Strain Fitness in Sphingobium sp. HT1-2 around GFF1603

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,629,200	+				+0.4
1,629,245	-				+0.2
1,629,253	+				+0.5
1,629,265	+				-0.3
1,629,273	-				+0.6
1,629,297	+				-0.6
1,629,297	-				+0.2
1,629,297	-				-2.2
1,629,297	-				+0.4
1,629,304	+				-1.1
1,629,312	-				-0.1
1,629,327	-				+0.4
1,629,406	+		GFF1602	0.19	+0.2
1,629,411	+		GFF1602	0.20	-1.1
1,629,414	-		GFF1602	0.20	+0.4
1,629,489	+		GFF1602	0.30	-2.2
1,629,489	+		GFF1602	0.30	-0.2
1,629,489	+		GFF1602	0.30	+0.1
1,629,489	+		GFF1602	0.30	-1.9
1,629,489	+		GFF1602	0.30	-1.6
1,629,489	+		GFF1602	0.30	+0.4
1,629,491	+		GFF1602	0.30	-0.3
1,629,491	+		GFF1602	0.30	-0.3
1,629,491	+		GFF1602	0.30	-1.8
1,629,491	+		GFF1602	0.30	-0.1
1,629,496	+		GFF1602	0.31	-0.3
1,629,497	-		GFF1602	0.31	+0.9
1,629,497	-		GFF1602	0.31	-0.1
1,629,497	-		GFF1602	0.31	+0.9
1,629,497	-		GFF1602	0.31	+1.4
1,629,497	-		GFF1602	0.31	-0.7
1,629,497	-		GFF1602	0.31	-1.7
1,629,497	-		GFF1602	0.31	+1.4
1,629,497	-		GFF1602	0.31	+0.5
1,629,497	-		GFF1602	0.31	-0.4
1,629,497	-		GFF1602	0.31	+0.0
1,629,497	-		GFF1602	0.31	-0.9
1,629,497	-		GFF1602	0.31	-0.5
1,629,497	-		GFF1602	0.31	+0.3
1,629,499	-		GFF1602	0.31	-0.3
1,629,499	-		GFF1602	0.31	-1.7
1,629,499	-		GFF1602	0.31	-0.4
1,629,499	-		GFF1602	0.31	-0.4
1,629,499	-		GFF1602	0.31	-0.1
1,629,499	-		GFF1602	0.31	-0.3
1,629,504	-		GFF1602	0.32	-0.1
1,629,534	-		GFF1602	0.36	+0.4
1,629,556	+		GFF1602	0.39	-0.1
1,629,566	+		GFF1602	0.40	-0.2
1,629,574	+		GFF1602	0.41	-0.2
1,629,574	+		GFF1602	0.41	+0.0
1,629,574	+		GFF1602	0.41	+0.3
1,629,574	+		GFF1602	0.41	-1.2
1,629,574	+		GFF1602	0.41	-1.1
1,629,576	+		GFF1602	0.41	-1.4
1,629,576	+		GFF1602	0.41	+0.2
1,629,576	+		GFF1602	0.41	-0.3
1,629,582	-		GFF1602	0.42	+0.1
1,629,582	-		GFF1602	0.42	+1.2
1,629,582	-		GFF1602	0.42	+0.3
1,629,582	-		GFF1602	0.42	+0.7
1,629,582	-		GFF1602	0.42	-0.2
1,629,582	-		GFF1602	0.42	-0.9
1,629,582	-		GFF1602	0.42	-1.0
1,629,582	-		GFF1602	0.42	-1.0
1,629,584	-		GFF1602	0.42	-2.5
1,629,584	-		GFF1602	0.42	-0.3
1,629,584	-		GFF1602	0.42	-0.1
1,629,586	+		GFF1602	0.42	-0.8
1,629,597	+		GFF1602	0.44	-1.0
1,629,615	+		GFF1602	0.46	-2.2
1,629,623	-		GFF1602	0.47	+0.1
1,629,625	+		GFF1602	0.47	-0.8
1,629,629	+		GFF1602	0.48	-0.3
1,629,629	+		GFF1602	0.48	-1.0
1,629,647	-		GFF1602	0.50	-1.6
1,629,658	+		GFF1602	0.52	+0.5
1,629,665	+		GFF1602	0.53	-2.3
1,629,698	-		GFF1602	0.57	+0.6
1,629,701	-		GFF1602	0.57	-0.7
1,629,722	+		GFF1602	0.60	+0.4
1,629,758	-		GFF1602	0.65	-1.3
1,629,782	+		GFF1602	0.68	+0.7
