Strain Fitness in Sphingobium sp. HT1-2 around GFF152

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
144,902	-				-0.4
144,910	-				+0.5
144,910	-				+0.3
144,911	+				-1.8
144,946	-				-1.2
144,955	-				-0.5
144,976	-				+0.5
145,013	-				-1.5
145,050	+				-0.3
145,050	+				-1.7
145,058	-				-0.0
145,081	+				-0.6
145,083	+				+0.1
145,096	+				+1.1
145,104	+				-0.1
145,104	-				-0.0
145,104	-				-2.2
145,104	-				+0.6
145,104	-				+0.6
145,104	-				+0.7
145,111	+				+0.6
145,112	-				-1.6
145,119	-		GFF149	0.10	+1.0
145,142	+		GFF149	0.23	-1.2
145,150	-		GFF149	0.27	-2.3
145,153	+		GFF149	0.28	-0.6
145,161	-		GFF149	0.33	-1.3
145,164	+		GFF149	0.34	-0.7
145,175	-		GFF149	0.40	-0.3
145,187	+		GFF149	0.47	-1.3
145,187	+		GFF149	0.47	-0.1
145,192	+		GFF149	0.49	-0.1
145,192	+		GFF149	0.49	-0.8
145,200	+		GFF149	0.54	+0.1
145,231	+		GFF149	0.70	+0.6
145,239	+		GFF149	0.75	-0.5
145,239	+		GFF149	0.75	+0.6
145,239	+		GFF149	0.75	+0.1
145,239	+		GFF149	0.75	+1.5
145,247	-		GFF149	0.79	+0.8
145,247	-		GFF149	0.79	-1.0
145,247	-		GFF149	0.79	+0.2
145,275	+				-1.5
145,298	-				+1.3
145,300	+				-0.9
145,306	-				-0.9
145,316	-				-0.8
145,318	-				-1.8
145,318	-				-0.7
145,318	-				-2.0
145,353	-		GFF150	0.26	-2.6
145,374	+		GFF150	0.42	+1.2
145,382	-		GFF150	0.48	-1.0
145,382	-		GFF150	0.48	+0.4
145,382	-		GFF150	0.48	+1.2
145,382	-		GFF150	0.48	+0.2
145,382	-		GFF150	0.48	-2.8
145,384	+		GFF150	0.50	-1.5
145,384	+		GFF150	0.50	-0.2
145,386	+		GFF150	0.51	-0.6
145,386	-		GFF150	0.51	+0.2
145,392	-		GFF150	0.56	+0.7
145,409	+		GFF150	0.69	-0.4
145,460	+				-0.7
145,465	+				+0.2
145,470	+				-0.2
145,470	+				-1.4
145,470	+				-1.2
145,473	-				-1.2
145,473	-				-1.7
145,473	-				+1.1
145,473	-				+0.3
145,475	+				+0.2
145,478	-				+0.3
145,480	+				+1.0
145,480	+				-1.4
145,480	+				+0.3
145,480	+				+0.2
145,480	+				-1.7
145,480	+				+1.2
145,480	+				-0.6
145,480	+				-1.2
145,480	+				-1.0
145,480	+				-0.9
145,480	+				-0.2
145,485	+				-0.8
145,485	+				+0.3
145,485	+				+0.0
145,488	-				-2.3
145,488	-				+2.0
145,488	-				-0.4
145,488	-				-0.4
145,490	-				+0.0
145,493	-				+0.0
145,493	-				-1.1
145,493	-				+0.2
145,507	+				-1.0
145,515	-				-0.9
145,515	-				+0.7
145,548	-				-1.3
145,548	-				-1.4
145,548	-				+0.5
145,548	-				-1.4
145,548	-				-2.9
145,579	+				+1.3
145,583	+				-0.7
145,694	+				-0.2
145,731	+				-2.2
145,731	+				-0.4
145,736	+				+0.4
145,736	+				+0.1
145,736	+				-1.3
145,736	+				+0.0
145,739	-				-1.7
145,741	+				+0.2
145,742	-				-0.4
145,744	-				+0.5
145,744	-				-2.1
145,744	-				-0.3
145,747	+				-1.3
145,757	-				-0.4
145,806	+				-0.6
145,818	+				+2.0
145,841	-				-1.6
145,895	+				-0.4
145,920	-				-1.0
145,922	+				+0.5
