Strain Fitness in Sphingobium sp. HT1-2 around GFF1664

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,692,143	+		GFF1663	0.22	-0.2
1,692,143	+		GFF1663	0.22	-0.3
1,692,143	+		GFF1663	0.22	+1.1
1,692,149	-		GFF1663	0.23	+0.9
1,692,151	-		GFF1663	0.23	+0.5
1,692,172	-		GFF1663	0.25	-2.6
1,692,212	+		GFF1663	0.28	-0.5
1,692,220	-		GFF1663	0.29	-0.8
1,692,245	+		GFF1663	0.31	-0.7
1,692,253	-		GFF1663	0.31	+1.0
1,692,256	+		GFF1663	0.32	+0.7
1,692,256	+		GFF1663	0.32	-0.8
1,692,256	+		GFF1663	0.32	+0.2
1,692,256	+		GFF1663	0.32	+0.9
1,692,264	-		GFF1663	0.32	+0.7
1,692,264	-		GFF1663	0.32	+1.0
1,692,264	-		GFF1663	0.32	-0.3
1,692,264	-		GFF1663	0.32	-2.3
1,692,264	-		GFF1663	0.32	+1.2
1,692,264	-		GFF1663	0.32	-0.1
1,692,264	-		GFF1663	0.32	-1.8
1,692,301	+		GFF1663	0.35	+0.5
1,692,306	+		GFF1663	0.36	-0.5
1,692,309	-		GFF1663	0.36	+0.2
1,692,309	-		GFF1663	0.36	+0.0
1,692,314	-		GFF1663	0.37	-0.7
1,692,314	-		GFF1663	0.37	-0.8
1,692,324	+		GFF1663	0.37	-1.3
1,692,324	+		GFF1663	0.37	-1.0
1,692,324	+		GFF1663	0.37	-0.4
1,692,324	+		GFF1663	0.37	+0.0
1,692,324	+		GFF1663	0.37	+0.3
1,692,324	+		GFF1663	0.37	+0.1
1,692,324	+		GFF1663	0.37	-0.6
1,692,331	-		GFF1663	0.38	+1.4
1,692,332	-		GFF1663	0.38	+0.1
1,692,332	-		GFF1663	0.38	-1.4
1,692,332	-		GFF1663	0.38	-1.0
1,692,332	-		GFF1663	0.38	-0.9
1,692,332	-		GFF1663	0.38	-0.1
1,692,332	-		GFF1663	0.38	+0.3
1,692,332	-		GFF1663	0.38	-2.5
1,692,332	-		GFF1663	0.38	-0.0
1,692,332	-		GFF1663	0.38	-1.6
1,692,332	-		GFF1663	0.38	-0.1
1,692,363	-		GFF1663	0.41	-0.5
1,692,367	-		GFF1663	0.41	-2.1
1,692,410	+		GFF1663	0.45	-1.2
1,692,412	+		GFF1663	0.45	-0.1
1,692,412	+		GFF1663	0.45	-0.5
1,692,412	+		GFF1663	0.45	-1.8
1,692,413	-		GFF1663	0.45	+0.0
1,692,413	-		GFF1663	0.45	-0.3
1,692,428	+		GFF1663	0.46	-0.6
1,692,446	-		GFF1663	0.48	-1.3
1,692,461	+		GFF1663	0.49	+1.7
1,692,461	+		GFF1663	0.49	-0.4
1,692,461	+		GFF1663	0.49	+1.1
1,692,461	+		GFF1663	0.49	+0.0
1,692,469	-		GFF1663	0.49	+0.6
1,692,469	-		GFF1663	0.49	-1.1
1,692,490	-		GFF1663	0.51	+0.4
1,692,503	+		GFF1663	0.52	-1.1
1,692,503	+		GFF1663	0.52	+0.9
1,692,503	+		GFF1663	0.52	-1.0
1,692,503	+		GFF1663	0.52	-0.6
1,692,503	+		GFF1663	0.52	+0.6
1,692,508	+		GFF1663	0.53	+0.2
1,692,508	+		GFF1663	0.53	-0.4
1,692,508	+		GFF1663	0.53	-0.1
1,692,508	+		GFF1663	0.53	-2.8
1,692,511	-		GFF1663	0.53	-0.5
1,692,516	+		GFF1663	0.53	-0.2
1,692,516	+		GFF1663	0.53	-0.4
1,692,516	+		GFF1663	0.53	-0.5
1,692,516	+		GFF1663	0.53	-0.3
1,692,516	-		GFF1663	0.53	-0.5
1,692,516	-		GFF1663	0.53	-0.8
1,692,548	+		GFF1663	0.56	-0.4
1,692,554	+		GFF1663	0.57	+0.7
1,692,555	+		GFF1663	0.57	-0.1
