Strain Fitness in Sphingobium sp. HT1-2 around GFF1430

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,458,682	-		GFF1428	0.75	-0.1
1,458,682	-		GFF1428	0.75	-1.5
1,458,682	-		GFF1428	0.75	+0.1
1,458,682	-		GFF1428	0.75	-0.7
1,458,682	-		GFF1428	0.75	-0.6
1,458,682	-		GFF1428	0.75	+0.3
1,458,687	-		GFF1428	0.75	-0.4
1,458,687	-		GFF1428	0.75	-2.2
1,458,687	-		GFF1428	0.75	+0.5
1,458,687	-		GFF1428	0.75	-0.9
1,458,687	-		GFF1428	0.75	-0.1
1,458,687	-		GFF1428	0.75	-0.5
1,458,687	-		GFF1428	0.75	-0.3
1,458,687	-		GFF1428	0.75	-1.7
1,458,687	-		GFF1428	0.75	-1.0
1,458,689	+		GFF1428	0.75	+1.0
1,458,689	+		GFF1428	0.75	+0.9
1,458,689	+		GFF1428	0.75	-2.1
1,458,689	+		GFF1428	0.75	-2.2
1,458,697	-		GFF1428	0.76	-1.9
1,458,697	-		GFF1428	0.76	+0.0
1,458,697	-		GFF1428	0.76	+0.7
1,458,704	-		GFF1428	0.76	+0.2
1,458,704	-		GFF1428	0.76	+0.1
1,458,718	+		GFF1428	0.77	-0.5
1,458,721	-		GFF1428	0.78	-0.1
1,458,728	+		GFF1428	0.78	-0.3
1,458,731	-		GFF1428	0.78	+0.5
1,458,736	-		GFF1428	0.79	-1.6
1,458,741	+		GFF1428	0.79	+0.7
1,458,749	-		GFF1428	0.80	-0.7
1,458,749	-		GFF1428	0.80	+0.1
1,458,749	-		GFF1428	0.80	+0.1
1,458,787	-		GFF1428	0.82	-1.0
1,458,792	+		GFF1428	0.83	-0.3
1,458,792	+		GFF1428	0.83	-3.0
1,458,792	+		GFF1428	0.83	+0.9
1,458,792	+		GFF1428	0.83	-1.0
1,458,792	+		GFF1428	0.83	+0.4
1,458,792	+		GFF1428	0.83	+0.4
1,458,792	+		GFF1428	0.83	-0.3
1,458,792	+		GFF1428	0.83	-2.1
1,458,792	+		GFF1428	0.83	-0.6
1,458,792	+		GFF1428	0.83	-1.3
1,458,792	+		GFF1428	0.83	+0.5
1,458,792	+		GFF1428	0.83	-1.0
1,458,792	+		GFF1428	0.83	-0.2
1,458,792	+		GFF1428	0.83	+0.7
1,458,792	+		GFF1428	0.83	+0.0
1,458,792	+		GFF1428	0.83	-0.2
1,458,792	+		GFF1428	0.83	+0.5
1,458,798	-		GFF1428	0.83	-0.8
1,458,800	-		GFF1428	0.83	-0.2
1,458,800	-		GFF1428	0.83	-1.5
1,458,800	-		GFF1428	0.83	+0.0
1,458,800	-		GFF1428	0.83	-1.1
1,458,800	-		GFF1428	0.83	+0.4
1,458,800	-		GFF1428	0.83	-1.2
1,458,800	-		GFF1428	0.83	-0.7
1,458,800	-		GFF1428	0.83	-1.1
1,458,800	-		GFF1428	0.83	-0.6
1,458,800	-		GFF1428	0.83	-1.6
1,458,800	-		GFF1428	0.83	-0.3
1,458,800	-		GFF1428	0.83	+0.9
1,458,800	-		GFF1428	0.83	-1.3
1,458,817	+		GFF1428	0.84	-0.4
1,458,819	+		GFF1428	0.85	-0.9
1,458,827	-		GFF1428	0.85	-1.1
1,458,827	-		GFF1428	0.85	+1.4
1,458,848	-		GFF1428	0.87	+0.9
1,458,874	+		GFF1428	0.88	+0.3
1,458,916	+				+0.0
1,458,981	-				+0.6
1,459,030	+				+1.1
1,459,036	+				-0.7
1,459,071	+				-0.3
1,459,099	+				-1.1
1,459,102	-				-1.4
1,459,123	+				+0.4
1,459,133	-		GFF1429	0.11	-1.3
1,459,133	-		GFF1429	0.11	+0.4
1,459,146	+		GFF1429	0.13	-0.1
1,459,172	-		GFF1429	0.17	-0.1
1,459,173	-		GFF1429	0.18	-0.6