145,933	+				-0.2
145,935	-				-0.3
145,939	-				-2.9
145,939	-				+1.1
145,939	-				-0.5
145,939	-				-0.8
145,959	-				-0.5
145,985	-		GFF152	0.12	+0.2
145,991	-		GFF152	0.12	-2.7
146,027	-		GFF152	0.15	+0.3
146,032	-		GFF152	0.15	+0.1
146,052	+		GFF152	0.17	-1.3
146,057	+		GFF152	0.17	+0.1
146,065	+		GFF152	0.18	-0.1
146,065	+		GFF152	0.18	+1.2
146,073	-		GFF152	0.19	-0.2
146,085	+		GFF152	0.20	+0.3
146,093	-		GFF152	0.20	-0.6
146,093	-		GFF152	0.20	-1.1
146,100	-		GFF152	0.21	-0.7
146,125	-		GFF152	0.23	-2.6
146,155	-		GFF152	0.25	+0.4
146,159	+		GFF152	0.26	-0.7
146,159	+		GFF152	0.26	-0.5
146,164	+		GFF152	0.26	-1.9
146,167	-		GFF152	0.26	-0.5
146,199	-		GFF152	0.29	+1.0
146,231	+		GFF152	0.31	-1.2
146,231	+		GFF152	0.31	-2.4
146,231	+		GFF152	0.31	+1.0
146,241	+		GFF152	0.32	-1.7
146,260	+		GFF152	0.34	+0.2
146,262	+		GFF152	0.34	-0.9
146,262	+		GFF152	0.34	-1.7
146,264	-		GFF152	0.34	-0.1
146,268	-		GFF152	0.34	-1.5
146,272	+		GFF152	0.35	-2.8
146,272	+		GFF152	0.35	-2.3
146,280	+		GFF152	0.35	-0.2
146,326	-		GFF152	0.39	+1.3
146,338	+		GFF152	0.40	-0.2
146,345	-		GFF152	0.40	+0.6
146,345	-		GFF152	0.40	-2.4
146,345	-		GFF152	0.40	+0.5
146,346	-		GFF152	0.41	+0.3
146,348	-		GFF152	0.41	-1.1
146,358	-		GFF152	0.41	-0.6
146,373	+		GFF152	0.43	+1.4
146,381	-		GFF152	0.43	-0.9
146,388	+		GFF152	0.44	-1.9
146,408	-		GFF152	0.45	-0.6
146,408	-		GFF152	0.45	+0.3
146,411	-		GFF152	0.46	-0.5
146,411	-		GFF152	0.46	-0.6
146,438	+		GFF152	0.48	-2.5
146,443	+		GFF152	0.48	-0.8
146,445	-		GFF152	0.48	+0.8
146,453	+		GFF152	0.49	+0.1
146,453	+		GFF152	0.49	-2.2
146,453	+		GFF152	0.49	-0.4
146,461	-		GFF152	0.50	-0.2
146,461	-		GFF152	0.50	-0.0
146,461	-		GFF152	0.50	-2.2
146,468	+		GFF152	0.50	-0.0
146,494	+		GFF152	0.52	-0.1
146,494	+		GFF152	0.52	-0.2
146,494	+		GFF152	0.52	+0.0
146,494	+		GFF152	0.52	-0.3
146,494	+		GFF152	0.52	+0.3
146,497	-		GFF152	0.53	-0.9
146,502	-		GFF152	0.53	-1.3
146,502	-		GFF152	0.53	+0.7
146,502	-		GFF152	0.53	+0.5
146,502	-		GFF152	0.53	-1.7
146,502	-		GFF152	0.53	-1.1
146,502	-		GFF152	0.53	+1.5
146,531	+		GFF152	0.55	+0.1
146,533	+		GFF152	0.55	+0.0
146,539	-		GFF152	0.56	-0.2
146,539	-		GFF152	0.56	+0.5
146,539	-		GFF152	0.56	-0.2
146,539	-		GFF152	0.56	-1.3
146,539	-		GFF152	0.56	-0.9
146,539	-		GFF152	0.56	-1.8
146,539	-		GFF152	0.56	-0.2
146,539	-		GFF152	0.56	-0.1
146,546	+		GFF152	0.56	+2.0
146,594	-		GFF152	0.60	-0.0
146,596	+		GFF152	0.60	-0.9
146,604	-		GFF152	0.61	-1.5
146,609	-		GFF152	0.61	+0.3
146,631	+		GFF152	0.63	-0.5
146,631	+		GFF152	0.63	-0.2
146,631	+		GFF152	0.63	-0.2
146,631	+		GFF152	0.63	-0.8
146,631	+		GFF152	0.63	-0.5
146,631	+		GFF152	0.63	-1.5
146,631	+		GFF152	0.63	-0.8
146,631	+		GFF152	0.63	-1.8
146,639	-		GFF152	0.64	+1.3