1,692,555	+		GFF1663	0.57	+1.0
1,692,555	+		GFF1663	0.57	-0.2
1,692,555	+		GFF1663	0.57	-0.9
1,692,555	+		GFF1663	0.57	+0.5
1,692,555	+		GFF1663	0.57	+0.0
1,692,555	+		GFF1663	0.57	+0.4
1,692,555	+		GFF1663	0.57	+1.3
1,692,562	+		GFF1663	0.57	-1.3
1,692,563	-		GFF1663	0.57	-1.1
1,692,563	-		GFF1663	0.57	+0.7
1,692,563	-		GFF1663	0.57	-0.8
1,692,563	-		GFF1663	0.57	-0.1
1,692,563	-		GFF1663	0.57	-0.3
1,692,563	-		GFF1663	0.57	+1.3
1,692,563	-		GFF1663	0.57	+0.0
1,692,563	-		GFF1663	0.57	+0.5
1,692,563	-		GFF1663	0.57	+0.7
1,692,563	-		GFF1663	0.57	-1.5
1,692,577	-		GFF1663	0.58	-1.6
1,692,580	+		GFF1663	0.59	-1.3
1,692,599	+		GFF1663	0.60	-0.5
1,692,615	-		GFF1663	0.62	-0.1
1,692,615	-		GFF1663	0.62	-1.4
1,692,631	+		GFF1663	0.63	+0.0
1,692,631	+		GFF1663	0.63	-1.8
1,692,631	+		GFF1663	0.63	-1.3
1,692,636	+		GFF1663	0.63	+0.2
1,692,639	-		GFF1663	0.64	-1.3
1,692,649	-		GFF1663	0.64	-1.1
1,692,667	+		GFF1663	0.66	-1.8
1,692,682	+		GFF1663	0.67	-0.1
1,692,682	+		GFF1663	0.67	-0.6
1,692,682	+		GFF1663	0.67	-0.6
1,692,687	+		GFF1663	0.68	+0.0
1,692,687	+		GFF1663	0.68	-1.0
1,692,690	+		GFF1663	0.68	-1.3
1,692,692	+		GFF1663	0.68	-1.3
1,692,694	+		GFF1663	0.68	-0.1
1,692,722	-		GFF1663	0.71	+0.2
1,692,724	-		GFF1663	0.71	+0.5
1,692,741	+		GFF1663	0.72	-0.4
1,692,741	-		GFF1663	0.72	-0.2
1,692,746	-		GFF1663	0.73	+0.1
1,692,749	-		GFF1663	0.73	-1.1
1,692,749	-		GFF1663	0.73	-0.1
1,692,772	+		GFF1663	0.75	-2.2
1,692,772	+		GFF1663	0.75	+0.1
1,692,772	+		GFF1663	0.75	-2.2
1,692,778	+		GFF1663	0.75	+0.1
1,692,780	-		GFF1663	0.75	+1.1
1,692,780	-		GFF1663	0.75	-0.5
1,692,780	-		GFF1663	0.75	-0.4
1,692,780	-		GFF1663	0.75	-1.4
1,692,839	+		GFF1663	0.80	-0.1
1,692,871	+		GFF1663	0.83	+0.1
1,692,877	-		GFF1663	0.84	-1.8
1,692,879	+		GFF1663	0.84	-0.1
1,692,879	+		GFF1663	0.84	+0.7
1,692,879	+		GFF1663	0.84	-0.0
1,692,879	+		GFF1663	0.84	-1.5
1,692,879	+		GFF1663	0.84	-0.4
1,692,879	-		GFF1663	0.84	-0.5
1,692,881	+		GFF1663	0.84	-1.9
1,692,881	+		GFF1663	0.84	+1.6
1,692,887	-		GFF1663	0.84	+0.1
1,692,887	-		GFF1663	0.84	+0.5
1,692,887	-		GFF1663	0.84	-1.1
1,692,887	-		GFF1663	0.84	-2.3
1,692,887	-		GFF1663	0.84	-2.1
1,692,889	-		GFF1663	0.85	-1.1
1,692,892	+		GFF1663	0.85	+0.8
1,692,899	-		GFF1663	0.85	-0.7
1,692,899	-		GFF1663	0.85	+0.6
1,692,899	-		GFF1663	0.85	-1.0
1,692,901	+		GFF1663	0.86	-0.0
1,692,916	+		GFF1663	0.87	+0.4
1,692,924	-		GFF1663	0.87	-0.6
1,692,924	-		GFF1663	0.87	-2.0
1,692,949	+		GFF1663	0.90	+0.5
1,692,949	+		GFF1663	0.90	-0.6
1,692,949	+		GFF1663	0.90	-1.5
1,692,954	+				+0.3
1,692,956	-				-1.6
1,692,959	+				-1.1
1,692,959	+				-0.7
1,692,959	+				+1.6