1,459,187	+		GFF1429	0.20	-0.5
1,459,250	+		GFF1429	0.30	+0.2
1,459,255	+		GFF1429	0.31	+0.4
1,459,255	+		GFF1429	0.31	-1.4
1,459,255	+		GFF1429	0.31	+0.9
1,459,255	+		GFF1429	0.31	-1.1
1,459,255	+		GFF1429	0.31	-0.9
1,459,255	+		GFF1429	0.31	-0.1
1,459,255	+		GFF1429	0.31	-0.1
1,459,255	+		GFF1429	0.31	+1.3
1,459,255	+		GFF1429	0.31	+1.1
1,459,263	-		GFF1429	0.33	-0.6
1,459,263	-		GFF1429	0.33	-0.6
1,459,275	+		GFF1429	0.35	-0.5
1,459,278	-		GFF1429	0.35	+0.1
1,459,294	-		GFF1429	0.38	+0.0
1,459,294	-		GFF1429	0.38	+0.6
1,459,309	+		GFF1429	0.40	-0.1
1,459,317	-		GFF1429	0.42	+1.5
1,459,317	-		GFF1429	0.42	-2.6
1,459,336	-		GFF1429	0.45	-0.5
1,459,339	+		GFF1429	0.45	-0.3
1,459,347	-		GFF1429	0.47	+0.8
1,459,348	+		GFF1429	0.47	+0.0
1,459,348	+		GFF1429	0.47	-1.7
1,459,348	+		GFF1429	0.47	+0.9
1,459,351	-		GFF1429	0.47	+0.1
1,459,356	-		GFF1429	0.48	-2.0
1,459,385	+		GFF1429	0.53	-0.2
1,459,387	-		GFF1429	0.53	-3.0
1,459,398	+		GFF1429	0.55	+0.0
1,459,399	+		GFF1429	0.55	+0.4
1,459,406	-		GFF1429	0.57	-1.0
1,459,407	-		GFF1429	0.57	-1.0
1,459,407	-		GFF1429	0.57	-0.8
1,459,421	-		GFF1429	0.59	+1.2
1,459,423	+		GFF1429	0.59	-0.3
1,459,431	-		GFF1429	0.61	-0.4
1,459,464	-		GFF1429	0.66	+0.1
1,459,475	+		GFF1429	0.68	-0.4
1,459,486	-		GFF1429	0.70	-0.8
1,459,506	+		GFF1429	0.73	-0.5
1,459,506	+		GFF1429	0.73	+0.6
1,459,527	+		GFF1429	0.77	+0.5
1,459,535	-		GFF1429	0.78	-0.7
1,459,535	-		GFF1429	0.78	-0.1
1,459,566	+		GFF1429	0.83	+1.1
1,459,566	+		GFF1429	0.83	-1.6
1,459,574	-		GFF1429	0.85	-2.4
1,459,580	-		GFF1429	0.86	+0.2
1,459,580	-		GFF1429	0.86	-0.8
1,459,582	+		GFF1429	0.86	-0.3
1,459,585	-		GFF1429	0.87	+1.2
1,459,633	-				+0.9
1,459,640	-				+0.4
1,459,653	+				+0.0
1,459,659	+				-0.1
1,459,662	-				-0.1
1,459,673	+				-1.4
1,459,697	+				+1.5
1,459,698	+				-0.3
1,459,746	+				+0.0
1,459,746	+				+1.7
1,459,746	+				+0.1
1,459,746	+				-0.4
1,459,746	+				+0.8
1,459,746	+				-0.2
1,459,746	+				+1.1
1,459,746	+				+0.6
1,459,746	+				-0.9
1,459,746	+				+0.7
1,459,746	+				-1.2
1,459,746	+				+0.0
1,459,746	+				-1.1
1,459,746	+				-0.0
1,459,746	+				-2.0
1,459,746	+				-0.0
1,459,746	+				-0.1
1,459,746	+				-0.7
1,459,746	+				-2.4
1,459,749	-				-1.2
1,459,754	-		GFF1430	0.10	-0.6
1,459,754	-		GFF1430	0.10	-0.7
1,459,754	-		GFF1430	0.10	-0.5
1,459,754	-		GFF1430	0.10	-0.2
1,459,754	-		GFF1430	0.10	+1.0
1,459,754	-		GFF1430	0.10	+1.3
1,459,754	-		GFF1430	0.10	-1.2
1,459,754	-		GFF1430	0.10	-0.5
1,459,754	-		GFF1430	0.10	-0.3
1,459,754	-		GFF1430	0.10	-0.6
1,459,754	-		GFF1430	0.10	+0.3
1,459,754	-		GFF1430	0.10	-1.4
1,459,754	-		GFF1430	0.10	-1.1
