Strain Fitness in Sphingobium sp. HT1-2 around GFF1652

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,676,608	-		GFF1651	0.57	-0.3
1,676,625	+		GFF1651	0.58	+1.3
1,676,635	+		GFF1651	0.58	-2.2
1,676,641	-		GFF1651	0.59	+0.3
1,676,643	-		GFF1651	0.59	-0.5
1,676,644	-		GFF1651	0.59	+0.9
1,676,697	-		GFF1651	0.62	+0.7
1,676,707	-		GFF1651	0.62	-0.2
1,676,707	-		GFF1651	0.62	-0.8
1,676,707	-		GFF1651	0.62	-0.8
1,676,780	-		GFF1651	0.66	-2.4
1,676,819	+		GFF1651	0.69	-0.5
1,676,838	-		GFF1651	0.70	+1.3
1,676,875	+		GFF1651	0.72	-0.4
1,676,900	+		GFF1651	0.73	-1.6
1,676,900	+		GFF1651	0.73	-0.8
1,676,900	+		GFF1651	0.73	+0.3
1,676,900	+		GFF1651	0.73	+0.7
1,676,900	+		GFF1651	0.73	+0.6
1,676,908	+		GFF1651	0.74	-0.3
1,676,908	+		GFF1651	0.74	-2.1
1,676,908	-		GFF1651	0.74	-2.5
1,676,985	-		GFF1651	0.78	-0.1
1,676,985	-		GFF1651	0.78	-0.7
1,677,002	-		GFF1651	0.79	-0.6
1,677,013	+		GFF1651	0.79	-1.6
1,677,050	+		GFF1651	0.81	-1.5
1,677,050	+		GFF1651	0.81	-1.0
1,677,054	-		GFF1651	0.82	-2.5
1,677,058	-		GFF1651	0.82	+0.0
1,677,067	+		GFF1651	0.82	+0.6
1,677,071	+		GFF1651	0.83	-0.5
1,677,107	-		GFF1651	0.85	-1.6
1,677,167	+		GFF1651	0.88	-0.9
1,677,172	-		GFF1651	0.88	+0.1
1,677,172	-		GFF1651	0.88	-0.5
1,677,175	-		GFF1651	0.88	-0.0
1,677,181	-		GFF1651	0.89	-0.8
1,677,224	+				-0.1
1,677,275	-				+1.0
1,677,305	-				+0.7
1,677,329	+				-0.2
1,677,329	+				+0.4
1,677,329	+				-2.2
1,677,337	-				+0.3
1,677,337	-				-0.9
1,677,337	-				-0.1
1,677,337	-				+1.0
1,677,337	-				+1.2
1,677,337	-				-0.8
1,677,337	-				-2.8
1,677,368	-				-0.8
1,677,372	+				+0.3
1,677,374	+				-0.1
1,677,382	-				-0.0
1,677,408	+				-2.1
1,677,413	+				-0.5
1,677,413	+				+1.6
1,677,413	+				+1.2
1,677,413	+				+0.7
1,677,413	+				-0.5
1,677,413	+				-1.0
1,677,413	+				+0.6
1,677,413	+				-0.7
1,677,413	+				+1.5
1,677,413	+				-0.0
1,677,413	+				+0.2
1,677,421	-				+0.1
1,677,421	-				+0.2
1,677,421	-				-0.7
1,677,421	-				-1.0
1,677,463	-				+0.5
1,677,463	-				+0.1
1,677,510	-				+0.3
1,677,557	+				-1.4
1,677,602	-				+0.5
1,677,604	+				+0.3
1,677,604	+				-0.5
1,677,610	-				+1.1
1,677,620	+				+1.5
1,677,620	+				+0.3
1,677,633	-				+0.7
1,677,633	-				+0.1
1,677,666	+				-0.6
1,677,669	-				+0.1
1,677,674	-				+1.6
1,677,674	-				-1.0
1,677,691	-		GFF1652	0.10	+0.4
1,677,694	+		GFF1652	0.10	+0.8
1,677,781	+		GFF1652	0.20	+0.2
1,677,827	+		GFF1652	0.25	-0.5
1,677,827	+		GFF1652	0.25	-2.4
1,677,835	-		GFF1652	0.25	-0.8
1,677,837	+		GFF1652	0.26	+0.5
1,677,861	-		GFF1652	0.28	-2.0
1,677,863	+		GFF1652	0.28	-1.5
1,677,871	-		GFF1652	0.29	+1.9
1,677,876	+		GFF1652	0.30	+0.3
1,677,944	+		GFF1652	0.37	+0.2
1,677,987	-		GFF1652	0.42	+0.3
1,677,987	-		GFF1652	0.42	+0.8
1,678,031	-		GFF1652	0.46	+0.3
1,678,078	+		GFF1652	0.51	-0.4
1,678,089	-		GFF1652	0.52	+0.4
1,678,101	+		GFF1652	0.54	-0.5
1,678,129	+		GFF1652	0.57	+0.8
1,678,132	-		GFF1652	0.57	+0.7
1,678,153	+		GFF1652	0.59	-1.5
1,678,153	+		GFF1652	0.59	+2.1
1,678,153	+		GFF1652	0.59	-1.1
1,678,161	-		GFF1652	0.60	-0.5
1,678,161	-		GFF1652	0.60	+0.5
