Strain Fitness in Sphingobium sp. HT1-2 around GFF1554

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,585,241	-		GFF1552	0.44	+0.4
1,585,243	+		GFF1552	0.45	+0.4
1,585,243	+		GFF1552	0.45	-0.1
1,585,248	-		GFF1552	0.45	+0.7
1,585,248	-		GFF1552	0.45	-1.5
1,585,251	-		GFF1552	0.45	+0.6
1,585,255	-		GFF1552	0.46	-1.9
1,585,255	-		GFF1552	0.46	-0.5
1,585,256	-		GFF1552	0.46	+0.7
1,585,267	-		GFF1552	0.47	-1.4
1,585,277	+		GFF1552	0.47	-0.5
1,585,295	+		GFF1552	0.49	+0.9
1,585,303	-		GFF1552	0.50	+0.4
1,585,303	-		GFF1552	0.50	+0.2
1,585,321	+		GFF1552	0.51	+0.6
1,585,321	+		GFF1552	0.51	-0.4
1,585,324	-		GFF1552	0.51	+0.9
1,585,329	-		GFF1552	0.52	-0.9
1,585,359	+		GFF1552	0.54	-0.7
1,585,364	+		GFF1552	0.55	+1.2
1,585,364	+		GFF1552	0.55	-0.7
1,585,364	+		GFF1552	0.55	+0.8
1,585,372	-		GFF1552	0.55	-0.3
1,585,372	-		GFF1552	0.55	+0.7
1,585,386	+		GFF1552	0.56	-0.0
1,585,386	+		GFF1552	0.56	-0.5
1,585,386	+		GFF1552	0.56	-2.1
1,585,386	+		GFF1552	0.56	+0.0
1,585,386	+		GFF1552	0.56	+0.1
1,585,386	+		GFF1552	0.56	-0.9
1,585,386	+		GFF1552	0.56	-0.7
1,585,386	+		GFF1552	0.56	-0.3
1,585,386	+		GFF1552	0.56	-0.3
1,585,386	+		GFF1552	0.56	+0.7
1,585,386	+		GFF1552	0.56	-2.2
1,585,386	+		GFF1552	0.56	+0.1
1,585,386	+		GFF1552	0.56	-1.8
1,585,386	+		GFF1552	0.56	-0.1
1,585,386	+		GFF1552	0.56	-1.9
1,585,386	+		GFF1552	0.56	+0.2
1,585,386	+		GFF1552	0.56	+0.2
1,585,386	+		GFF1552	0.56	+1.6
1,585,386	+		GFF1552	0.56	-0.6
1,585,386	+		GFF1552	0.56	-0.5
1,585,386	+		GFF1552	0.56	-0.0
1,585,387	+		GFF1552	0.57	+0.6
1,585,394	-		GFF1552	0.57	-0.2
1,585,394	-		GFF1552	0.57	+0.0
1,585,394	-		GFF1552	0.57	-0.3
1,585,394	-		GFF1552	0.57	+0.1
1,585,394	-		GFF1552	0.57	-0.7
1,585,394	-		GFF1552	0.57	+1.7
1,585,394	-		GFF1552	0.57	-1.9
1,585,394	-		GFF1552	0.57	+0.3
1,585,394	-		GFF1552	0.57	+1.0
1,585,394	-		GFF1552	0.57	-0.1
1,585,394	-		GFF1552	0.57	-0.4
1,585,394	-		GFF1552	0.57	-1.8
1,585,394	-		GFF1552	0.57	+0.4
1,585,394	-		GFF1552	0.57	+0.1
1,585,404	+		GFF1552	0.58	-2.1
1,585,404	+		GFF1552	0.58	+0.4
1,585,404	+		GFF1552	0.58	-0.9
1,585,404	+		GFF1552	0.58	+0.2
1,585,404	+		GFF1552	0.58	+0.2
1,585,404	+		GFF1552	0.58	+0.4
1,585,409	+		GFF1552	0.58	-0.6
1,585,409	+		GFF1552	0.58	+1.2
1,585,412	-		GFF1552	0.59	+0.4
1,585,412	-		GFF1552	0.59	-0.0
1,585,412	-		GFF1552	0.59	+0.1
1,585,412	-		GFF1552	0.59	-0.5
1,585,412	-		GFF1552	0.59	-1.6
1,585,412	-		GFF1552	0.59	+0.8
1,585,412	-		GFF1552	0.59	+1.3
1,585,412	-		GFF1552	0.59	-0.7
1,585,412	-		GFF1552	0.59	+0.5
1,585,414	+		GFF1552	0.59	+0.0
1,585,414	+		GFF1552	0.59	+0.3
1,585,414	+		GFF1552	0.59	-1.7
1,585,414	+		GFF1552	0.59	-0.7
1,585,414	+		GFF1552	0.59	+0.4
