Strain Fitness in Sphingobium sp. HT1-2 around GFF1437

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,464,872	+				-1.8
1,464,948	+				-0.4
1,464,970	-				+1.1
1,464,977	+				-1.1
1,464,985	-				+0.4
1,464,985	-				+0.1
1,464,985	-				+0.2
1,464,985	-				-0.2
1,465,017	+				-0.4
1,465,017	+				+0.4
1,465,017	-				-0.8
1,465,030	-				-0.1
1,465,030	-				-1.0
1,465,030	-				-0.6
1,465,033	+				-1.1
1,465,049	-				+0.3
1,465,051	-				-2.3
1,465,051	-				-0.5
1,465,087	+				-1.3
1,465,088	-				+0.5
1,465,095	-				-0.3
1,465,105	+		GFF1436	0.10	-0.3
1,465,118	+		GFF1436	0.12	+0.5
1,465,163	+		GFF1436	0.17	+0.5
1,465,171	-		GFF1436	0.18	-0.4
1,465,182	-		GFF1436	0.19	-2.0
1,465,182	-		GFF1436	0.19	-0.4
1,465,189	-		GFF1436	0.20	+1.3
1,465,233	-		GFF1436	0.26	-1.8
1,465,238	-		GFF1436	0.26	+0.7
1,465,249	+		GFF1436	0.27	+0.6
1,465,255	+		GFF1436	0.28	+0.1
1,465,282	-		GFF1436	0.31	-0.1
1,465,297	+		GFF1436	0.33	+0.5
1,465,301	-		GFF1436	0.34	+1.2
1,465,316	-		GFF1436	0.35	-1.1
1,465,346	+		GFF1436	0.39	-1.8
1,465,346	+		GFF1436	0.39	-0.4
1,465,346	+		GFF1436	0.39	-0.3
1,465,346	+		GFF1436	0.39	-0.1
1,465,354	-		GFF1436	0.40	-1.6
1,465,371	+		GFF1436	0.42	+0.9
1,465,371	+		GFF1436	0.42	+0.7
1,465,371	+		GFF1436	0.42	+1.1
1,465,371	+		GFF1436	0.42	-2.4
1,465,371	+		GFF1436	0.42	-1.2
1,465,371	+		GFF1436	0.42	-1.8
1,465,371	+		GFF1436	0.42	+0.4
1,465,375	+		GFF1436	0.43	+0.9
1,465,375	+		GFF1436	0.43	-1.3
1,465,376	+		GFF1436	0.43	-1.8
1,465,376	+		GFF1436	0.43	+0.1
1,465,376	+		GFF1436	0.43	+0.2
1,465,379	-		GFF1436	0.43	+1.2
1,465,379	-		GFF1436	0.43	-1.7
1,465,379	-		GFF1436	0.43	-1.3
1,465,379	-		GFF1436	0.43	+1.0
1,465,379	-		GFF1436	0.43	+1.2
1,465,379	-		GFF1436	0.43	+1.2
1,465,379	-		GFF1436	0.43	-1.8
1,465,379	-		GFF1436	0.43	-0.1
1,465,379	-		GFF1436	0.43	-0.3
1,465,379	-		GFF1436	0.43	-2.0
1,465,384	-		GFF1436	0.44	-0.6
1,465,389	-		GFF1436	0.44	-0.8
1,465,389	-		GFF1436	0.44	-0.4
1,465,389	-		GFF1436	0.44	-0.9
1,465,404	-		GFF1436	0.46	-2.2
1,465,407	+		GFF1436	0.46	-0.6
1,465,464	-		GFF1436	0.53	+0.2
1,465,489	+		GFF1436	0.56	-0.3
1,465,489	+		GFF1436	0.56	+0.9
1,465,496	-		GFF1436	0.57	-0.5
