Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF148 and GFF149 are separated by 183 nucleotides GFF149 and GFF150 are separated by 34 nucleotides GFF150 and GFF151 are separated by 142 nucleotides GFF151 and GFF152 are separated by 172 nucleotides GFF152 and GFF153 overlap by 4 nucleotides
GFF148 - ATP-dependent protease subunit HslV (EC 3.4.25.2), at 144,350 to 144,916
GFF148
GFF149 - hypothetical protein, at 145,100 to 145,285
GFF149
GFF150 - Entericidin A/B family protein, at 145,320 to 145,448
GFF150
GFF151 - tRNA-Val-CAC, at 145,591 to 145,665
GFF151
GFF152 - Efflux ABC transporter, permease protein, at 145,838 to 147,091
GFF152
GFF153 - Efflux ABC transporter, permease protein, at 147,088 to 148,530
GFF153
Position (kb) 145
146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 144.910 kb on - strand at 144.910 kb on - strand at 144.946 kb on - strand at 145.058 kb on - strand at 145.104 kb on + strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.104 kb on - strand at 145.111 kb on + strand at 145.112 kb on - strand at 145.142 kb on + strand, within GFF149 at 145.153 kb on + strand, within GFF149 at 145.164 kb on + strand, within GFF149 at 145.187 kb on + strand, within GFF149 at 145.187 kb on + strand, within GFF149 at 145.192 kb on + strand, within GFF149 at 145.200 kb on + strand, within GFF149 at 145.231 kb on + strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.247 kb on - strand, within GFF149 at 145.298 kb on - strand at 145.306 kb on - strand at 145.382 kb on - strand, within GFF150 at 145.384 kb on + strand, within GFF150 at 145.386 kb on + strand, within GFF150 at 145.392 kb on - strand, within GFF150 at 145.465 kb on + strand at 145.470 kb on + strand at 145.470 kb on + strand at 145.470 kb on + strand at 145.473 kb on - strand at 145.473 kb on - strand at 145.475 kb on + strand at 145.478 kb on - strand at 145.480 kb on + strand at 145.480 kb on + strand at 145.485 kb on + strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.488 kb on - strand at 145.493 kb on - strand at 145.493 kb on - strand at 145.507 kb on + strand at 145.515 kb on - strand at 145.515 kb on - strand at 145.579 kb on + strand at 145.582 kb on + strand at 145.731 kb on + strand at 145.736 kb on + strand at 145.736 kb on + strand at 145.736 kb on + strand at 145.739 kb on - strand at 145.739 kb on - strand at 145.742 kb on - strand at 145.744 kb on - strand at 145.744 kb on - strand at 145.744 kb on - strand at 145.757 kb on - strand at 145.841 kb on - strand at 145.922 kb on + strand at 145.935 kb on - strand at 145.939 kb on - strand at 145.959 kb on - strand at 145.991 kb on - strand, within GFF152 at 146.016 kb on - strand, within GFF152 at 146.032 kb on - strand, within GFF152 at 146.052 kb on + strand, within GFF152 at 146.159 kb on + strand, within GFF152 at 146.159 kb on + strand, within GFF152 at 146.164 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.231 kb on + strand, within GFF152 at 146.241 kb