146,639	-		GFF152	0.64	+1.1
146,639	-		GFF152	0.64	+0.1
146,639	-		GFF152	0.64	-0.9
146,639	-		GFF152	0.64	+0.9
146,639	-		GFF152	0.64	-1.0
146,639	-		GFF152	0.64	+0.6
146,639	-		GFF152	0.64	-1.2
146,639	-		GFF152	0.64	-0.3
146,639	-		GFF152	0.64	+0.5
146,648	+		GFF152	0.65	+0.9
146,658	+		GFF152	0.65	+0.0
146,658	+		GFF152	0.65	+0.1
146,671	+		GFF152	0.66	+0.3
146,676	+		GFF152	0.67	+0.3
146,676	+		GFF152	0.67	-0.0
146,677	+		GFF152	0.67	-1.0
146,679	-		GFF152	0.67	-0.3
146,684	-		GFF152	0.67	-2.2
146,684	-		GFF152	0.67	+1.1
146,706	+		GFF152	0.69	-0.1
146,714	-		GFF152	0.70	+0.1
146,714	-		GFF152	0.70	+1.3
146,730	-		GFF152	0.71	-0.2
146,752	+		GFF152	0.73	+0.8
146,753	-		GFF152	0.73	-2.2
146,753	-		GFF152	0.73	-1.3
146,753	-		GFF152	0.73	-1.9
146,786	+		GFF152	0.76	+0.3
146,786	+		GFF152	0.76	-1.2
146,789	-		GFF152	0.76	-1.1
146,793	-		GFF152	0.76	-1.7
146,794	-		GFF152	0.76	+0.4
146,794	-		GFF152	0.76	+0.1
146,799	+		GFF152	0.77	+0.0
146,807	-		GFF152	0.77	+0.3
146,817	-		GFF152	0.78	-0.9
146,826	-		GFF152	0.79	+0.1
146,833	-		GFF152	0.79	-1.1
146,833	-		GFF152	0.79	-1.1
146,833	-		GFF152	0.79	-2.3
146,838	+		GFF152	0.80	-0.9
146,841	-		GFF152	0.80	-0.6
146,860	+		GFF152	0.81	+1.0
146,862	+		GFF152	0.82	-0.5
146,864	+		GFF152	0.82	+0.3
146,870	-		GFF152	0.82	-1.8
146,935	+		GFF152	0.87	-0.5
146,951	+		GFF152	0.89	+1.1
146,976	+				-2.2
147,016	+				-0.8
147,023	+				-0.2
147,024	-				+1.9
147,024	-				+0.5
147,029	-				+0.6
147,029	-				-0.4
147,070	+				-0.4
147,070	+				-0.4
147,070	+				-2.3
147,070	+				-0.9
147,070	+				-1.1
147,070	+				-0.6
147,070	+				+0.4
147,078	-				+0.1
147,078	-				-0.9
147,078	-				+0.9
147,078	-				-0.9
147,078	-				-0.7
147,078	-				+0.7
147,078	-				-1.2
147,078	-				-0.9
147,078	-				-0.5
147,078	-				-1.0
147,085	+				-1.3
147,087	+				-0.4
147,091	+				-1.2
147,144	+				+0.7
147,152	-				-0.6
147,165	+				+0.4
147,165	+				+0.8
147,165	+				+1.2
147,165	+				-0.3
147,165	+				+1.5
147,173	-				+0.8
147,173	-				-0.3
147,173	-				-0.1
147,180	+				-0.9
147,185	+				-0.0
147,185	+				-0.0
147,185	+				+0.8
147,188	-				-0.2
147,210	+				-0.2
147,260	+		GFF153	0.12	-0.4
147,260	+		GFF153	0.12	-0.5
147,265	+		GFF153	0.12	-0.4
147,270	+		GFF153	0.13	+0.1
147,270	+		GFF153	0.13	+1.7
147,270	+		GFF153	0.13	-2.1
147,270	+		GFF153	0.13	+0.2
147,278	-		GFF153	0.13	+0.2
147,278	-		GFF153	0.13	-1.5
147,284	+		GFF153	0.14	-0.5
147,292	-		GFF153	0.14	-0.3
147,292	-		GFF153	0.14	-0.8
147,292	-		GFF153	0.14	-0.3
147,297	+		GFF153	0.14	-2.1
147,314	+		GFF153	0.16	-0.2
147,322	-		GFF153	0.16	+1.0
147,355	+		GFF153	0.19	-1.8
147,362	+		GFF153	0.19	-0.8
147,362	+		GFF153	0.19	-1.2
147,362	+		GFF153	0.19	+0.9
147,362	+		GFF153	0.19	-2.0
147,362	+		GFF153	0.19	-0.2