1,678,210	-		GFF1652	0.65	+0.7
1,678,261	-		GFF1652	0.71	+1.0
1,678,273	+		GFF1652	0.72	+0.3
1,678,286	-		GFF1652	0.73	-0.3
1,678,286	-		GFF1652	0.73	+0.1
1,678,308	+		GFF1652	0.76	+1.7
1,678,316	-		GFF1652	0.76	-1.0
1,678,316	-		GFF1652	0.76	-0.4
1,678,316	-		GFF1652	0.76	+0.4
1,678,339	+		GFF1652	0.79	+0.3
1,678,357	-		GFF1652	0.81	-2.0
1,678,419	+		GFF1652	0.87	+0.1
1,678,448	-				+0.3
1,678,456	+				+0.8
1,678,456	+				-0.8
1,678,483	-				+0.2
1,678,496	-				-0.5
1,678,507	+				-1.4
1,678,517	+				-1.0
1,678,517	+				+0.6
1,678,535	+				+0.6
1,678,600	-				-0.4
1,678,637	-				+0.6
1,678,749	+		GFF1653	0.11	-1.0
1,678,749	+		GFF1653	0.11	-0.7
1,678,774	-		GFF1653	0.16	+0.5
1,678,803	-		GFF1653	0.22	-0.4
1,678,817	-		GFF1653	0.25	+0.3
1,678,837	+		GFF1653	0.29	-0.4
1,678,837	+		GFF1653	0.29	+0.3
1,678,841	+		GFF1653	0.29	-0.7
1,678,847	+		GFF1653	0.31	-0.2
1,678,848	+		GFF1653	0.31	+0.1
1,678,896	+		GFF1653	0.40	-0.5
1,678,921	+		GFF1653	0.45	-0.4
1,678,921	+		GFF1653	0.45	+0.8
1,678,921	+		GFF1653	0.45	-0.9
1,678,929	-		GFF1653	0.47	-1.7
1,678,929	-		GFF1653	0.47	+1.6
1,678,929	-		GFF1653	0.47	-0.7
1,678,929	-		GFF1653	0.47	-1.1
1,678,929	-		GFF1653	0.47	+0.4
1,678,929	-		GFF1653	0.47	+1.8
1,678,929	-		GFF1653	0.47	-0.2
1,678,929	-		GFF1653	0.47	-1.0
1,678,929	-		GFF1653	0.47	+0.1
1,678,938	+		GFF1653	0.49	-1.0
1,678,946	-		GFF1653	0.50	-1.0
1,678,946	-		GFF1653	0.50	-1.6
1,678,946	-		GFF1653	0.50	-0.7
1,678,991	+		GFF1653	0.59	-0.0
1,679,002	+		GFF1653	0.61	+1.2
1,679,057	-		GFF1653	0.72	-0.5
1,679,057	-		GFF1653	0.72	-1.1
1,679,069	+		GFF1653	0.74	+0.5
1,679,096	+		GFF1653	0.80	-2.2
1,679,104	-		GFF1653	0.81	-0.2
1,679,104	-		GFF1653	0.81	-0.7
1,679,104	-		GFF1653	0.81	+0.9
1,679,114	-		GFF1653	0.83	-0.3
1,679,161	+				-0.6
1,679,161	+				-0.3
1,679,161	+				-0.4
1,679,161	+				-0.1
1,679,161	+				-0.4
1,679,161	+				+0.4
1,679,161	+				-0.5
1,679,161	+				+0.1
1,679,161	+				-0.2
1,679,169	-				-0.2
1,679,169	-				-0.4
1,679,169	-				+0.5
1,679,169	-				-0.2
1,679,169	-				+0.3
1,679,169	-				-0.0
1,679,169	-				-0.5
1,679,169	-				-0.9
1,679,169	-				+0.4
1,679,193	+				+1.4
1,679,218	+				-0.5
1,679,218	+				+2.5
1,679,239	+				-2.2
1,679,247	-				+0.4
1,679,248	+				-0.8
1,679,251	-				-0.4
1,679,278	+				-1.2
1,679,293	-				+0.4
1,679,298	+		GFF1654	0.10	+0.1
1,679,298	+		GFF1654	0.10	-1.3
1,679,306	-		GFF1654	0.12	-0.9
1,679,306	-		GFF1654	0.12	+0.0
1,679,311	+		GFF1654	0.13	+1.6
1,679,324	+		GFF1654	0.15	-0.5
1,679,332	+		GFF1654	0.16	+0.3
1,679,332	-		GFF1654	0.16	-0.2
1,679,356	+		GFF1654	0.21	+0.3
1,679,356	+		GFF1654	0.21	+0.5
1,679,357	-		GFF1654	0.21	+0.4
1,679,379	+		GFF1654	0.25	-0.3
1,679,399	+		GFF1654	0.28	-0.1
1,679,407	-		GFF1654	0.30	-0.7
1,679,407	-		GFF1654	0.30	+0.3
1,679,428	-		GFF1654	0.34	+0.2
1,679,445	+		GFF1654	0.37	+0.5
1,679,464	+		GFF1654	0.40	-1.7
1,679,467	-		GFF1654	0.41	+1.0
1,679,480	+		GFF1654	0.43	-0.7
1,679,490	+		GFF1654	0.45	+0.2
1,679,490	+		GFF1654	0.45	-0.9
1,679,498	-		GFF1654	0.46	+0.7
1,679,505	+		GFF1654	0.48	+1.3