1,459,757	+		GFF1430	0.11	-0.0
1,459,807	-		GFF1430	0.18	-0.2
1,459,807	-		GFF1430	0.18	+0.8
1,459,812	-		GFF1430	0.18	-1.9
1,459,815	-		GFF1430	0.19	-2.4
1,459,842	-		GFF1430	0.23	-0.8
1,459,842	-		GFF1430	0.23	-0.1
1,459,854	+		GFF1430	0.24	-0.4
1,459,864	-		GFF1430	0.26	+0.3
1,459,908	-		GFF1430	0.32	-1.5
1,459,912	-		GFF1430	0.32	-0.7
1,459,912	-		GFF1430	0.32	+1.2
1,459,927	+		GFF1430	0.34	-1.6
1,459,935	-		GFF1430	0.35	-0.2
1,459,955	+		GFF1430	0.38	+1.0
1,459,955	+		GFF1430	0.38	-2.3
1,460,001	+		GFF1430	0.45	+0.3
1,460,009	-		GFF1430	0.46	-0.1
1,460,009	-		GFF1430	0.46	-0.5
1,460,020	+		GFF1430	0.47	-0.4
1,460,028	+		GFF1430	0.48	+1.6
1,460,032	-		GFF1430	0.49	-1.1
1,460,038	-		GFF1430	0.50	+0.2
1,460,038	-		GFF1430	0.50	-0.2
1,460,042	+		GFF1430	0.50	-1.3
1,460,057	+		GFF1430	0.52	-1.4
1,460,057	+		GFF1430	0.52	-0.3
1,460,057	+		GFF1430	0.52	-1.1
1,460,057	+		GFF1430	0.52	+0.4
1,460,057	+		GFF1430	0.52	-1.6
1,460,057	+		GFF1430	0.52	+0.6
1,460,057	+		GFF1430	0.52	+0.5
1,460,057	+		GFF1430	0.52	-0.4
1,460,057	+		GFF1430	0.52	+0.2
1,460,057	+		GFF1430	0.52	-0.1
1,460,065	-		GFF1430	0.53	-1.0
1,460,065	-		GFF1430	0.53	-0.3
1,460,065	-		GFF1430	0.53	-1.5
1,460,065	-		GFF1430	0.53	-0.3
1,460,065	-		GFF1430	0.53	-0.3
1,460,065	-		GFF1430	0.53	+0.1
1,460,065	-		GFF1430	0.53	-0.8
1,460,065	-		GFF1430	0.53	+2.2
1,460,066	+		GFF1430	0.54	-1.9
1,460,066	+		GFF1430	0.54	-1.3
1,460,074	-		GFF1430	0.55	-1.0
1,460,084	-		GFF1430	0.56	-0.3
1,460,115	+		GFF1430	0.60	-2.4
1,460,141	-		GFF1430	0.64	-1.1
1,460,149	+		GFF1430	0.65	-1.4
1,460,157	-		GFF1430	0.66	+0.6
1,460,157	-		GFF1430	0.66	+1.0
1,460,159	+		GFF1430	0.67	+0.9
1,460,159	+		GFF1430	0.67	-1.4
1,460,159	+		GFF1430	0.67	-0.0
1,460,159	+		GFF1430	0.67	+0.9
1,460,160	+		GFF1430	0.67	+0.6
1,460,167	-		GFF1430	0.68	-0.1
1,460,167	-		GFF1430	0.68	-0.1
1,460,167	-		GFF1430	0.68	-0.1
1,460,167	-		GFF1430	0.68	-0.2
1,460,209	+		GFF1430	0.73	+0.1
1,460,209	+		GFF1430	0.73	+1.3
1,460,209	+		GFF1430	0.73	+0.0
1,460,209	+		GFF1430	0.73	+0.4
1,460,209	+		GFF1430	0.73	-0.3
1,460,209	+		GFF1430	0.73	+0.5
1,460,209	+		GFF1430	0.73	-1.3
1,460,212	-		GFF1430	0.74	-0.4
1,460,212	-		GFF1430	0.74	-0.6
1,460,214	+		GFF1430	0.74	-0.5
1,460,214	+		GFF1430	0.74	-0.3
1,460,217	-		GFF1430	0.75	+0.4
1,460,217	-		GFF1430	0.75	-0.5
1,460,217	-		GFF1430	0.75	-2.4
1,460,217	-		GFF1430	0.75	+1.1
1,460,217	-		GFF1430	0.75	-1.6
1,460,217	-		GFF1430	0.75	+0.7
1,460,222	-		GFF1430	0.75	-1.3
1,460,227	-		GFF1430	0.76	+0.8
1,460,257	-		GFF1430	0.80	+0.2
1,460,289	+		GFF1430	0.85	-0.4
1,460,303	+		GFF1430	0.87	-1.4
1,460,305	-		GFF1430	0.87	+0.9