1,585,414	+		GFF1552	0.59	-1.9
1,585,414	+		GFF1552	0.59	+0.0
1,585,422	-		GFF1552	0.59	+0.9
1,585,422	-		GFF1552	0.59	-0.6
1,585,422	-		GFF1552	0.59	-2.0
1,585,422	-		GFF1552	0.59	-0.1
1,585,453	-		GFF1552	0.62	+1.4
1,585,453	-		GFF1552	0.62	-0.4
1,585,488	+		GFF1552	0.65	+0.3
1,585,498	+		GFF1552	0.66	-0.4
1,585,506	-		GFF1552	0.66	-0.6
1,585,511	-		GFF1552	0.67	+1.4
1,585,512	+		GFF1552	0.67	+1.0
1,585,516	-		GFF1552	0.67	+1.1
1,585,519	+		GFF1552	0.67	+0.2
1,585,519	+		GFF1552	0.67	+0.2
1,585,519	+		GFF1552	0.67	-0.1
1,585,522	-		GFF1552	0.68	-1.1
1,585,522	-		GFF1552	0.68	+0.1
1,585,525	+		GFF1552	0.68	-1.4
1,585,527	-		GFF1552	0.68	-0.5
1,585,527	-		GFF1552	0.68	+0.2
1,585,527	-		GFF1552	0.68	+0.1
1,585,554	+		GFF1552	0.70	+0.0
1,585,558	+		GFF1552	0.71	-1.6
1,585,562	-		GFF1552	0.71	-0.4
1,585,600	-		GFF1552	0.74	+0.2
1,585,601	+		GFF1552	0.74	+0.1
1,585,606	+		GFF1552	0.75	-0.8
1,585,614	-		GFF1552	0.75	+1.3
1,585,668	+		GFF1552	0.80	+0.5
1,585,671	+		GFF1552	0.80	+1.1
1,585,676	-		GFF1552	0.81	-0.5
1,585,679	+		GFF1552	0.81	-1.5
1,585,698	+		GFF1552	0.82	-1.9
1,585,698	+		GFF1552	0.82	+0.2
1,585,703	+		GFF1552	0.83	+1.0
1,585,703	+		GFF1552	0.83	-0.8
1,585,703	+		GFF1552	0.83	+0.1
1,585,703	+		GFF1552	0.83	+0.7
1,585,703	+		GFF1552	0.83	-1.1
1,585,703	+		GFF1552	0.83	+0.3
1,585,703	+		GFF1552	0.83	-1.6
1,585,706	-		GFF1552	0.83	-0.9
1,585,706	-		GFF1552	0.83	+0.7
1,585,706	-		GFF1552	0.83	-0.3
1,585,706	-		GFF1552	0.83	+0.8
1,585,711	-		GFF1552	0.83	+0.6
1,585,711	-		GFF1552	0.83	-1.1
1,585,711	-		GFF1552	0.83	-2.1
1,585,711	-		GFF1552	0.83	-1.1
1,585,711	-		GFF1552	0.83	-1.3
1,585,745	-		GFF1552	0.86	-0.7
1,585,750	-		GFF1552	0.87	+0.5
1,585,750	-		GFF1552	0.87	+1.0
1,585,769	+		GFF1552	0.88	-1.9
1,585,786	+		GFF1552	0.90	-0.6
1,585,793	-				-1.8
1,585,807	-				-1.2
1,585,844	+				+0.6
1,585,850	-				+1.3
1,585,875	+				+0.2
1,585,876	+				+0.2
1,585,876	+				-2.2
1,585,876	+				+0.1
1,585,876	+				+1.0
1,585,876	+				-0.2
1,585,876	+				-0.2
1,585,876	+				-0.4
1,585,884	-				-0.3
1,585,884	-				+1.2
1,585,884	-				+1.6
1,585,884	-				+0.8
1,585,888	-				-0.1
1,585,946	+				+0.9
1,585,946	+				+0.2
1,585,946	+				+0.4
1,585,954	-				+0.9
1,585,954	-				-1.8
1,585,954	-				+0.1
1,585,963	+				-0.4
1,585,963	+				-1.7
1,585,968	+				-1.4
1,585,976	-				+0.1
1,585,976	-				-0.5
1,585,977	+				-0.3
1,585,991	-				-0.1
1,586,002	-				+0.2
1,586,027	-				-0.6
1,586,044	+		GFF1553	0.12	-0.1
1,586,044	+		GFF1553	0.12	-0.3
1,586,044	+		GFF1553	0.12	+0.0
1,586,044	+		GFF1553	0.12	-1.6
1,586,044	+		GFF1553	0.12	-0.7
1,586,050	-		GFF1553	0.15	+0.5
1,586,052	-		GFF1553	0.16	-0.2
1,586,052	-		GFF1553	0.16	+2.0