147,362	+		GFF153	0.19	-1.3
147,362	+		GFF153	0.19	+0.4
147,363	-		GFF153	0.19	-1.6
147,370	-		GFF153	0.20	+0.3
147,370	-		GFF153	0.20	-2.2
147,370	-		GFF153	0.20	-0.0
147,372	+		GFF153	0.20	+1.0
147,380	-		GFF153	0.20	-0.5
147,380	-		GFF153	0.20	+1.2
147,392	-		GFF153	0.21	-0.0
147,457	+		GFF153	0.26	+0.5
147,464	+		GFF153	0.26	-0.2
147,465	-		GFF153	0.26	+0.0
147,478	+		GFF153	0.27	+0.7
147,478	+		GFF153	0.27	-0.2
147,478	+		GFF153	0.27	-0.8
147,479	+		GFF153	0.27	-0.9
147,486	-		GFF153	0.28	+0.9
147,486	-		GFF153	0.28	+1.6
147,486	-		GFF153	0.28	-0.3
147,486	-		GFF153	0.28	-1.0
147,510	+		GFF153	0.29	-1.2
147,518	+		GFF153	0.30	-0.2
147,528	+		GFF153	0.30	-0.9
147,530	+		GFF153	0.31	-1.3
147,531	-		GFF153	0.31	+0.8
147,538	-		GFF153	0.31	-0.6
147,554	+		GFF153	0.32	-2.1
147,554	+		GFF153	0.32	-1.9
147,595	-		GFF153	0.35	-1.3
147,598	+		GFF153	0.35	-0.4
147,605	+		GFF153	0.36	-0.1
147,613	+		GFF153	0.36	-1.2
147,613	+		GFF153	0.36	+0.9
147,613	+		GFF153	0.36	-0.1
147,621	-		GFF153	0.37	+0.2
147,621	-		GFF153	0.37	+0.7
147,621	-		GFF153	0.37	+1.1
147,654	-		GFF153	0.39	+0.4
147,656	+		GFF153	0.39	+0.5
147,668	+		GFF153	0.40	-0.4
147,679	+		GFF153	0.41	-1.4
147,679	+		GFF153	0.41	-0.2
147,679	+		GFF153	0.41	-0.6
147,707	+		GFF153	0.43	-0.8
147,719	-		GFF153	0.44	-1.9
147,728	+		GFF153	0.44	-0.5
147,729	-		GFF153	0.44	+0.3
147,733	+		GFF153	0.45	-1.1
147,775	+		GFF153	0.48	-1.9
147,775	+		GFF153	0.48	+0.2
147,775	+		GFF153	0.48	-1.5
147,775	+		GFF153	0.48	-1.4
147,775	+		GFF153	0.48	+1.1
147,780	+		GFF153	0.48	+0.4
147,783	-		GFF153	0.48	-0.2
147,788	-		GFF153	0.49	-0.2
147,788	-		GFF153	0.49	+0.8
147,791	+		GFF153	0.49	+0.8
147,793	-		GFF153	0.49	+0.9
147,824	+		GFF153	0.51	-0.9
147,824	+		GFF153	0.51	-0.9
147,824	+		GFF153	0.51	-0.2
147,824	+		GFF153	0.51	+0.7
147,824	+		GFF153	0.51	-0.1
147,824	+		GFF153	0.51	+0.3
147,832	-		GFF153	0.52	-2.7
147,832	-		GFF153	0.52	-0.8
147,832	-		GFF153	0.52	-0.8
147,832	-		GFF153	0.52	-1.9
147,832	-		GFF153	0.52	-2.8
147,889	-		GFF153	0.56	-0.9
147,908	+		GFF153	0.57	+0.2
147,916	-		GFF153	0.57	-0.5
147,935	+		GFF153	0.59	-0.9
147,949	+		GFF153	0.60	+0.4
147,949	+		GFF153	0.60	+0.1
147,949	+		GFF153	0.60	+0.3
147,965	+		GFF153	0.61	+1.0
147,973	-		GFF153	0.61	+0.3
148,024	+		GFF153	0.65	+0.2
148,024	+		GFF153	0.65	-1.6
148,028	+		GFF153	0.65	+0.8
148,028	+		GFF153	0.65	-1.3
148,028	+		GFF153	0.65	-0.6
148,028	+		GFF153	0.65	-0.2
148,032	+		GFF153	0.65	-0.3
148,034	+		GFF153	0.66	+0.9
148,036	-		GFF153	0.66	+0.9
148,036	-		GFF153	0.66	-1.3
148,036	-		GFF153	0.66	+0.4
148,036	-		GFF153	0.66	-1.5
148,036	-		GFF153	0.66	+0.5
148,041	-		GFF153	0.66	-0.5
148,042	-		GFF153	0.66	-0.1
148,059	-		GFF153	0.67	-1.9
148,083	-		GFF153	0.69	-0.4