1,460,313	+		GFF1430	0.88	+0.5
1,460,313	+		GFF1430	0.88	+0.0
1,460,316	-		GFF1430	0.88	-0.5
1,460,330	-				+0.3
1,460,348	+				-0.3
1,460,348	+				-0.8
1,460,351	-				-1.3
1,460,356	-				-1.5
1,460,394	+				-0.7
1,460,403	+				+0.2
1,460,421	-				+0.5
1,460,434	+				-0.2
1,460,476	-				-1.4
1,460,477	+				-1.8
1,460,487	+				+0.2
1,460,516	+				+0.2
1,460,584	-				-2.2
1,460,600	+				-0.3
1,460,628	+				+1.5
1,460,630	+				+0.7
1,460,630	+				-0.4
1,460,630	+				-0.1
1,460,635	+				-0.4
1,460,638	-				-0.1
1,460,638	-				-0.2
1,460,638	-				-0.4
1,460,674	-				-0.0
1,460,674	-				+0.3
1,460,680	+				-1.6
1,460,705	+		GFF1431	0.11	-0.3
1,460,728	-		GFF1431	0.13	-0.1
1,460,729	+		GFF1431	0.13	+1.1
1,460,756	+		GFF1431	0.16	+0.4
1,460,759	-		GFF1431	0.16	+0.3
1,460,763	-		GFF1431	0.17	+0.9
1,460,764	-		GFF1431	0.17	-0.8
1,460,764	-		GFF1431	0.17	+1.2
1,460,764	-		GFF1431	0.17	+0.2
1,460,764	-		GFF1431	0.17	+0.3
1,460,765	+		GFF1431	0.17	+0.8
1,460,766	+		GFF1431	0.17	+0.2
1,460,771	+		GFF1431	0.18	+0.4
1,460,771	+		GFF1431	0.18	-1.1
1,460,773	-		GFF1431	0.18	-2.1
1,460,773	-		GFF1431	0.18	-0.9
1,460,779	-		GFF1431	0.18	+0.1
1,460,779	-		GFF1431	0.18	-0.4
1,460,780	-		GFF1431	0.18	-1.8
1,460,802	+		GFF1431	0.21	+1.2
1,460,802	+		GFF1431	0.21	+1.0
1,460,802	+		GFF1431	0.21	-0.4
1,460,802	+		GFF1431	0.21	+0.0
1,460,802	+		GFF1431	0.21	-1.0
1,460,802	+		GFF1431	0.21	-1.0
1,460,802	+		GFF1431	0.21	-0.9
1,460,802	+		GFF1431	0.21	-1.1
1,460,810	-		GFF1431	0.21	+0.0
1,460,810	-		GFF1431	0.21	-0.0
1,460,810	-		GFF1431	0.21	+0.5
1,460,825	-		GFF1431	0.23	-1.4
1,460,831	-		GFF1431	0.23	-2.1
1,460,841	+		GFF1431	0.24	+0.2
1,460,841	+		GFF1431	0.24	-1.0
1,460,841	+		GFF1431	0.24	-0.2
1,460,841	+		GFF1431	0.24	-0.3
1,460,841	+		GFF1431	0.24	+0.2
1,460,841	+		GFF1431	0.24	-1.2
1,460,846	+		GFF1431	0.25	+0.3
1,460,847	+		GFF1431	0.25	-1.1
1,460,847	+		GFF1431	0.25	-0.6
1,460,849	-		GFF1431	0.25	+0.5
1,460,849	-		GFF1431	0.25	+1.5
1,460,849	-		GFF1431	0.25	-1.3
1,460,849	-		GFF1431	0.25	-0.2
1,460,849	-		GFF1431	0.25	+0.3
1,460,849	-		GFF1431	0.25	-0.6
1,460,860	-		GFF1431	0.26	+0.9
1,460,864	+		GFF1431	0.27	-0.6
1,460,872	-		GFF1431	0.27	-0.8
1,460,876	-		GFF1431	0.28	-0.1
1,460,877	+		GFF1431	0.28	-1.0
1,460,892	-		GFF1431	0.29	-0.1
1,460,903	+		GFF1431	0.30	+0.6
1,460,909	+		GFF1431	0.31	-0.5
1,460,909	+		GFF1431	0.31	+0.4
1,460,910	+		GFF1431	0.31	+1.0
1,460,910	+		GFF1431	0.31	-0.3
1,460,910	+		GFF1431	0.31	-0.5
1,460,910	+		GFF1431	0.31	+0.7
1,460,918	-		GFF1431	0.32	-0.5
1,460,918	-		GFF1431	0.32	+1.9
1,460,920	+		GFF1431	0.32	-0.3
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