1,586,052	-		GFF1553	0.16	-0.5
1,586,052	-		GFF1553	0.16	+1.6
1,586,052	-		GFF1553	0.16	+0.1
1,586,059	+		GFF1553	0.20	+0.0
1,586,060	-		GFF1553	0.20	+0.7
1,586,062	+		GFF1553	0.21	+0.3
1,586,062	+		GFF1553	0.21	+1.0
1,586,067	+		GFF1553	0.24	-0.2
1,586,067	+		GFF1553	0.24	-0.9
1,586,073	+		GFF1553	0.27	-1.8
1,586,073	+		GFF1553	0.27	+0.1
1,586,073	+		GFF1553	0.27	-0.5
1,586,073	+		GFF1553	0.27	+0.1
1,586,075	-		GFF1553	0.28	-1.5
1,586,075	-		GFF1553	0.28	-0.5
1,586,081	-		GFF1553	0.31	-0.4
1,586,081	-		GFF1553	0.31	-1.1
1,586,081	-		GFF1553	0.31	+0.8
1,586,081	-		GFF1553	0.31	-0.8
1,586,083	-		GFF1553	0.32	-1.0
1,586,100	-		GFF1553	0.41	+0.3
1,586,110	-		GFF1553	0.46	+0.3
1,586,125	+		GFF1553	0.54	+0.4
1,586,125	+		GFF1553	0.54	+0.0
1,586,125	+		GFF1553	0.54	+0.4
1,586,126	+		GFF1553	0.55	+1.9
1,586,131	+		GFF1553	0.57	+0.5
1,586,136	+		GFF1553	0.60	-0.7
1,586,144	-		GFF1553	0.64	-1.1
1,586,144	-		GFF1553	0.64	+1.1
1,586,144	-		GFF1553	0.64	-1.2
1,586,192	+		GFF1553	0.89	-1.3
1,586,207	-				-0.3
1,586,225	+				-0.8
1,586,233	-				-1.7
1,586,235	-				-0.8
1,586,261	+				+0.1
1,586,269	-				+0.4
1,586,310	+				+0.1
1,586,318	+		GFF1554	0.11	-0.4
1,586,373	-		GFF1554	0.18	+0.4
1,586,379	+		GFF1554	0.19	+0.1
1,586,379	+		GFF1554	0.19	-0.7
1,586,379	+		GFF1554	0.19	+0.4
1,586,379	+		GFF1554	0.19	-1.8
1,586,381	+		GFF1554	0.20	-0.9
1,586,384	+		GFF1554	0.20	-1.2
1,586,387	-		GFF1554	0.20	-0.4
1,586,387	-		GFF1554	0.20	-2.5
1,586,435	-		GFF1554	0.27	+1.2
1,586,449	-		GFF1554	0.29	-0.5
1,586,456	-		GFF1554	0.30	+0.3
1,586,456	-		GFF1554	0.30	-0.5
1,586,456	-		GFF1554	0.30	+0.1
1,586,468	-		GFF1554	0.32	+1.0
1,586,479	-		GFF1554	0.33	-1.3
1,586,484	+		GFF1554	0.34	-1.1
1,586,512	+		GFF1554	0.38	-2.1
1,586,512	+		GFF1554	0.38	+0.0
1,586,512	+		GFF1554	0.38	+0.5
1,586,512	+		GFF1554	0.38	-0.2
1,586,512	+		GFF1554	0.38	+0.1
1,586,518	+		GFF1554	0.39	-1.1
1,586,520	-		GFF1554	0.39	+0.9
1,586,520	-		GFF1554	0.39	+0.6
1,586,520	-		GFF1554	0.39	-1.3
1,586,520	-		GFF1554	0.39	-0.3
1,586,545	+		GFF1554	0.42	-2.4
1,586,558	-		GFF1554	0.44	+1.3
1,586,567	+		GFF1554	0.45	-0.7
1,586,567	+		GFF1554	0.45	+0.2
1,586,573	-		GFF1554	0.46	+0.2
1,586,575	-		GFF1554	0.47	+0.2
1,586,575	-		GFF1554	0.47	+0.0
1,586,575	-		GFF1554	0.47	-2.3
1,586,578	-		GFF1554	0.47	+0.2
1,586,585	-		GFF1554	0.48	-0.3
1,586,604	-		GFF1554	0.51	-1.0
1,586,613	+		GFF1554	0.52	+0.7
1,586,613	+		GFF1554	0.52	-1.4
1,586,613	+		GFF1554	0.52	-1.4
1,586,621	-		GFF1554	0.53	+0.3
1,586,621	-		GFF1554	0.53	-0.1
1,586,623	+		GFF1554	0.53	+0.1
1,586,623	+		GFF1554	0.53	-1.1
1,586,636	-		GFF1554	0.55	-0.3
1,586,646	-		GFF1554	0.56	+1.3
1,586,656	-		GFF1554	0.58	-1.4
