Strain Fitness in Sphingobium sp. HT1-2 around GFF1571

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,597,173	-		GFF1569	0.71	+0.4
1,597,178	+		GFF1569	0.72	-0.9
1,597,186	+		GFF1569	0.73	+0.2
1,597,191	-		GFF1569	0.74	-0.4
1,597,242	+		GFF1569	0.82	+1.1
1,597,249	-		GFF1569	0.83	-1.2
1,597,249	-		GFF1569	0.83	+0.6
1,597,255	+		GFF1569	0.84	-0.6
1,597,255	+		GFF1569	0.84	-1.3
1,597,255	+		GFF1569	0.84	+0.4
1,597,255	+		GFF1569	0.84	-0.6
1,597,255	+		GFF1569	0.84	+0.8
1,597,255	+		GFF1569	0.84	-1.4
1,597,255	+		GFF1569	0.84	-0.8
1,597,263	-		GFF1569	0.85	+0.0
1,597,263	-		GFF1569	0.85	-0.7
1,597,270	-		GFF1569	0.87	-0.3
1,597,282	-		GFF1569	0.88	-0.3
1,597,284	+		GFF1569	0.89	-0.4
1,597,284	+		GFF1569	0.89	+1.3
1,597,284	+		GFF1569	0.89	-1.1
1,597,290	+		GFF1569	0.90	+0.1
1,597,290	+		GFF1569	0.90	+0.1
1,597,301	+				-0.5
1,597,324	+				-0.5
1,597,332	-				+0.3
1,597,341	-				+1.1
1,597,343	+				+0.0
1,597,345	+				-1.0
1,597,351	-				-0.2
1,597,351	-				+0.1
1,597,355	+				+0.4
1,597,369	+				+0.6
1,597,391	+				-0.8
1,597,402	+				-0.4
1,597,405	-				-0.9
1,597,410	-				-1.0
1,597,418	-				-0.5
1,597,430	+				+0.6
1,597,460	-				-2.4
1,597,462	+				+1.6
1,597,462	+				-1.1
1,597,462	+				-0.6
1,597,462	+				-0.6
1,597,462	+				-0.7
1,597,470	-				-0.3
1,597,470	-				-1.3
1,597,470	-				+0.9
1,597,470	-				-0.2
1,597,483	+		GFF1570	0.12	-1.6
1,597,483	+		GFF1570	0.12	-1.4
1,597,483	+		GFF1570	0.12	+0.3
1,597,483	+		GFF1570	0.12	+0.9
1,597,483	+		GFF1570	0.12	-1.5
1,597,483	+		GFF1570	0.12	-0.1
1,597,491	-		GFF1570	0.13	+0.0
1,597,491	-		GFF1570	0.13	+0.9
1,597,499	+		GFF1570	0.14	+0.9
1,597,504	+		GFF1570	0.15	-1.3
1,597,506	-		GFF1570	0.15	+1.1
1,597,507	+		GFF1570	0.16	+0.2
1,597,507	+		GFF1570	0.16	-0.5
1,597,507	+		GFF1570	0.16	-0.1
1,597,507	-		GFF1570	0.16	-1.6
1,597,507	-		GFF1570	0.16	+0.7
1,597,515	-		GFF1570	0.17	-0.8
1,597,515	-		GFF1570	0.17	+0.3
1,597,520	-		GFF1570	0.18	-1.8
1,597,528	+		GFF1570	0.19	-1.6
1,597,538	+		GFF1570	0.20	+0.2
1,597,554	-		GFF1570	0.23	-1.8
1,597,611	-		GFF1570	0.32	+0.6
1,597,616	-		GFF1570	0.33	-0.4
1,597,728	-		GFF1570	0.51	+0.1
1,597,755	+		GFF1570	0.55	-0.1
1,597,755	+		GFF1570	0.55	+0.9
1,597,760	+		GFF1570	0.56	+1.1
1,597,763	-		GFF1570	0.56	+0.2
1,597,768	-		GFF1570	0.57	+0.5
1,597,768	-		GFF1570	0.57	-0.3
1,597,770	+		GFF1570	0.57	-1.0
1,597,770	+		GFF1570	0.57	-2.1
1,597,771	+		GFF1570	0.57	-1.7
1,597,771	+		GFF1570	0.57	+0.8
1,597,778	-		GFF1570	0.59	-0.3
1,597,778	-		GFF1570	0.59	+0.3
1,597,779	-		GFF1570	0.59	-1.3
1,597,814	+		GFF1570	0.64	+0.5
1,597,814	+		GFF1570	0.64	-1.1
1,597,814	+		GFF1570	0.64	+0.4
1,597,830	-		GFF1570	0.67	-0.6