1,629,789	+		GFF1602	0.69	-1.3
1,629,797	-		GFF1602	0.70	-2.0
1,629,800	+		GFF1602	0.70	-1.4
1,629,800	+		GFF1602	0.70	-0.8
1,629,808	-		GFF1602	0.71	+0.2
1,629,808	-		GFF1602	0.71	-1.1
1,629,833	+		GFF1602	0.74	-1.1
1,629,841	-		GFF1602	0.75	+0.2
1,629,847	-		GFF1602	0.76	-2.5
1,629,872	+		GFF1602	0.79	-0.1
1,629,929	+		GFF1602	0.87	+0.7
1,629,929	+		GFF1602	0.87	-0.4
1,629,937	-		GFF1602	0.88	+0.7
1,629,937	-		GFF1602	0.88	-0.3
1,630,044	+				-1.8
1,630,052	-				-0.1
1,630,052	-				-0.0
1,630,052	-				+0.7
1,630,052	-				-0.1
1,630,062	+				+0.6
1,630,064	-				+0.4
1,630,066	+				+0.1
1,630,070	-				-0.7
1,630,076	+				-1.1
1,630,076	+				-0.8
1,630,076	+				+0.1
1,630,076	+				+0.3
1,630,076	+				+0.3
1,630,084	-				+0.3
1,630,084	-				+0.8
1,630,084	-				-1.6
1,630,084	-				-1.5
1,630,094	-				+1.0
1,630,142	-				-1.3
1,630,151	-				+1.5
1,630,166	-				-1.6
1,630,173	+				+0.7
1,630,176	-		GFF1603	0.11	-0.7
1,630,181	-		GFF1603	0.13	-2.0
1,630,181	-		GFF1603	0.13	-1.8
1,630,205	+		GFF1603	0.23	-2.1
1,630,206	+		GFF1603	0.23	+1.0
1,630,209	-		GFF1603	0.24	+0.7
1,630,211	+		GFF1603	0.25	-0.6
1,630,213	-		GFF1603	0.26	+0.3
1,630,232	-		GFF1603	0.34	+0.2
1,630,285	+		GFF1603	0.56	-3.2
1,630,295	-		GFF1603	0.60	-0.1
1,630,303	-		GFF1603	0.63	+2.2
1,630,305	+		GFF1603	0.64	-1.6
1,630,305	+		GFF1603	0.64	+0.9
1,630,305	+		GFF1603	0.64	+0.3
1,630,305	+		GFF1603	0.64	+0.1
1,630,305	+		GFF1603	0.64	+0.8
1,630,305	+		GFF1603	0.64	+1.6
1,630,305	+		GFF1603	0.64	-0.3
1,630,305	+		GFF1603	0.64	-0.5
1,630,305	+		GFF1603	0.64	-1.2
1,630,313	-		GFF1603	0.67	+0.3
1,630,313	-		GFF1603	0.67	-1.8
1,630,329	+		GFF1603	0.74	-2.0
1,630,337	-		GFF1603	0.77	-0.2
1,630,337	-		GFF1603	0.77	-1.8
1,630,339	+		GFF1603	0.78	-0.4
1,630,345	+		GFF1603	0.80	-1.3
1,630,347	-		GFF1603	0.81	-1.5
1,630,347	-		GFF1603	0.81	-0.3
1,630,357	+		GFF1603	0.85	-1.1
1,630,364	+		GFF1603	0.88	+0.6
1,630,372	-				-1.3
1,630,379	+				-0.6
1,630,379	+				+0.4
1,630,379	+				-0.5
1,630,387	-				-0.5
1,630,387	-				-1.4
1,630,387	-				-2.3
1,630,387	-				-0.4
1,630,394	+				+0.7
1,630,402	-				-0.5
1,630,404	+				+1.0
1,630,412	-				+0.2
1,630,420	+				+0.4
1,630,422	-				-0.3
1,630,443	-				+0.2
1,630,462	+				-0.1
1,630,462	+				-0.0
1,630,470	-				-0.8
1,630,491	+				-0.1
1,630,499	-				+0.3
1,630,517	+				+0.5
1,630,517	+				+0.4
1,630,520	-				+0.3
1,630,529	+				-0.6
1,630,539	+				+0.8
1,630,547	-				-1.3
1,630,548	-				+0.1
1,630,551	-				-2.0
1,630,577	+		GFF1604	0.13	-0.7
1,630,594	+		GFF1604	0.17	-0.6
1,630,615	-		GFF1604	0.21	-0.6
