Strain Fitness in Sphingobium sp. HT1-2 around GFF1516

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,546,349	-				-1.8
1,546,404	+				+1.3
1,546,437	+				+1.1
1,546,437	+				+1.1
1,546,437	+				+0.6
1,546,437	+				+0.3
1,546,437	+				+1.1
1,546,437	+				-0.2
1,546,442	+				-0.9
1,546,442	+				+1.2
1,546,442	+				-0.7
1,546,445	-				-1.2
1,546,445	-				-0.2
1,546,445	-				-0.7
1,546,445	-				-0.3
1,546,445	-				+0.5
1,546,445	-				-1.3
1,546,445	-				+0.6
1,546,445	-				-2.2
1,546,445	-				+0.2
1,546,445	-				+0.3
1,546,450	-				-0.9
1,546,450	-				+0.8
1,546,450	-				+0.2
1,546,450	-				-0.0
1,546,450	-				+1.5
1,546,461	+				+0.6
1,546,466	+				-0.7
1,546,466	+				-0.5
1,546,466	+				-0.6
1,546,466	+				+1.7
1,546,466	+				-1.5
1,546,570	+				+1.5
1,546,570	-				+1.5
1,546,571	-				+0.1
1,546,575	+				-0.1
1,546,578	-				+0.0
1,546,602	-				+1.0
1,546,606	+				-0.1
1,546,627	+		GFF1516	0.11	+0.5
1,546,628	+		GFF1516	0.12	+0.1
1,546,634	+		GFF1516	0.12	-0.7
1,546,635	-		GFF1516	0.13	-0.0
1,546,648	+		GFF1516	0.14	+0.3
1,546,657	+		GFF1516	0.16	-1.4
1,546,657	+		GFF1516	0.16	-1.1
1,546,657	+		GFF1516	0.16	-0.1
1,546,657	+		GFF1516	0.16	+0.8
1,546,665	-		GFF1516	0.17	-1.0
1,546,665	-		GFF1516	0.17	+0.2
1,546,674	+		GFF1516	0.18	+0.1
1,546,674	+		GFF1516	0.18	+0.5
1,546,679	+		GFF1516	0.19	-0.0
1,546,682	-		GFF1516	0.19	-0.6
1,546,682	-		GFF1516	0.19	+0.1
1,546,682	-		GFF1516	0.19	+0.9
1,546,687	-		GFF1516	0.20	-0.1
1,546,687	-		GFF1516	0.20	+0.3
1,546,705	+		GFF1516	0.22	-0.2
1,546,711	+		GFF1516	0.23	+0.7
1,546,713	-		GFF1516	0.23	-0.3
1,546,713	-		GFF1516	0.23	+0.2
1,546,723	-		GFF1516	0.25	+0.7
1,546,736	+		GFF1516	0.27	+0.3
1,546,743	+		GFF1516	0.28	+0.2
1,546,744	+		GFF1516	0.28	+0.1
1,546,744	+		GFF1516	0.28	-0.1
1,546,744	-		GFF1516	0.28	-0.2
1,546,751	-		GFF1516	0.29	-0.9
1,546,753	+		GFF1516	0.29	-0.2
1,546,753	+		GFF1516	0.29	-0.4
1,546,761	-		GFF1516	0.30	-0.4
1,546,774	+		GFF1516	0.32	+1.9
1,546,797	+		GFF1516	0.35	-0.1
1,546,808	-		GFF1516	0.37	+0.3
1,546,815	+		GFF1516	0.38	+0.9
1,546,823	-		GFF1516	0.39	-1.0
1,546,835	+		GFF1516	0.40	-0.7
1,546,859	-		GFF1516	0.44	-0.0
1,546,882	+		GFF1516	0.47	+0.3
1,546,883	+		GFF1516	0.47	-0.5
1,546,890	-		GFF1516	0.48	+0.7
1,546,898	+		GFF1516	0.49	+0.7
1,546,898	+		GFF1516	0.49	-0.9
1,546,902	+		GFF1516	0.50	+0.3
