	+		GFF1789	0.88	-2.1
1,811,557	+		GFF1789	0.88	+0.2
1,811,557	+		GFF1789	0.88	+0.5
1,811,557	+		GFF1789	0.88	-0.8
1,811,560	-		GFF1789	0.88	-0.9
1,811,560	-		GFF1789	0.88	+0.0
1,811,565	-		GFF1789	0.89	-0.3
1,811,565	-		GFF1789	0.89	+0.9
1,811,565	-		GFF1789	0.89	+1.8
1,811,565	-		GFF1789	0.89	+1.2
1,811,565	-		GFF1789	0.89	+0.7
1,811,577	-				+0.5
1,811,577	-				-0.5
1,811,616	-				+1.5
1,811,622	+				+0.5
1,811,662	+				+0.2
1,811,662	+				-0.4
1,811,662	+				-0.3
1,811,662	+				-1.2
1,811,670	-				-0.1
1,811,675	-				-0.9
1,811,693	-				-1.6
1,811,709	+				-0.5
1,811,717	-				+0.7
1,811,749	+				+0.4
1,811,750	+				+0.5
1,811,753	-				-0.1
1,811,758	-				-2.1
1,811,775	+				+0.5
1,811,783	-				-2.1
1,811,791	-				+1.4
1,811,793	-				-0.7
1,811,821	-				-0.3
1,811,826	-				+0.9
1,811,826	-				+0.0
1,811,832	+				+0.1
1,811,850	-				+0.5
1,811,877	-				-0.1
1,811,877	-				+0.6
1,811,884	+				-1.2
1,811,885	+				+0.9
1,811,925	-				-0.4
1,811,939	-				-0.7
1,811,949	-				+0.3
1,811,949	-				+0.5
1,811,969	+				-0.8
1,811,972	-				-0.7
1,811,976	+				+0.0
1,811,981	+				+0.3
1,811,981	+				-0.2
1,811,981	+				+0.2
1,811,981	+				-0.9
1,811,981	+				-0.6
1,811,981	+				-0.9
1,811,981	+				-0.3
1,811,981	+				-1.7
1,811,989	-				-0.6
1,811,989	-				+0.1
1,811,989	-				-0.2
1,811,989	-				-0.5
1,811,989	-				-1.3
1,811,989	-				-0.5
1,811,989	-				-0.1
1,812,001	-				+1.2
1,812,001	-				-0.6
1,812,005	-				-0.2
1,812,077	+				-0.5
1,812,077	+				-0.1
1,812,079	+				-0.2
1,812,085	+				+0.5
1,812,090	+				+1.9
1,812,097	+				-0.8
1,812,097	+				-2.4
1,812,097	+				-1.1
1,812,097	+				-0.2
1,812,123	-				-0.7
1,812,132	+				-0.3
1,812,160	+				-0.5
1,812,165	+				-0.2
1,812,173	-				-2.4
1,812,173	-				+0.5
1,812,201	+				+1.0
1,812,201	+				-1.7
1,812,209	-				-0.3
1,812,209	-				-0.1
1,812,213	+				-0.1
1,812,222	+				-0.5
1,812,229	+				-1.6
1,812,235	-				+0.3
1,812,243	+				-0.2
1,812,280	+				-1.1
1,812,286	-				-0.8
1,812,288	-				-1.0
1,812,289	+				-2.1
1,812,289	+				+0.7
1,812,289	+				+0.0
1,812,289	+				+1.2
1,812,289	+				-1.8
1,812,289	+				+0.4
1,812,289	+				-1.1
1,812,297	-				-0.4
1,812,297	-				-0.5
1,812,326	-				-1.1
1,812,335	+				+0.2
1,812,335	+				+0.5
1,812,337	+				+0.0
1,812,337	+				-1.3
1,812,337	+				-0.4
1,812,337	+				-0.2
1,812,337	+				+0.7
1,812,337	+				-1.4
1,812,337	+				-1.4
1,812,337	+				-2.7
1,812,337	+				-0.4
1,812,337	+				-0.2
1,812,337	+				+0.9
1,812,337	+				-1.5
1,812,345	-				+0.2
1,812,345	-				+0.7
1,812,345	-				-1.5
1,812,345	-				+1.0
1,812,345	-				-0.7
1,812,345	-				-1.2
1,812,345	-				+1.1
1,812,345	-				-0.1
1,812,345	-				+1.0
1,812,345	-				-0.5
1,812,345	-				-0.4
1,812,345	-				+1.0
1,812,345	-				-2.0
1,812,345	-				-1.4
1,812,345	-				+0.5
1,812,345	-				+0.9
1,812,345	-				-0.8
1,812,347	+				+0.4
1,812,350	-				-1.6
1,812,358	-				-1.7
1,812,372	+				-1.3
1,812,372	+				-1.0
1,812,372	+				+0.1
1,812,372	+				+0.1
1,812,380	-				+0.1
1,812,380	-				-0.2
1,812,380	-				-0.2
1,812,380	-				-1.5
1,812,391	+				-1.8
1,812,394	+				+0.0
1,812,402	-				-0.6
1,812,406	+				-1.9
1,812,411	+				+0.1
1,812,414	-		GFF1790	0.10	-0.8
1,812,429	+		GFF1790	0.11	+0.6
1,812,436	+		GFF1790	0.12	-1.3
1,812,460	+		GFF1790	0.14	+0.1
1,812,460	+		GFF1790	0.14	-1.0
1,812,460	+		GFF1790	0.14	+0.3
1,812,460	+		GFF1790	0.14	-2.3
1,812,460	+		GFF1790	0.14	-1.2
1,812,460	+		GFF1790	0.14	-0.9
1,812,460	+		GFF1790	0.14	-2.0
1,812,460	+		GFF1790	0.14	-1.8
1,812,460	+		GFF1790	0.14	+0.7
1,812,460	+		GFF1790	0.14	+0.2
1,812,460	+		GFF1790	0.14	+2.0
1,812,460	+		GFF1790	0.14	+0.0
1,812,460	+		GFF1790	0.14	+0.5
1,812,460	+		GFF1790	0.14	+0.7
1,812,460	+		GFF1790	0.14	+1.1
1,812,460	+		GFF1790	0.14	-1.6
1,812,460	+		GFF1790	0.14	-0.9
1,812,463	-		GFF1790	0.14	+0.5
1,812,468	-		GFF1790	0.14	-0.8
1,812,468	-		GFF1790	0.14	+0.2
1,812,468	-		GFF1790	0.14	-0.8
1,812,468	-		GFF1790	0.14	-1.3
1,812,468	-		GFF1790	0.14	+1.6
1,812,468	-		GFF1790	0.14	+0.1
1,812,468	-		GFF1790	0.14	-1.9
1,812,468	-		GFF1790	0.14	-2.3
1,812,468	-		GFF1790	0.14	-0.1
1,812,468	-		GFF1790	0.14	+1.1
1,812,496	+		GFF1790	0.16	-0.4
1,812,496	+		GFF1790	0.16	+0.0
1,812,496	+		GFF1790	0.16	-0.9
1,812,496	+		GFF1790	0.16	-1.7
1,812,496	+		GFF1790	0.16	-1.1
1,812,504	-		GFF1790	0.17	-0.7
1,812,504	-		GFF1790	0.17	-3.0
1,812,504	-		GFF1790	0.17	-0.2
1,812,504	-		GFF1790	0.17	+1.1
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