1,465,496	-		GFF1436	0.57	-0.4
1,465,510	+		GFF1436	0.59	-0.5
1,465,513	-		GFF1436	0.59	+0.9
1,465,515	+		GFF1436	0.59	-1.8
1,465,518	+		GFF1436	0.60	-0.8
1,465,518	-		GFF1436	0.60	-1.6
1,465,518	-		GFF1436	0.60	-1.5
1,465,523	-		GFF1436	0.60	-0.3
1,465,558	+		GFF1436	0.64	+0.3
1,465,558	+		GFF1436	0.64	-0.4
1,465,565	+		GFF1436	0.65	-0.3
1,465,565	+		GFF1436	0.65	-0.3
1,465,567	+		GFF1436	0.65	-1.0
1,465,567	+		GFF1436	0.65	-0.5
1,465,573	-		GFF1436	0.66	-0.9
1,465,573	-		GFF1436	0.66	+0.8
1,465,575	-		GFF1436	0.66	-1.3
1,465,575	-		GFF1436	0.66	+0.3
1,465,575	-		GFF1436	0.66	-0.2
1,465,589	+		GFF1436	0.68	-0.1
1,465,613	+		GFF1436	0.71	-0.4
1,465,621	-		GFF1436	0.72	-0.1
1,465,631	+		GFF1436	0.73	+0.1
1,465,637	+		GFF1436	0.74	-0.2
1,465,637	+		GFF1436	0.74	-0.9
1,465,642	+		GFF1436	0.74	-0.5
1,465,642	+		GFF1436	0.74	-0.9
1,465,645	-		GFF1436	0.75	-2.2
1,465,650	-		GFF1436	0.75	+0.4
1,465,650	-		GFF1436	0.75	+0.5
1,465,652	+		GFF1436	0.76	-1.9
1,465,660	-		GFF1436	0.77	-0.3
1,465,690	+		GFF1436	0.80	-0.3
1,465,700	-		GFF1436	0.81	-0.5
1,465,701	+		GFF1436	0.81	-2.8
1,465,701	+		GFF1436	0.81	+1.6
1,465,702	+		GFF1436	0.82	-0.1
1,465,709	-		GFF1436	0.82	+0.4
1,465,710	-		GFF1436	0.83	-1.1
1,465,713	+		GFF1436	0.83	-1.7
1,465,713	+		GFF1436	0.83	-2.1
1,465,721	-		GFF1436	0.84	-0.4
1,465,721	-		GFF1436	0.84	-0.5
1,465,721	-		GFF1436	0.84	-1.5
1,465,769	+		GFF1436	0.90	-0.1
1,465,777	-				+0.7
1,465,839	+				-0.6
1,465,848	-				-0.5
1,465,881	+				+0.4
1,465,928	+		GFF1437	0.15	-0.3
1,465,928	+		GFF1437	0.15	+0.2
1,465,936	-		GFF1437	0.17	+0.5
1,465,936	-		GFF1437	0.17	-1.6
1,465,971	-		GFF1437	0.27	-1.0
1,465,982	+		GFF1437	0.29	-1.8
1,466,023	-		GFF1437	0.40	-0.3
1,466,023	-		GFF1437	0.40	-0.8
1,466,074	+		GFF1437	0.54	-0.1
1,466,102	+		GFF1437	0.61	-1.8
1,466,102	+		GFF1437	0.61	-0.5
1,466,110	-		GFF1437	0.63	+0.7
1,466,110	-		GFF1437	0.63	+0.8
1,466,110	-		GFF1437	0.63	-1.6
1,466,110	-		GFF1437	0.63	+0.3
1,466,134	-		GFF1437	0.69	-0.7
1,466,177	+		GFF1437	0.81	+1.0
1,466,177	+		GFF1437	0.81	-1.8
1,466,177	+		GFF1437	0.81	+1.5
1,466,177	+		GFF1437	0.81	+0.2
1,466,185	-		GFF1437	0.83	-0.5