on + strand, within GFF152 at 146.262 kb on + strand, within GFF152 at 146.262 kb on + strand, within GFF152 at 146.264 kb on - strand, within GFF152 at 146.268 kb on - strand, within GFF152 at 146.272 kb on + strand, within GFF152 at 146.284 kb on + strand, within GFF152 at 146.326 kb on - strand, within GFF152 at 146.345 kb on - strand, within GFF152 at 146.345 kb on - strand, within GFF152 at 146.345 kb on - strand, within GFF152 at 146.346 kb on - strand, within GFF152 at 146.348 kb on - strand, within GFF152 at 146.358 kb on - strand, within GFF152 at 146.388 kb on + strand, within GFF152 at 146.408 kb on - strand, within GFF152 at 146.411 kb on - strand, within GFF152 at 146.453 kb on + strand, within GFF152 at 146.461 kb on - strand, within GFF152 at 146.468 kb on + strand, within GFF152 at 146.494 kb on + strand, within GFF152 at 146.494 kb on + strand, within GFF152 at 146.494 kb on + strand, within GFF152 at 146.494 kb on + strand, within GFF152 at 146.502 kb on - strand, within GFF152 at 146.502 kb on - strand, within GFF152 at 146.502 kb on - strand, within GFF152 at 146.533 kb on + strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.539 kb on - strand, within GFF152 at 146.594 kb on - strand, within GFF152 at 146.604 kb on - strand, within GFF152 at 146.631 kb on + strand, within GFF152 at 146.631 kb on + strand, within GFF152 at 146.639 kb on - strand, within GFF152 at 146.639 kb on - strand, within GFF152 at 146.658 kb on + strand, within GFF152 at 146.658 kb on + strand, within GFF152 at 146.677 kb on + strand, within GFF152 at 146.706 kb on + strand, within GFF152 at 146.752 kb on + strand, within GFF152 at 146.753 kb on - strand, within GFF152 at 146.793 kb on - strand, within GFF152 at 146.799 kb on + strand, within GFF152 at 146.817 kb on - strand, within GFF152 at 146.826 kb on - strand, within GFF152 at 146.833 kb on - strand, within GFF152 at 146.833 kb on - strand, within GFF152 at 146.838 kb on + strand, within GFF152 at 146.841 kb on - strand, within GFF152 at 146.860 kb on + strand, within GFF152 at 146.864 kb on + strand, within GFF152 at 146.935 kb on + strand, within GFF152 at 146.961 kb on - strand, within GFF152 at 147.016 kb on + strand at 147.021 kb on + strand at 147.024 kb on - strand at 147.029 kb on - strand at 147.038 kb on - strand at 147.070 kb on + strand at 147.070 kb on + strand at 147.070 kb on + strand at 147.070 kb on + strand at 147.070 kb on + strand at 147.078 kb on - strand at 147.078 kb on - strand at 147.078 kb on - strand at 147.078 kb on - strand at 147.085 kb on + strand at 147.091 kb on + strand at 147.152 kb on - strand at 147.165 kb on + strand at 147.165 kb on + strand at 147.173 kb on - strand at 147.173 kb on - strand at 147.180 kb on + strand at 147.185 kb on + strand at 147.188 kb on - strand at 147.192 kb on - strand at 147.210 kb on + strand at 147.260 kb on + strand, within GFF153 at 147.265 kb on + strand, within GFF153 at 147.270 kb on + strand, within