1,630,657	+		GFF1604	0.29	+0.5
1,630,657	+		GFF1604	0.29	+0.4
1,630,657	+		GFF1604	0.29	+0.6
1,630,657	+		GFF1604	0.29	+0.9
1,630,662	+		GFF1604	0.30	-1.0
1,630,665	-		GFF1604	0.30	+0.2
1,630,675	-		GFF1604	0.32	-0.2
1,630,704	+		GFF1604	0.38	-1.0
1,630,718	+		GFF1604	0.40	+0.2
1,630,719	-		GFF1604	0.41	+0.5
1,630,723	+		GFF1604	0.41	-2.3
1,630,723	+		GFF1604	0.41	-0.7
1,630,723	+		GFF1604	0.41	+1.3
1,630,723	+		GFF1604	0.41	-0.8
1,630,723	+		GFF1604	0.41	-1.6
1,630,729	-		GFF1604	0.43	-0.7
1,630,757	+		GFF1604	0.48	+0.4
1,630,757	+		GFF1604	0.48	-0.9
1,630,757	+		GFF1604	0.48	+0.2
1,630,757	+		GFF1604	0.48	-0.6
1,630,765	-		GFF1604	0.49	-1.6
1,630,767	+		GFF1604	0.50	+0.6
1,630,767	+		GFF1604	0.50	-0.8
1,630,767	+		GFF1604	0.50	-0.3
1,630,767	+		GFF1604	0.50	-0.2
1,630,767	+		GFF1604	0.50	+0.9
1,630,767	+		GFF1604	0.50	-0.1
1,630,767	+		GFF1604	0.50	-0.3
1,630,767	+		GFF1604	0.50	-0.9
1,630,767	+		GFF1604	0.50	+0.2
1,630,772	+		GFF1604	0.51	-0.6
1,630,775	-		GFF1604	0.51	+0.1
1,630,775	-		GFF1604	0.51	-0.5
1,630,775	-		GFF1604	0.51	-1.0
1,630,775	-		GFF1604	0.51	-1.4
1,630,775	-		GFF1604	0.51	+0.1
1,630,775	-		GFF1604	0.51	-1.5
1,630,775	-		GFF1604	0.51	+0.3
1,630,775	-		GFF1604	0.51	+0.4
1,630,775	-		GFF1604	0.51	-0.0
1,630,785	+		GFF1604	0.53	-0.1
1,630,793	-		GFF1604	0.55	+0.2
1,630,793	-		GFF1604	0.55	-0.7
1,630,807	-		GFF1604	0.57	+1.0
1,630,807	-		GFF1604	0.57	+0.9
1,630,809	+		GFF1604	0.58	-0.2
1,630,817	-		GFF1604	0.59	-0.0
1,630,830	+		GFF1604	0.62	-0.8
1,630,830	+		GFF1604	0.62	+0.6
1,630,838	-		GFF1604	0.63	-2.0
1,630,838	-		GFF1604	0.63	+0.5
1,630,838	-		GFF1604	0.63	+0.9
1,630,838	-		GFF1604	0.63	-0.9
1,630,838	-		GFF1604	0.63	+0.2
1,630,903	+		GFF1604	0.76	-0.6
1,630,904	+		GFF1604	0.76	-0.0
1,630,904	+		GFF1604	0.76	-0.6
1,630,922	+		GFF1604	0.80	-0.7
1,630,922	+		GFF1604	0.80	+0.2
1,630,927	+		GFF1604	0.80	-1.1
1,630,927	+		GFF1604	0.80	+0.6
1,630,927	+		GFF1604	0.80	-1.1
1,630,927	+		GFF1604	0.80	+0.8
1,630,927	+		GFF1604	0.80	-0.9
1,630,930	-		GFF1604	0.81	-1.3
1,630,930	-		GFF1604	0.81	+0.2
1,630,930	-		GFF1604	0.81	-0.5
1,630,930	-		GFF1604	0.81	-0.2
1,630,930	-		GFF1604	0.81	+0.2
1,630,930	-		GFF1604	0.81	-1.3
1,630,930	-		GFF1604	0.81	-0.1
1,630,935	-		GFF1604	0.82	-2.2
1,630,935	-		GFF1604	0.82	-0.3
1,630,935	-		GFF1604	0.82	-0.3
1,630,952	+		GFF1604	0.85	+0.4
1,630,952	+		GFF1604	0.85	-0.2
1,630,974	+		GFF1604	0.89	+1.3
1,631,006	-				-1.1
1,631,022	+				+0.3
1,631,023	+				-0.1
1,631,023	+				+1.3
1,631,054	+				-0.4
1,631,069	+				-1.3
1,631,109	+		GFF1605	0.11	+1.5