1,597,840	+		GFF1570	0.68	-1.0
1,597,840	+		GFF1570	0.68	+1.2
1,597,848	-		GFF1570	0.70	-0.3
1,597,851	+		GFF1570	0.70	-0.8
1,597,875	+		GFF1570	0.74	-1.8
1,597,878	+		GFF1570	0.74	+0.6
1,597,883	-		GFF1570	0.75	-1.8
1,597,912	+		GFF1570	0.80	+0.5
1,597,915	-		GFF1570	0.80	+0.2
1,597,920	-		GFF1570	0.81	+1.5
1,597,920	-		GFF1570	0.81	+0.7
1,597,935	-		GFF1570	0.83	+0.5
1,597,935	-		GFF1570	0.83	-0.8
1,597,944	-		GFF1570	0.85	+0.1
1,597,994	+				-1.5
1,598,035	+				+0.2
1,598,038	-				+1.1
1,598,048	-				-1.0
1,598,072	-				+0.1
1,598,097	+				-0.2
1,598,106	+				-0.6
1,598,106	+				-1.6
1,598,131	-				+0.9
1,598,143	+				-0.5
1,598,143	+				+0.2
1,598,184	+				+0.6
1,598,235	+				-0.8
1,598,243	-				-0.7
1,598,243	-				+1.4
1,598,246	+				-0.6
1,598,246	+				-0.4
1,598,254	-				-0.7
1,598,267	+				-0.5
1,598,275	-				+0.6
1,598,290	-		GFF1571	0.11	-1.1
1,598,317	+		GFF1571	0.13	-0.6
1,598,318	+		GFF1571	0.13	-1.8
1,598,351	-		GFF1571	0.16	-1.7
1,598,351	-		GFF1571	0.16	-1.5
1,598,354	+		GFF1571	0.16	+0.0
1,598,379	-		GFF1571	0.18	-1.0
1,598,417	+		GFF1571	0.21	-0.7
1,598,417	+		GFF1571	0.21	+0.6
1,598,417	+		GFF1571	0.21	-0.2
1,598,417	+		GFF1571	0.21	-0.4
1,598,417	+		GFF1571	0.21	-0.4
1,598,425	-		GFF1571	0.21	-0.6
1,598,425	-		GFF1571	0.21	-1.1
1,598,425	-		GFF1571	0.21	-0.1
1,598,444	-		GFF1571	0.23	+0.5
1,598,539	+		GFF1571	0.31	-1.9
1,598,558	-		GFF1571	0.32	+0.5
1,598,570	+		GFF1571	0.33	+0.2
1,598,637	+		GFF1571	0.39	+1.2
1,598,641	+		GFF1571	0.39	-1.8
1,598,641	+		GFF1571	0.39	-1.4
1,598,641	+		GFF1571	0.39	-1.7
1,598,641	+		GFF1571	0.39	+0.7
1,598,649	-		GFF1571	0.40	+0.1
1,598,649	-		GFF1571	0.40	+1.3
1,598,649	-		GFF1571	0.40	+0.0
1,598,667	-		GFF1571	0.41	-0.2
1,598,676	+		GFF1571	0.42	-0.1
1,598,676	+		GFF1571	0.42	+0.2
1,598,676	+		GFF1571	0.42	-0.1
1,598,684	+		GFF1571	0.42	+0.3
1,598,684	-		GFF1571	0.42	-0.3
1,598,707	+		GFF1571	0.44	+1.2
1,598,715	-		GFF1571	0.45	-1.2
1,598,718	+		GFF1571	0.45	+0.8
1,598,718	+		GFF1571	0.45	-0.6
1,598,718	+		GFF1571	0.45	+0.3
1,598,718	+		GFF1571	0.45	+0.1
1,598,718	+		GFF1571	0.45	+0.0
1,598,718	+		GFF1571	0.45	-1.1
1,598,718	+		GFF1571	0.45	-0.8
1,598,718	+		GFF1571	0.45	-0.3
1,598,718	+		GFF1571	0.45	-0.5
1,598,718	+		GFF1571	0.45	+1.7
1,598,721	-		GFF1571	0.45	+0.4
1,598,721	-		GFF1571	0.45	-0.4
1,598,723	+		GFF1571	0.45	-1.8
1,598,726	-		GFF1571	0.46	+1.6
1,598,726	-		GFF1571	0.46	+0.4
1,598,726	-		GFF1571	0.46	-0.0
1,598,726	-		GFF1571	0.46	-1.6
1,598,726	-		GFF1571	0.46	-0.4
1,598,726	-		GFF1571	0.46	+0.8
1,598,726	-		GFF1571	0.46	+1.1
1,598,726	-		GFF1571	0.46	-0.7
1,598,726	-		GFF1571	0.46	+0.7
1,598,726	-		GFF1571	0.46	+0.1