1,466,185	-		GFF1437	0.83	+1.2
1,466,185	-		GFF1437	0.83	+0.8
1,466,185	-		GFF1437	0.83	+1.1
1,466,185	-		GFF1437	0.83	+0.5
1,466,185	-		GFF1437	0.83	+0.3
1,466,201	-		GFF1437	0.87	-0.2
1,466,235	+				-1.1
1,466,260	+				-0.6
1,466,266	-				-0.7
1,466,266	-				-1.3
1,466,268	+				-1.4
1,466,268	+				-0.6
1,466,268	+				-1.3
1,466,268	+				+0.3
1,466,268	-				-1.1
1,466,268	-				-0.6
1,466,276	-				-2.7
1,466,283	-				-1.3
1,466,291	-				-0.1
1,466,301	+				-1.1
1,466,329	+				-0.9
1,466,329	-				+0.3
1,466,331	+				-0.8
1,466,342	+				+1.1
1,466,350	-				-0.8
1,466,350	-				+0.0
1,466,350	-				+0.2
1,466,357	+				-1.1
1,466,357	+				-0.3
1,466,365	-				-0.1
1,466,377	+				-0.1
1,466,380	-				+0.2
1,466,392	+		GFF1438	0.10	-2.3
1,466,400	-		GFF1438	0.11	-2.8
1,466,418	-		GFF1438	0.13	+0.3
1,466,418	-		GFF1438	0.13	+1.2
1,466,420	+		GFF1438	0.13	-0.4
1,466,430	+		GFF1438	0.14	+0.3
1,466,431	+		GFF1438	0.14	-0.7
1,466,438	-		GFF1438	0.14	+0.3
1,466,442	+		GFF1438	0.15	+0.4
1,466,442	+		GFF1438	0.15	-0.3
1,466,450	-		GFF1438	0.16	+0.3
1,466,463	+		GFF1438	0.17	+0.4
1,466,515	-		GFF1438	0.21	+0.5
1,466,532	-		GFF1438	0.23	-0.5
1,466,575	-		GFF1438	0.27	+0.6
1,466,581	+		GFF1438	0.27	+0.2
1,466,582	+		GFF1438	0.27	-3.3
1,466,587	-		GFF1438	0.28	+0.1
1,466,607	+		GFF1438	0.30	+0.3
1,466,607	+		GFF1438	0.30	-0.8
1,466,613	-		GFF1438	0.30	-0.7
1,466,615	-		GFF1438	0.30	+1.2
1,466,654	+		GFF1438	0.34	+0.9
1,466,657	+		GFF1438	0.34	+0.0
1,466,664	+		GFF1438	0.35	+0.9
1,466,664	+		GFF1438	0.35	-0.1
1,466,665	-		GFF1438	0.35	-0.3
1,466,672	-		GFF1438	0.35	+0.3
1,466,696	+		GFF1438	0.38	-0.5
1,466,704	-		GFF1438	0.38	+0.2
1,466,704	-		GFF1438	0.38	+0.9
1,466,704	-		GFF1438	0.38	+0.1
1,466,709	+		GFF1438	0.39	-0.8
1,466,709	+		GFF1438	0.39	+0.2
1,466,709	+		GFF1438	0.39	-1.7
1,466,709	+		GFF1438	0.39	-1.1
1,466,728	+		GFF1438	0.41	-0.5
1,466,728	+		GFF1438	0.41	-0.4
1,466,736	-		GFF1438	0.41	-0.0
1,466,763	+		GFF1438	0.44	-2.5
1,466,763	+		GFF1438	0.44	-1.9
1,466,763	+		GFF1438	0.44	-0.8
1,466,763	+		GFF1438	0.44	+0.5
1,466,763	+		GFF1438	0.44	+0.0
1,466,771	-		GFF1438	0.44	-2.1