GFF153 at 147.284 kb on + strand, within GFF153 at 147.284 kb on + strand, within GFF153 at 147.292 kb on - strand, within GFF153 at 147.292 kb on - strand, within GFF153 at 147.297 kb on + strand, within GFF153 at 147.314 kb on + strand, within GFF153 at 147.355 kb on + strand, within GFF153 at 147.362 kb on + strand, within GFF153 at 147.362 kb on + strand, within GFF153 at 147.362 kb on + strand, within GFF153 at 147.362 kb on + strand, within GFF153 at 147.362 kb on + strand, within GFF153 at 147.362 kb on + strand, within GFF153 at 147.363 kb on - strand, within GFF153 at 147.370 kb on - strand, within GFF153 at 147.370 kb on - strand, within GFF153 at 147.370 kb on - strand, within GFF153 at 147.372 kb on + strand, within GFF153 at 147.380 kb on - strand, within GFF153 at 147.392 kb on - strand, within GFF153 at 147.457 kb on + strand, within GFF153 at 147.478 kb on + strand, within GFF153 at 147.478 kb on + strand, within GFF153 at 147.479 kb on + strand, within GFF153 at 147.486 kb on - strand, within GFF153 at 147.486 kb on - strand, within GFF153 at 147.528 kb on + strand, within GFF153 at 147.538 kb on - strand, within GFF153 at 147.554 kb on + strand, within GFF153 at 147.595 kb on - strand, within GFF153 at 147.598 kb on + strand, within GFF153 at 147.621 kb on - strand, within GFF153 at 147.621 kb on - strand, within GFF153 at 147.679 kb on + strand, within GFF153 at 147.679 kb on + strand, within GFF153 at 147.679 kb on + strand, within GFF153 at 147.684 kb on + strand, within GFF153 at 147.719 kb on - strand, within GFF153 at 147.729 kb on - strand, within GFF153 at 147.775 kb on + strand, within GFF153 at 147.780 kb on + strand, within GFF153 at 147.783 kb on - strand, within GFF153 at 147.788 kb on - strand, within GFF153 at 147.788 kb on - strand, within GFF153 at 147.824 kb on + strand, within GFF153 at 147.824 kb on + strand, within GFF153 at 147.824 kb on + strand, within GFF153 at 147.832 kb on - strand, within GFF153 at 147.832 kb on - strand, within GFF153 at 147.832 kb on - strand, within GFF153 at 147.832 kb on - strand, within GFF153 at 147.865 kb on + strand, within GFF153 at 147.889 kb on - strand, within GFF153 at 147.908 kb on + strand, within GFF153 at 147.935 kb on + strand, within GFF153 at 147.943 kb on - strand, within GFF153 at 147.949 kb on + strand, within GFF153 at 147.949 kb on + strand, within GFF153 at 147.965 kb on + strand, within GFF153 at 147.973 kb on - strand, within GFF153 at 147.983 kb on + strand, within GFF153 at 148.024 kb on + strand, within GFF153 at 148.024 kb on + strand, within GFF153 at 148.027 kb on + strand, within GFF153 at 148.028 kb on + strand, within GFF153 at 148.028 kb on + strand, within GFF153 at 148.028 kb on + strand, within GFF153 at 148.028 kb on + strand, within GFF153 at 148.032 kb on + strand, within GFF153 at 148.034 kb on + strand, within GFF153 at 148.036 kb on - strand, within GFF153 at 148.036 kb on - strand, within GFF153 at 148.036 kb on - strand, within GFF153 at 148.042 kb on - strand, within GFF153 at 148.042 kb on - strand, within GFF153 at 148.059 kb on - strand, within GFF153 at 148.083 kb on - strand, within GFF153