1,692,960	+				-1.1
1,692,964	+				-1.5
1,693,037	+				+0.4
1,693,037	+				-0.3
1,693,045	-				-2.0
1,693,050	-				+0.5
1,693,064	-				-0.2
1,693,081	-				-1.3
1,693,085	-				-0.3
1,693,099	+				-1.0
1,693,099	+				+0.0
1,693,099	+				-1.8
1,693,099	+				-0.8
1,693,107	-				+1.0
1,693,127	+				-0.5
1,693,128	-				-0.9
1,693,138	+				-1.1
1,693,141	+				-1.6
1,693,162	+				-0.1
1,693,170	-				-1.8
1,693,191	-				+0.5
1,693,193	+				-0.2
1,693,201	-				-1.7
1,693,201	-				-2.3
1,693,201	-				-0.0
1,693,237	+		GFF1664	0.11	-1.4
1,693,237	+		GFF1664	0.11	+0.2
1,693,239	-		GFF1664	0.11	+0.7
1,693,244	-		GFF1664	0.11	-1.8
1,693,245	-		GFF1664	0.12	-1.3
1,693,245	-		GFF1664	0.12	-0.4
1,693,261	+		GFF1664	0.13	+0.9
1,693,282	+		GFF1664	0.15	+0.0
1,693,282	+		GFF1664	0.15	+0.5
1,693,282	+		GFF1664	0.15	-0.9
1,693,289	+		GFF1664	0.15	-0.2
1,693,289	+		GFF1664	0.15	-0.8
1,693,303	-		GFF1664	0.17	+0.4
1,693,305	+		GFF1664	0.17	-1.2
1,693,313	-		GFF1664	0.18	-0.3
1,693,358	+		GFF1664	0.21	-0.8
1,693,363	+		GFF1664	0.22	+0.6
1,693,363	+		GFF1664	0.22	-1.4
1,693,363	+		GFF1664	0.22	+0.5
1,693,363	+		GFF1664	0.22	+1.4
1,693,363	+		GFF1664	0.22	+1.2
1,693,363	+		GFF1664	0.22	-0.6
1,693,363	+		GFF1664	0.22	+0.6
1,693,363	+		GFF1664	0.22	-2.3
1,693,364	-		GFF1664	0.22	-0.4
1,693,366	-		GFF1664	0.22	-0.7
1,693,366	-		GFF1664	0.22	-1.2
1,693,371	-		GFF1664	0.23	+2.0
1,693,371	-		GFF1664	0.23	+0.3
1,693,371	-		GFF1664	0.23	-0.8
1,693,397	+		GFF1664	0.25	+0.2
1,693,397	+		GFF1664	0.25	+0.5
1,693,397	+		GFF1664	0.25	-0.3
1,693,397	+		GFF1664	0.25	+1.5
1,693,405	-		GFF1664	0.26	-1.3
1,693,405	-		GFF1664	0.26	+0.6
1,693,405	-		GFF1664	0.26	-0.6
1,693,405	-		GFF1664	0.26	-1.1
1,693,405	-		GFF1664	0.26	-2.3
1,693,405	-		GFF1664	0.26	+0.2
1,693,405	-		GFF1664	0.26	-0.1
1,693,405	-		GFF1664	0.26	-0.2
1,693,405	-		GFF1664	0.26	-0.1
1,693,409	+		GFF1664	0.26	-1.2
1,693,409	-		GFF1664	0.26	-0.1
1,693,414	+		GFF1664	0.26	+0.6
1,693,433	+		GFF1664	0.28	+0.3
1,693,433	+		GFF1664	0.28	-0.1
1,693,433	+		GFF1664	0.28	+1.6
1,693,441	-		GFF1664	0.29	-2.3
1,693,442	+		GFF1664	0.29	-1.0
1,693,514	+		GFF1664	0.35	+0.8
1,693,522	+		GFF1664	0.36	+0.2
1,693,524	+		GFF1664	0.36	-2.5
1,693,532	-		GFF1664	0.37	-1.3
1,693,533	+		GFF1664	0.37	-2.1
1,693,538	+		GFF1664	0.37	-0.7
1,693,541	+		GFF1664	0.38	+0.7
1,693,541	-		GFF1664	0.38	+0.9
1,693,551	-		GFF1664	0.38	-1.6
1,693,566	+		GFF1664	0.40	-1.3
1,693,578	+		GFF1664	0.41	-0.9
1,693,583	+		GFF1664	0.41	+0.8
1,693,583	+		GFF1664	0.41	-0.3
1,693,586	-		GFF1664	0.42	+1.0
1,693,586	-		GFF1664	0.42	-0.3
1,693,586	-		GFF1664	0.42	-0.7
1,693,586	-		GFF1664	0.42	+0.9
1,693,596	-		GFF1664	0.42	+0.7