1,466,780	+		GFF1438	0.45	-1.3
1,466,784	-		GFF1438	0.46	-0.9
1,466,786	+		GFF1438	0.46	+0.7
1,466,786	+		GFF1438	0.46	-0.6
1,466,786	+		GFF1438	0.46	+0.2
1,466,794	-		GFF1438	0.46	-0.9
1,466,800	-		GFF1438	0.47	-0.3
1,466,814	+		GFF1438	0.48	+0.4
1,466,827	+		GFF1438	0.49	-1.3
1,466,832	+		GFF1438	0.50	-0.5
1,466,840	+		GFF1438	0.51	-0.4
1,466,842	-		GFF1438	0.51	+0.7
1,466,848	+		GFF1438	0.51	-1.3
1,466,848	-		GFF1438	0.51	+0.7
1,466,856	-		GFF1438	0.52	-1.9
1,466,856	-		GFF1438	0.52	+0.0
1,466,856	-		GFF1438	0.52	+1.6
1,466,858	-		GFF1438	0.52	-1.7
1,466,909	-		GFF1438	0.57	-0.3
1,466,925	+		GFF1438	0.58	+0.0
1,466,926	+		GFF1438	0.58	-1.3
1,466,926	+		GFF1438	0.58	+0.2
1,466,934	-		GFF1438	0.59	-0.4
1,466,936	+		GFF1438	0.59	-0.6
1,466,941	+		GFF1438	0.60	-1.2
1,466,941	+		GFF1438	0.60	-0.9
1,466,944	-		GFF1438	0.60	-0.5
1,466,960	+		GFF1438	0.61	-0.2
1,467,043	+		GFF1438	0.69	-0.5
1,467,043	+		GFF1438	0.69	-0.7
1,467,044	-		GFF1438	0.69	-0.8
1,467,044	-		GFF1438	0.69	+0.3
1,467,048	+		GFF1438	0.69	-0.3
1,467,048	+		GFF1438	0.69	+0.0
1,467,048	+		GFF1438	0.69	-0.4
1,467,048	+		GFF1438	0.69	+0.2
1,467,051	-		GFF1438	0.70	-1.6
1,467,056	-		GFF1438	0.70	-0.2
1,467,056	-		GFF1438	0.70	-1.1
1,467,056	-		GFF1438	0.70	+0.1
1,467,056	-		GFF1438	0.70	+0.7
1,467,056	-		GFF1438	0.70	+0.9
1,467,061	-		GFF1438	0.70	+0.9
1,467,070	+		GFF1438	0.71	+0.2
1,467,070	+		GFF1438	0.71	-0.3
1,467,070	+		GFF1438	0.71	+0.2
1,467,070	+		GFF1438	0.71	+0.2
1,467,070	+		GFF1438	0.71	-0.3
1,467,070	+		GFF1438	0.71	-1.8
1,467,078	-		GFF1438	0.72	+1.3
1,467,078	-		GFF1438	0.72	+0.0
1,467,078	-		GFF1438	0.72	+0.3
1,467,078	-		GFF1438	0.72	-1.1
1,467,085	-		GFF1438	0.73	-0.5
1,467,100	+		GFF1438	0.74	-1.3
1,467,108	-		GFF1438	0.75	-0.2
1,467,108	-		GFF1438	0.75	+0.2
1,467,119	+		GFF1438	0.76	-1.4
1,467,132	-		GFF1438	0.77	+1.3
1,467,142	-		GFF1438	0.78	-1.8
1,467,170	-		GFF1438	0.80	-1.1
1,467,179	-		GFF1438	0.81	+0.2
1,467,192	+		GFF1438	0.82	-1.1
1,467,199	+		GFF1438	0.83	-0.6
1,467,207	+		GFF1438	0.84	-0.6
1,467,209	-		GFF1438	0.84	-0.1
1,467,237	+		GFF1438	0.86	-0.5
1,467,241	+		GFF1438	0.87	-0.2
1,467,245	-		GFF1438	0.87	-0.3