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 144,910 - +0.6 144,910 - +0.4 144,946 - +1.4 145,058 - +0.1 145,104 + -0.0 145,104 - -2.0 145,104 - +0.7 145,104 - +0.7 145,104 - +0.8 145,111 + +0.8 145,112 - -1.5 145,142 + GFF149 0.23 -1.0 145,153 + GFF149 0.28 -0.4 145,164 + GFF149 0.34 -0.5 145,187 + GFF149 0.47 -1.2 145,187 + GFF149 0.47 +0.0 145,192 + GFF149 0.49 -0.7 145,200 + GFF149 0.54 +0.3 145,231 + GFF149 0.70 +0.7 145,247 - GFF149 0.79 -0.7 145,247 - GFF149 0.79 -0.9 145,247 - GFF149 0.79 -0.7 145,247 - GFF149 0.79 +0.4 145,298 - +1.4 145,306 - -0.8 145,382 - GFF150 0.48 -0.8 145,384 + GFF150 0.50 -0.1 145,386 + GFF150 0.51 -0.5 145,392 - GFF150 0.56 +0.8 145,465 + +0.3 145,470 + -0.1 145,470 + -1.3 145,470 + -1.0 145,473 - -1.6 145,473 - +1.3 145,475 + +0.4 145,478 - +0.5 145,480 + -1.2 145,480 + -1.6 145,485 + +0.1 145,488 - -2.2 145,488 - +1.0 145,488 - +2.1 145,488 - -0.3 145,488 - +0.8 145,488 - -0.3 145,493 - -1.0 145,493 - +0.3 145,507 + -0.9 145,515 - -0.8 145,515 - +0.8 145,579 + +1.4 145,582 + -0.7 145,731 + -2.1 145,736 + +0.5 145,736 + -1.2 145,736 + +0.2 145,739 - +0.1 145,739 - -1.6 145,742 - -0.3 145,744 - +0.7 145,744 - +0.4 145,744 - -0.2 145,757 - -0.3 145,841 - -1.4 145,922 + +0.6 145,935 - -0.2 145,939 - -0.4 145,959 - -0.4 145,991 - GFF152 0.12 -2.6 146,016 - GFF152 0.14 +0.4 146,032 - GFF152 0.15 +0.2 146,052 + GFF152 0.17 -1.2 146,159 + GFF152 0.26 -0.6 146,159 + GFF152 0.26 -0.4 146,164 + GFF152 0.26 -1.8 146,231 + GFF152 0.31 -1.0 146,231 + GFF152 0.31 +1.3 146,231 + GFF152 0.31 +1.1 146,241 + GFF152 0.32 +0.4 146,262 + GFF152 0.34 -0.7 146,262 + GFF152 0.34 -1.5 146,264 - GFF152 0.34 +0.1 146,268 - GFF152 0.34 -1.4 146,272 + GFF152 0.35 -2.2 146,284 + GFF152 0.36 +1.6 146,326 - GFF152 0.39 +1.4 146,345 - GFF152 0.40 +0.7 146,345 - GFF152 0.40 -2.3 146,345 - GFF152 0.40 +0.6 146,346 - GFF152 0.41 +0.1 146,348 - GFF152 0.41 -1.0 146,358 - GFF152 0.41 -0.4 146,388 + GFF152 0.44 -1.8 146,408 - GFF152 0.45 -0.4 146,411 - GFF152 0.46 -0.4 146,453 + GFF152 0.49 -0.2 146,461 - GFF152 0.50 +0.1 146,468 + GFF152 0.50 +0.1 146,494 + GFF152 0.52 -0.1 146,494 + GFF152 0.52 +0.1 146,494 + GFF152 0.52 +0.2 146,494 + GFF152 0.52 -0.2 146,502 - GFF152 0.53 +0.8 146,502 - GFF152 0.53 -1.5 146,502 - GFF152 0.53 -0.9 146,533 + GFF152 0.55 +0.1 146,539 - GFF152 0.56 +0.4 146,539 - GFF152 0.56 -0.1 146,539 - GFF152 0.56 +0.6 146,539 - GFF152 0.56 -0.0 146,539 - GFF152 0.56 -1.2 146,539 - GFF152 0.56 -1.7 146,539 - GFF152 0.56 -0.1 146,539 - GFF152 0.56 +0.1 146,594 - GFF152 0.60 +0.1 146,604 - GFF152 0.61 -1.4 146,631 + GFF152 0.63 -0.1 146,631 + GFF152 0.63 -1.7 146,639 - GFF152 0.64 -0.7 146,639 - GFF152 0.64 -0.9 146,658 + GFF152 0.65 +0.2 146,658 + GFF152 0.65 +0.2 146,677 + GFF152 0.67 -0.8 146,706 + GFF152 