1,546,902	+		GFF1516	0.50	+0.2
1,546,902	+		GFF1516	0.50	-1.4
1,546,902	+		GFF1516	0.50	-0.7
1,546,906	-		GFF1516	0.50	-1.9
1,546,906	-		GFF1516	0.50	+0.4
1,546,906	-		GFF1516	0.50	+0.9
1,546,906	-		GFF1516	0.50	+0.6
1,546,906	-		GFF1516	0.50	+0.3
1,546,906	-		GFF1516	0.50	+0.7
1,546,906	-		GFF1516	0.50	+0.6
1,546,906	-		GFF1516	0.50	-0.7
1,546,906	-		GFF1516	0.50	+0.1
1,546,906	-		GFF1516	0.50	-0.0
1,546,906	-		GFF1516	0.50	-1.6
1,546,910	-		GFF1516	0.51	-2.1
1,546,910	-		GFF1516	0.51	-0.9
1,546,919	+		GFF1516	0.52	+0.1
1,546,927	-		GFF1516	0.53	-2.4
1,546,927	-		GFF1516	0.53	-1.9
1,546,949	+		GFF1516	0.56	-1.3
1,546,952	-		GFF1516	0.57	+1.1
1,547,005	-		GFF1516	0.64	-0.1
1,547,006	+		GFF1516	0.64	-1.0
1,547,006	+		GFF1516	0.64	-0.6
1,547,006	+		GFF1516	0.64	+0.1
1,547,011	+		GFF1516	0.65	-1.4
1,547,014	-		GFF1516	0.65	+0.2
1,547,024	+		GFF1516	0.67	-0.5
1,547,029	+		GFF1516	0.68	+0.1
1,547,047	+		GFF1516	0.70	-1.5
1,547,075	+		GFF1516	0.74	-1.4
1,547,110	-		GFF1516	0.79	+1.1
1,547,127	+		GFF1516	0.81	-1.8
1,547,127	+		GFF1516	0.81	-2.0
1,547,127	+		GFF1516	0.81	-2.0
1,547,127	+		GFF1516	0.81	+1.1
1,547,127	+		GFF1516	0.81	-1.5
1,547,127	+		GFF1516	0.81	-0.4
1,547,127	+		GFF1516	0.81	-0.5
1,547,127	+		GFF1516	0.81	+0.4
1,547,127	+		GFF1516	0.81	-0.2
1,547,127	+		GFF1516	0.81	-1.5
1,547,127	+		GFF1516	0.81	+0.2
1,547,127	+		GFF1516	0.81	-1.7
1,547,127	+		GFF1516	0.81	+2.1
1,547,127	+		GFF1516	0.81	-1.1
1,547,135	-		GFF1516	0.82	+1.0
1,547,135	-		GFF1516	0.82	-0.1
1,547,135	-		GFF1516	0.82	-0.7
1,547,135	-		GFF1516	0.82	+0.2
1,547,135	-		GFF1516	0.82	+0.1
1,547,135	-		GFF1516	0.82	-0.6
1,547,135	-		GFF1516	0.82	+0.8
1,547,135	-		GFF1516	0.82	-2.0
1,547,135	-		GFF1516	0.82	-0.2
1,547,135	-		GFF1516	0.82	+0.8
1,547,135	-		GFF1516	0.82	-1.5
1,547,135	-		GFF1516	0.82	-0.6
1,547,135	-		GFF1516	0.82	-2.7
1,547,135	-		GFF1516	0.82	+0.1
1,547,135	-		GFF1516	0.82	+0.3
1,547,135	-		GFF1516	0.82	-2.0
1,547,135	-		GFF1516	0.82	+0.8
1,547,135	-		GFF1516	0.82	+0.1
1,547,140	-		GFF1516	0.83	-0.2
1,547,145	-		GFF1516	0.84	+0.1
1,547,160	-		GFF1516	0.86	+1.2
1,547,163	+		GFF1516	0.86	-1.2
1,547,170	-		GFF1516	0.87	-1.4
1,547,171	-		GFF1516	0.87	-1.5
1,547,171	-		GFF1516	0.87	-0.2
1,547,171	-		GFF1516	0.87	+1.3
1,547,197	+				-0.1
1,547,197	+				-1.4
1,547,197	+				+0.7