1,598,731	-		GFF1571	0.46	-0.3
1,598,736	-		GFF1571	0.47	-0.3
1,598,790	+		GFF1571	0.51	-1.0
1,598,798	-		GFF1571	0.52	-1.3
1,598,809	-		GFF1571	0.52	-3.0
1,598,836	-		GFF1571	0.55	+0.2
1,598,891	-		GFF1571	0.59	+0.5
1,598,891	-		GFF1571	0.59	+0.1
1,598,900	+		GFF1571	0.60	+0.9
1,598,900	+		GFF1571	0.60	-0.6
1,598,900	+		GFF1571	0.60	+0.9
1,598,900	+		GFF1571	0.60	+1.1
1,598,900	+		GFF1571	0.60	+0.5
1,598,900	+		GFF1571	0.60	-0.7
1,598,908	-		GFF1571	0.60	+0.0
1,598,908	-		GFF1571	0.60	-0.5
1,598,908	-		GFF1571	0.60	+0.1
1,598,908	-		GFF1571	0.60	-1.8
1,598,908	-		GFF1571	0.60	+0.2
1,598,908	-		GFF1571	0.60	-0.9
1,598,908	-		GFF1571	0.60	-0.2
1,598,908	-		GFF1571	0.60	-0.1
1,598,916	+		GFF1571	0.61	-2.8
1,598,924	-		GFF1571	0.62	-0.4
1,598,949	+		GFF1571	0.64	-0.8
1,599,026	+		GFF1571	0.70	-0.3
1,599,034	-		GFF1571	0.71	+0.6
1,599,059	+		GFF1571	0.73	+0.8
1,599,061	+		GFF1571	0.73	-0.6
1,599,067	-		GFF1571	0.73	-0.1
1,599,069	-		GFF1571	0.73	+0.0
1,599,077	-		GFF1571	0.74	+0.7
1,599,112	+		GFF1571	0.77	-0.7
1,599,112	+		GFF1571	0.77	-1.8
1,599,112	+		GFF1571	0.77	-0.4
1,599,112	+		GFF1571	0.77	+0.4
1,599,117	+		GFF1571	0.77	-1.1
1,599,117	+		GFF1571	0.77	+0.2
1,599,117	+		GFF1571	0.77	+1.3
1,599,117	+		GFF1571	0.77	-1.8
1,599,117	+		GFF1571	0.77	-0.6
1,599,117	+		GFF1571	0.77	+0.7
1,599,120	-		GFF1571	0.77	+0.5
1,599,120	-		GFF1571	0.77	-0.7
1,599,122	+		GFF1571	0.78	-1.1
1,599,122	+		GFF1571	0.78	-1.1
1,599,122	+		GFF1571	0.78	+0.1
1,599,122	+		GFF1571	0.78	+1.3
1,599,122	+		GFF1571	0.78	-1.2
1,599,122	+		GFF1571	0.78	-1.8
1,599,125	-		GFF1571	0.78	-1.1
1,599,130	-		GFF1571	0.78	-0.3
1,599,130	-		GFF1571	0.78	-2.1
1,599,130	-		GFF1571	0.78	-0.9
1,599,130	-		GFF1571	0.78	-2.4
1,599,130	-		GFF1571	0.78	-0.1
1,599,140	+		GFF1571	0.79	-0.5
1,599,154	+		GFF1571	0.80	+0.0
1,599,159	+		GFF1571	0.81	+0.3
1,599,183	+		GFF1571	0.83	-1.5
1,599,183	+		GFF1571	0.83	-1.8
1,599,183	+		GFF1571	0.83	+0.7
1,599,191	-		GFF1571	0.83	-0.8
1,599,191	-		GFF1571	0.83	-1.4
1,599,200	+		GFF1571	0.84	-0.1
1,599,234	+		GFF1571	0.87	+0.4
1,599,234	+		GFF1571	0.87	-1.9
1,599,234	+		GFF1571	0.87	-0.9
1,599,242	-		GFF1571	0.87	+0.3
1,599,242	-		GFF1571	0.87	-1.0
1,599,242	-		GFF1571	0.87	+0.6
1,599,242	-		GFF1571	0.87	-0.6
1,599,242	-		GFF1571	0.87	-1.4
1,599,269	+		GFF1571	0.89	-0.8
1,599,277	-				-0.3
1,599,300	-				-0.1
1,599,301	-				+0.4
1,599,303	+				+0.1
1,599,328	+				-0.8
1,599,350	+				+0.5
1,599,350	+				-1.1
1,599,358	-				-0.1
1,599,369	+				-1.6
1,599,422	+				-0.7
1,599,422	+				-0.5
1,599,422	+				+0.3
1,599,430	-				-1.3
1,599,430	-				+0.6
1,599,433	+				-2.8
1,599,441	-				+0.3
1,599,468	+				+0.7
1,599,481	+				-2.2