0.69 +0.0 146,752 + GFF152 0.73 +0.9 146,753 - GFF152 0.73 -2.0 146,793 - GFF152 0.76 -1.6 146,799 + GFF152 0.77 +0.2 146,817 - GFF152 0.78 -0.8 146,826 - GFF152 0.79 +0.2 146,833 - GFF152 0.79 -1.0 146,833 - GFF152 0.79 -2.2 146,838 + GFF152 0.80 -0.8 146,841 - GFF152 0.80 -0.5 146,860 + GFF152 0.81 +1.1 146,864 + GFF152 0.82 +0.4 146,935 + GFF152 0.87 -0.4 146,961 - GFF152 0.90 +1.7 147,016 + -0.6 147,021 + -2.4 147,024 - +0.6 147,029 - -0.3 147,038 - +2.0 147,070 + -0.2 147,070 + -0.2 147,070 + -2.2 147,070 + -1.0 147,070 + +0.5 147,078 - +0.2 147,078 - -0.5 147,078 - -1.1 147,078 - -0.8 147,085 + -1.2 147,091 + -1.0 147,152 - -0.5 147,165 + +1.0 147,165 + -0.2 147,173 - -0.2 147,173 - +0.1 147,180 + -0.8 147,185 + +0.1 147,188 - -0.1 147,192 - +1.9 147,210 + -0.0 147,260 + GFF153 0.12 -0.3 147,265 + GFF153 0.12 -0.3 147,270 + GFF153 0.13 +0.3 147,284 + GFF153 0.14 -0.4 147,284 + GFF153 0.14 +0.7 147,292 - GFF153 0.14 -0.1 147,292 - GFF153 0.14 -0.2 147,297 + GFF153 0.14 -1.9 147,314 + GFF153 0.16 -0.0 147,355 + GFF153 0.19 -1.7 147,362 + GFF153 0.19 -0.7 147,362 + GFF153 0.19 -1.0 147,362 + GFF153 0.19 +1.0 147,362 + GFF153 0.19 -1.9 147,362 + GFF153 0.19 -0.1 147,362 + GFF153 0.19 +0.6 147,363 - GFF153 0.19 -1.5 147,370 - GFF153 0.20 +0.4 147,370 - GFF153 0.20 -0.7 147,370 - GFF153 0.20 +0.1 147,372 + GFF153 0.20 +1.2 147,380 - GFF153 0.20 -0.4 147,392 - GFF153 0.21 +0.1 147,457 + GFF153 0.26 +0.6 147,478 + GFF153 0.27 -0.1 147,478 + GFF153 0.27 -0.7 147,479 + GFF153 0.27 -0.7 147,486 - GFF153 0.28 +1.7 147,486 - GFF153 0.28 -0.8 147,528 + GFF153 0.30 -0.7 147,538 - GFF153 0.31 -0.5 147,554 + GFF153 0.32 -1.8 147,595 - GFF153 0.35 -1.2 147,598 + GFF153 0.35 -0.3 147,621 - GFF153 0.37 +0.3 147,621 - GFF153 0.37 +1.2 147,679 + GFF153 0.41 -1.3 147,679 + GFF153 0.41 -0.0 147,679 + GFF153 0.41 -0.5 147,684 + GFF153 0.41 -0.9 147,719 - GFF153 0.44 -1.8 147,729 - GFF153 0.44 +0.4 147,775 + GFF153 0.48 +0.3 147,780 + GFF153 0.48 +0.5 147,783 - GFF153 0.48 -0.1 147,788 - GFF153 0.49 -0.0 147,788 - GFF153 0.49 +1.0 147,824 + GFF153 0.51 -0.0 147,824 + GFF153 0.51 +0.8 147,824 + GFF153 0.51 -0.0 147,832 - GFF153 0.52 -2.6 147,832 - GFF153 0.52 -0.7 147,832 - GFF153 0.52 -0.6 147,832 - GFF153 0.52 -1.8 147,865 + GFF153 0.54 +2.8 147,889 - GFF153 0.56 -0.7 147,908 + GFF153 0.57 +0.3 147,935 + GFF153 0.59 -0.8 147,943 - GFF153 0.59 -0.4 147,949 + GFF153 0.60 +0.5 147,949 + GFF153 0.60 +0.2 147,965 + GFF153 0.61 +1.1 147,973 - GFF153 0.61 +0.4 147,983 + GFF153 0.62 +0.9 148,024 + GFF153 0.65 +0.3 148,024 + GFF153 0.65 -1.4 148,027 + GFF153 0.65 +0.4 148,028 + GFF153 0.65 +0.9 148,028 + GFF153 0.65 -1.2 148,028 + GFF153 0.65 -0.1 148,028 + GFF153 0.65 -0.6 148,032 + GFF153 0.65 -0.2 148,034 + GFF153 0.66 +1.1 148,036 - GFF153 0.66 -1.2 148,036 - GFF153 0.66 +0.5 148,036 - GFF153 0.66 +0.6 148,042 - GFF153 0.66 -0.9 148,042 - GFF153 0.66 +0.1 148,059 - GFF153 0.67 -1.8 148,083 - GFF153 0.69 -0.3
Or see this region's nucleotide sequence