1,547,197	+				-1.8
1,547,197	+				-0.7
1,547,197	+				-0.2
1,547,205	-				-1.6
1,547,210	-				+0.5
1,547,215	-				-0.9
1,547,219	+				-1.0
1,547,229	+				-0.8
1,547,256	+				+0.3
1,547,272	+				-0.1
1,547,272	+				+1.3
1,547,273	-				+0.0
1,547,273	-				-0.4
1,547,278	-				-1.5
1,547,289	+				-1.9
1,547,302	-				+0.4
1,547,305	+				-1.2
1,547,313	-				-1.2
1,547,313	-				-2.5
1,547,323	+				-1.9
1,547,323	+				-1.8
1,547,331	-				+0.9
1,547,331	-				-0.4
1,547,351	+		GFF1517	0.10	+0.9
1,547,370	-		GFF1517	0.13	+0.9
1,547,401	+		GFF1517	0.17	+1.3
1,547,411	+		GFF1517	0.19	-0.4
1,547,411	+		GFF1517	0.19	-2.6
1,547,417	+		GFF1517	0.19	-0.8
1,547,419	-		GFF1517	0.20	-0.0
1,547,419	-		GFF1517	0.20	-1.7
1,547,436	-		GFF1517	0.22	-0.9
1,547,455	+		GFF1517	0.25	+0.5
1,547,455	+		GFF1517	0.25	-2.5
1,547,469	+		GFF1517	0.26	+0.3
1,547,469	+		GFF1517	0.26	+0.5
1,547,474	+		GFF1517	0.27	-0.6
1,547,477	-		GFF1517	0.28	-2.0
1,547,479	+		GFF1517	0.28	-0.5
1,547,479	+		GFF1517	0.28	-1.7
1,547,479	+		GFF1517	0.28	-2.3
1,547,487	-		GFF1517	0.29	+0.3
1,547,487	-		GFF1517	0.29	+0.8
1,547,487	-		GFF1517	0.29	+0.9
1,547,492	-		GFF1517	0.30	+0.3
1,547,493	+		GFF1517	0.30	+0.2
1,547,493	+		GFF1517	0.30	-1.3
1,547,498	+		GFF1517	0.30	-1.7
1,547,501	-		GFF1517	0.31	-0.8
1,547,501	-		GFF1517	0.31	-2.6
1,547,513	+		GFF1517	0.32	+0.8
1,547,513	+		GFF1517	0.32	-1.6
1,547,521	-		GFF1517	0.33	-0.6
1,547,564	+		GFF1517	0.39	-0.0
1,547,569	+		GFF1517	0.40	+0.8
1,547,605	+		GFF1517	0.45	+1.5
1,547,617	-		GFF1517	0.46	-2.2
1,547,622	-		GFF1517	0.47	-0.5
1,547,635	+		GFF1517	0.49	-2.5
1,547,635	+		GFF1517	0.49	-0.3
1,547,635	+		GFF1517	0.49	+0.6
1,547,643	-		GFF1517	0.50	-0.9
1,547,643	-		GFF1517	0.50	-0.6
1,547,694	+		GFF1517	0.57	+0.3
1,547,697	-		GFF1517	0.57	-0.2
1,547,709	+		GFF1517	0.59	-0.0
1,547,709	+		GFF1517	0.59	-0.6
1,547,709	+		GFF1517	0.59	-1.6
1,547,709	+		GFF1517	0.59	-0.9
1,547,709	+		GFF1517	0.59	-0.3
1,547,717	-		GFF1517	0.60	-1.6
1,547,717	-		GFF1517	0.60	-0.2
1,547,717	-		GFF1517	0.60	-0.6
1,547,717	-		GFF1517	0.60	+0.1
1,547,717	-		GFF1517	0.60	-0.9
1,547,717	-		GFF1517	0.60	-1.0
1,547,717	-		GFF1517	0.60	+2.1
1,547,719	-		GFF1517	0.60	-0.0
1,547,719	-		GFF1517	0.60	-0.8
1,547,719	-		GFF1517	0.60	-0.1
1,547,719	-		GFF1517	0.60	-1.7
1,547,747	-		GFF1517	0.64	-2.4
1,547,754	+		GFF1517	0.65	-0.9