1,599,481	+				+0.9
1,599,481	+				+1.2
1,599,481	+				-1.4
1,599,481	+				-0.3
1,599,481	+				-2.4
1,599,481	+				-0.4
1,599,481	+				+0.1
1,599,481	+				-1.4
1,599,481	+				+0.0
1,599,481	+				-1.0
1,599,481	+				+0.8
1,599,481	+				-2.6
1,599,481	+				+0.8
1,599,481	+				-0.4
1,599,481	+				+0.9
1,599,481	+				+1.2
1,599,489	+				+1.1
1,599,489	-				-1.3
1,599,489	-				-0.1
1,599,489	-				+0.0
1,599,489	-				+0.0
1,599,489	-				-0.2
1,599,489	-				+0.3
1,599,489	-				+0.8
1,599,489	-				+0.2
1,599,489	-				+0.7
1,599,489	-				-1.2
1,599,489	-				-0.5
1,599,489	-				-0.3
1,599,489	-				+0.8
1,599,489	-				-0.7
1,599,491	+				-1.6
1,599,491	+				-0.2
1,599,498	-				+0.5
1,599,499	-				-1.3
1,599,499	-				+0.9
1,599,499	-				+0.4
1,599,501	+				+1.1
1,599,517	+				+0.2
1,599,525	-				-2.8
1,599,529	+				-0.9
1,599,530	+				+0.1
1,599,538	+				+0.1
1,599,538	+				-1.7
1,599,540	-				+0.4
1,599,555	+				-1.1
1,599,555	+				-0.3
1,599,563	-				-0.1
1,599,563	-				-1.1
1,599,572	+				-2.5
1,599,575	+				-0.9
1,599,575	+				-1.9
1,599,575	+				+0.1
1,599,580	-				-1.3
1,599,580	-				+1.1
1,599,580	-				+1.7
1,599,583	-				-1.4
1,599,593	-				+0.1
1,599,595	+				-1.1
1,599,595	+				+0.4
1,599,595	+				-0.4
1,599,595	+				+0.9
1,599,595	+				-0.0
1,599,600	+				+0.1
1,599,603	-				-1.5
1,599,603	-				+0.8
1,599,603	-				-1.0
1,599,603	-				-2.5
1,599,603	-				-0.3
1,599,603	-				-0.2
1,599,603	-				-0.1
1,599,608	+				-0.8
1,599,608	+				-0.3
1,599,609	+				+0.8
1,599,609	+				-2.1
1,599,627	+				+0.3
1,599,627	+				-1.1
1,599,627	+				+0.0
1,599,627	+				-0.1
1,599,632	+				-2.0
1,599,632	+				+0.2
1,599,632	+				-0.6
1,599,635	-				-0.3
1,599,635	-				-0.1
1,599,640	-		GFF1572	0.10	-0.4
1,599,640	-		GFF1572	0.10	+0.4
1,599,642	+		GFF1572	0.10	+0.6
1,599,669	-		GFF1572	0.11	-0.7
1,599,682	-		GFF1572	0.12	-0.4
1,599,685	-		GFF1572	0.12	+1.3
1,599,707	-		GFF1572	0.13	-0.7
1,599,732	+		GFF1572	0.14	-0.2
1,599,732	+		GFF1572	0.14	-0.7
1,599,742	+		GFF1572	0.14	+0.5
1,599,755	+		GFF1572	0.15	-0.6
1,599,755	+		GFF1572	0.15	-0.6
1,599,784	+		GFF1572	0.16	-0.1
1,599,801	+		GFF1572	0.17	+0.0
1,599,801	+		GFF1572	0.17	-0.1
1,599,809	-		GFF1572	0.17	+0.2
1,599,820	-		GFF1572	0.18	-1.3
1,599,822	+		GFF1572	0.18	-0.3
1,599,822	+		GFF1572	0.18	+0.2
1,599,828	+		GFF1572	0.18	+1.2
1,599,830	-		GFF1572	0.18	-0.9
1,599,830	-		GFF1572	0.18	-0.7
1,599,830	-		GFF1572	0.18	+0.7
1,599,842	-		GFF1572	0.19	+0.9
1,599,851	+		GFF1572	0.19	+0.1
1,599,859	-		GFF1572	0.19	-0.5
1,599,867	+		GFF1572	0.20	-1.4
1,599,870	-		GFF1572	0.20	-0.2
1,599,872	-		GFF1572	0.20	-0.8
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