1,586,663	+		GFF1554	0.59	-0.7
1,586,673	+		GFF1554	0.60	+0.4
1,586,688	+		GFF1554	0.62	-1.5
1,586,688	+		GFF1554	0.62	-1.0
1,586,688	+		GFF1554	0.62	-0.2
1,586,688	+		GFF1554	0.62	+0.0
1,586,688	+		GFF1554	0.62	+0.7
1,586,688	+		GFF1554	0.62	-1.8
1,586,688	+		GFF1554	0.62	-0.2
1,586,696	-		GFF1554	0.63	-0.5
1,586,696	-		GFF1554	0.63	+1.4
1,586,696	-		GFF1554	0.63	+0.0
1,586,696	-		GFF1554	0.63	-1.0
1,586,704	-		GFF1554	0.65	-0.8
1,586,719	+		GFF1554	0.67	+0.5
1,586,726	+		GFF1554	0.68	+0.6
1,586,732	+		GFF1554	0.68	+0.2
1,586,758	-		GFF1554	0.72	-1.2
1,586,763	+		GFF1554	0.73	-0.2
1,586,763	+		GFF1554	0.73	-0.3
1,586,763	+		GFF1554	0.73	-0.1
1,586,763	+		GFF1554	0.73	-1.4
1,586,763	+		GFF1554	0.73	-2.5
1,586,768	-		GFF1554	0.74	-1.4
1,586,770	+		GFF1554	0.74	-0.1
1,586,770	+		GFF1554	0.74	-0.4
1,586,770	+		GFF1554	0.74	-1.0
1,586,771	-		GFF1554	0.74	+0.3
1,586,771	-		GFF1554	0.74	-1.8
1,586,771	-		GFF1554	0.74	-0.1
1,586,771	-		GFF1554	0.74	-2.4
1,586,776	-		GFF1554	0.75	+0.1
1,586,778	-		GFF1554	0.75	-0.7
1,586,778	-		GFF1554	0.75	-0.3
1,586,778	-		GFF1554	0.75	-1.0
1,586,780	+		GFF1554	0.75	+1.3
1,586,784	+		GFF1554	0.76	+0.9
1,586,788	-		GFF1554	0.76	-0.6
1,586,789	+		GFF1554	0.76	-1.9
1,586,797	-		GFF1554	0.78	+0.5
1,586,835	+		GFF1554	0.83	+0.5
1,586,847	-		GFF1554	0.85	+1.2
1,586,867	+		GFF1554	0.87	-1.0
1,586,878	+		GFF1554	0.89	-0.0
1,586,880	-		GFF1554	0.89	-2.0
1,586,886	-				+1.0
1,586,886	-				+1.0
1,586,897	-				+0.7
1,586,969	-				+0.9
1,587,035	+				-0.5
1,587,046	+				-0.6
1,587,046	+				-0.2
1,587,047	+				+0.7
1,587,052	+				+0.3
1,587,053	-				+0.2
1,587,054	-				+0.5
1,587,057	+				-2.5
1,587,057	+				-0.2
1,587,057	+				+0.1
1,587,057	+				-1.4
1,587,060	-				+1.3
1,587,065	-				-0.1
1,587,074	+				+0.9
1,587,074	+				-1.8
1,587,082	-				+1.0
1,587,082	-				+0.9
1,587,082	-				+0.3
1,587,082	-				-0.7
1,587,092	-				+0.0
1,587,132	-				-1.5
1,587,132	-				+0.1
1,587,150	+				+1.1
1,587,151	+				-2.9
1,587,151	+				-1.9
1,587,151	+				-0.4
1,587,159	-				-1.3
1,587,159	-				-0.1
1,587,163	-				+0.0
1,587,166	+				+0.5
1,587,193	+		GFF1555	0.16	-3.0
1,587,199	+		GFF1555	0.18	-2.1
1,587,201	-		GFF1555	0.19	+0.1
1,587,203	+		GFF1555	0.19	-0.3
1,587,203	+		GFF1555	0.19	+0.0
1,587,203	+		GFF1555	0.19	+0.9
1,587,203	+		GFF1555	0.19	+0.6
1,587,203	+		GFF1555	0.19	-0.4
1,587,203	+		GFF1555	0.19	+0.7
1,587,203	+		GFF1555	0.19	+1.3
1,587,203	+		GFF1555	0.19	+0.8
1,587,203	+		GFF1555	0.19	-1.1
1,587,203	+		GFF1555	0.19	-1.3
1,587,203	+		GFF1555	0.19	-0.1
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1,587,602	-				-2.2
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