1,547,779	+		GFF1517	0.68	-1.5
1,547,779	+		GFF1517	0.68	+0.8
1,547,787	-		GFF1517	0.70	-1.7
1,547,787	-		GFF1517	0.70	-1.8
1,547,794	-		GFF1517	0.70	-0.2
1,547,794	-		GFF1517	0.70	+0.5
1,547,796	+		GFF1517	0.71	-0.7
1,547,833	+		GFF1517	0.76	-1.2
1,547,845	-		GFF1517	0.77	+0.0
1,547,850	+		GFF1517	0.78	+0.3
1,547,868	+		GFF1517	0.80	-0.3
1,547,868	+		GFF1517	0.80	-0.9
1,547,868	+		GFF1517	0.80	-0.2
1,547,875	+		GFF1517	0.81	-1.4
1,547,876	-		GFF1517	0.82	+0.1
1,547,876	-		GFF1517	0.82	-1.2
1,547,876	-		GFF1517	0.82	-0.2
1,547,883	-		GFF1517	0.83	-1.4
1,547,888	-		GFF1517	0.83	-0.7
1,547,890	+		GFF1517	0.83	-1.3
1,547,891	-		GFF1517	0.84	-3.5
1,547,898	-		GFF1517	0.85	-0.8
1,547,898	-		GFF1517	0.85	-0.1
1,547,904	+		GFF1517	0.85	-0.1
1,547,911	-		GFF1517	0.86	-0.4
1,547,924	+		GFF1517	0.88	+1.2
1,547,929	+		GFF1517	0.89	-1.5
1,547,932	-		GFF1517	0.89	+0.1
1,547,937	-		GFF1517	0.90	-1.7
1,547,942	-				-1.7
1,547,978	-				+0.1
1,547,981	+				+0.3
1,547,981	+				+1.4
1,547,983	-				+0.4
1,547,984	-				-2.7
1,547,984	-				-1.0
1,547,989	-				-0.7
1,547,993	+				-0.1
1,548,001	+				-0.6
1,548,001	+				-0.4
1,548,001	+				-0.4
1,548,009	-				-0.7
1,548,009	-				-0.1
1,548,013	+				-1.0
1,548,021	+				-0.7
1,548,029	-				-0.6
1,548,039	-				+0.5
1,548,039	-				-0.1
1,548,055	+				+1.1
1,548,068	-				-0.4
1,548,068	-				-0.1
1,548,073	-				-0.7
1,548,073	-				-1.6
1,548,111	-				-0.0
1,548,155	+		GFF1518	0.13	+0.6
1,548,155	-		GFF1518	0.13	+0.5
1,548,160	+		GFF1518	0.14	-0.6
1,548,163	-		GFF1518	0.14	+1.8
1,548,168	-		GFF1518	0.15	-0.0
1,548,176	+		GFF1518	0.16	-0.6
1,548,176	+		GFF1518	0.16	+0.4
1,548,179	-		GFF1518	0.16	-1.0
1,548,181	+		GFF1518	0.16	-0.7
1,548,192	+		GFF1518	0.18	-2.0
1,548,192	+		GFF1518	0.18	+0.5
1,548,200	-		GFF1518	0.19	-0.8
1,548,200	-		GFF1518	0.19	-1.6
1,548,209	+		GFF1518	0.20	-0.5
1,548,209	+		GFF1518	0.20	-0.2
1,548,219	+		GFF1518	0.21	-1.5
1,548,227	-		GFF1518	0.22	+0.1
1,548,227	-		GFF1518	0.22	-0.7
1,548,227	-		GFF1518	0.22	+0.2
1,548,232	-		GFF1518	0.22	+1.3
1,548,246	-		GFF1518	0.24	-0.3
1,548,256	-		GFF1518	0.25	-0.2
1,548,256	-		GFF1518	0.25	-2.0
1,548,256	-		GFF1518	0.25	+0.1
1,548,256	-		GFF1518	0.25	-0.2
1,548,257	-		GFF1518	0.25	-0.6
1,548,259	+		GFF1518	0.25	+0.3
1,548,259	+		GFF1518	0.25	-0.8
1,548,259	+		GFF1518	0.25	-1.4