1,693,631	+		GFF1664	0.45	-0.1
1,693,669	+		GFF1664	0.49	-1.7
1,693,713	-		GFF1664	0.53	-1.1
1,693,744	+		GFF1664	0.55	+0.3
1,693,773	+		GFF1664	0.58	-1.8
1,693,776	-		GFF1664	0.58	-0.9
1,693,776	-		GFF1664	0.58	-1.0
1,693,776	-		GFF1664	0.58	+0.1
1,693,781	-		GFF1664	0.59	-1.1
1,693,792	+		GFF1664	0.60	+0.6
1,693,795	-		GFF1664	0.60	-0.9
1,693,797	+		GFF1664	0.60	+0.2
1,693,797	+		GFF1664	0.60	-0.8
1,693,797	+		GFF1664	0.60	-1.4
1,693,797	+		GFF1664	0.60	+0.3
1,693,797	+		GFF1664	0.60	+0.1
1,693,797	+		GFF1664	0.60	-0.3
1,693,797	+		GFF1664	0.60	+0.7
1,693,805	-		GFF1664	0.61	-0.2
1,693,805	-		GFF1664	0.61	-0.1
1,693,833	+		GFF1664	0.63	+0.0
1,693,836	-		GFF1664	0.64	+0.5
1,693,864	+		GFF1664	0.66	-0.4
1,693,866	+		GFF1664	0.66	-1.3
1,693,877	+		GFF1664	0.67	-0.5
1,693,877	+		GFF1664	0.67	+0.3
1,693,885	+		GFF1664	0.68	-1.1
1,693,893	-		GFF1664	0.69	-0.3
1,693,893	-		GFF1664	0.69	+0.8
1,693,893	-		GFF1664	0.69	+0.7
1,693,907	-		GFF1664	0.70	+0.5
1,693,931	+		GFF1664	0.72	+0.6
1,693,946	-		GFF1664	0.73	+0.2
1,693,952	+		GFF1664	0.74	-1.8
1,693,952	+		GFF1664	0.74	+1.2
1,693,952	+		GFF1664	0.74	-0.7
1,693,952	+		GFF1664	0.74	+0.7
1,693,952	+		GFF1664	0.74	+0.3
1,693,952	+		GFF1664	0.74	+0.2
1,693,952	+		GFF1664	0.74	-1.3
1,693,952	+		GFF1664	0.74	-0.0
1,693,952	+		GFF1664	0.74	+0.4
1,693,960	-		GFF1664	0.74	-1.7
1,693,960	-		GFF1664	0.74	+1.0
1,693,960	-		GFF1664	0.74	-2.0
1,693,960	-		GFF1664	0.74	-0.5
1,693,967	+		GFF1664	0.75	+1.6
1,693,967	+		GFF1664	0.75	-1.1
1,693,972	+		GFF1664	0.75	-1.0
1,693,977	+		GFF1664	0.76	-1.3
1,693,985	-		GFF1664	0.77	+0.3
1,693,985	-		GFF1664	0.77	-0.3
1,693,985	-		GFF1664	0.77	+0.3
1,693,986	-		GFF1664	0.77	+1.7
1,693,986	-		GFF1664	0.77	-0.3
1,693,990	-		GFF1664	0.77	-0.0
1,693,995	-		GFF1664	0.77	-2.2
1,693,995	-		GFF1664	0.77	-0.7
1,694,018	-		GFF1664	0.80	-0.8
1,694,030	-		GFF1664	0.81	-1.8
1,694,032	+		GFF1664	0.81	+0.5
1,694,052	-		GFF1664	0.82	+0.3
1,694,065	-		GFF1664	0.84	-1.3
1,694,093	+		GFF1664	0.86	+0.3
1,694,099	+		GFF1664	0.87	+0.3
1,694,101	+		GFF1664	0.87	-0.8
1,694,118	+		GFF1664	0.88	-0.8
1,694,122	+		GFF1664	0.89	+0.2
1,694,127	+		GFF1664	0.89	+0.6
1,694,135	-		GFF1664	0.90	-2.0
1,694,145	-				-0.2
1,694,145	-				+1.2
1,694,176	+				-0.1
1,694,176	+				-0.1
1,694,179	-				+1.1
1,694,184	-				-1.1
1,694,184	-				-0.3
1,694,184	-				+0.2
1,694,191	-				+0.6
1,694,205	-				-2.1
1,694,210	+				-1.3
1,694,210	+				-1.0
1,694,225	+				-1.6
1,694,225	+				+0.4
1,694,233	-				-0.4
1,694,243	-				-0.2
1,694,308	+				+0.3
1,694,320	-				-0.5
1,694,322	+				-1.6
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