Strain Fitness in Sphingobium sp. HT1-2 around GFF1395

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,421,616	+		GFF1394	0.53	+0.5
1,421,616	+		GFF1394	0.53	+0.1
1,421,616	+		GFF1394	0.53	+1.0
1,421,616	+		GFF1394	0.53	-0.2
1,421,616	+		GFF1394	0.53	-0.9
1,421,616	+		GFF1394	0.53	-2.5
1,421,616	+		GFF1394	0.53	-1.3
1,421,624	-		GFF1394	0.53	+0.2
1,421,624	-		GFF1394	0.53	+0.3
1,421,624	-		GFF1394	0.53	-1.4
1,421,648	-		GFF1394	0.54	+0.5
1,421,677	-		GFF1394	0.56	-0.8
1,421,679	+		GFF1394	0.56	-0.2
1,421,687	-		GFF1394	0.56	-0.1
1,421,702	+		GFF1394	0.57	-0.4
1,421,708	+		GFF1394	0.57	-0.1
1,421,709	+		GFF1394	0.57	-0.6
1,421,723	+		GFF1394	0.58	-0.8
1,421,723	+		GFF1394	0.58	-0.9
1,421,746	-		GFF1394	0.59	+0.6
1,421,757	+		GFF1394	0.59	-0.4
1,421,763	-		GFF1394	0.60	-0.6
1,421,778	+		GFF1394	0.60	-0.5
1,421,797	+		GFF1394	0.61	-0.3
1,421,807	+		GFF1394	0.62	-0.8
1,421,815	-		GFF1394	0.62	-0.4
1,421,843	+		GFF1394	0.64	-0.6
1,421,860	+		GFF1394	0.64	-3.0
1,421,861	+		GFF1394	0.64	-0.6
1,421,861	+		GFF1394	0.64	+1.7
1,421,865	+		GFF1394	0.65	-0.8
1,421,921	+		GFF1394	0.67	+0.9
1,421,951	+		GFF1394	0.69	-1.1
1,421,969	-		GFF1394	0.70	+0.2
1,421,969	-		GFF1394	0.70	-2.4
1,421,969	-		GFF1394	0.70	-0.6
1,421,981	+		GFF1394	0.70	-0.8
1,421,999	+		GFF1394	0.71	+0.2
1,422,022	+		GFF1394	0.72	-1.8
1,422,024	-		GFF1394	0.72	-0.5
1,422,032	+		GFF1394	0.73	-1.4
1,422,032	+		GFF1394	0.73	-0.7
1,422,033	+		GFF1394	0.73	-1.0
1,422,033	+		GFF1394	0.73	+1.7
1,422,046	-		GFF1394	0.73	+0.5
1,422,052	+		GFF1394	0.74	-1.4
1,422,060	+		GFF1394	0.74	+0.2
1,422,066	+		GFF1394	0.74	+1.4
1,422,067	+		GFF1394	0.74	-0.5
1,422,078	+		GFF1394	0.75	+0.6
1,422,090	+		GFF1394	0.75	-2.4
1,422,103	+		GFF1394	0.76	-0.6
1,422,112	+		GFF1394	0.76	-1.3
1,422,120	-		GFF1394	0.77	-1.3
1,422,131	+		GFF1394	0.77	+0.2
1,422,148	+		GFF1394	0.78	+1.3
1,422,148	+		GFF1394	0.78	-0.5
1,422,148	+		GFF1394	0.78	-1.0
1,422,156	-		GFF1394	0.79	-0.2
1,422,241	+		GFF1394	0.83	-0.5
1,422,280	+		GFF1394	0.85	+0.1
1,422,295	-		GFF1394	0.85	+1.1
1,422,298	-		GFF1394	0.85	-1.1
1,422,331	+		GFF1394	0.87	+0.1
1,422,332	-		GFF1394	0.87	-0.1
1,422,347	-		GFF1394	0.88	+0.4
1,422,375	+		GFF1394	0.89	+0.1
1,422,405	-				-0.3
1,422,421	-				-0.6
1,422,426	+				-0.3
1,422,427	+				-0.8
1,422,427	-				-1.5
1,422,434	-				+0.2
1,422,436	+				-1.9
1,422,461	+				-0.0
1,422,461	+				-0.3
1,422,461	+				-1.5
1,422,461	+				-0.4
1,422,466	+				+0.5
1,422,469	-				-0.2
1,422,469	-				-1.6
1,422,469	-				-0.2
1,422,469	-				-0.9
1,422,476	+				-0.1
1,422,482	-				-0.3
1,422,488	-				+0.3
1,422,491	-				-0.7
1,422,503	+				-0.7
1,422,529	+				-1.4
1,422,529	+				-0.5
1,422,537	-				-1.9
1,422,542	-				+0.2
1,422,549	-				+0.0
1,422,549	-				+0.5
1,422,549	-				+0.1
1,422,575	+				+0.2
1,422,575	+				+0.4
1,422,575	+				+0.2
1,422,575	+				-1.1
1,422,575	+				-0.6
1,422,575	+				-0.6
1,422,575	+				-1.3
1,422,575	+				-0.0
1,422,575	+				+0.2
1,422,575	+				+0.5
1,422,575	+				-0.9
1,422,582	+				-1.6
1,422,582	+				+0.5
1,422,583	-				+0.7
1,422,583	-				+0.4
1,422,583	-				+0.1
1,422,583	-				-0.3
1,422,583	-				-0.2
1,422,583	-				-0.7
1,422,583	-				-0.1
1,422,583	-				-0.0
1,422,583	-				+0.4
1,422,583	-				-0.5
1,422,583	-				-0.4
1,422,584	+				-0.5
1,422,584	+				+1.5
1,422,584	+				-2.1
1,422,584	+				-0.8
1,422,584	+				+0.7
1,422,592	-				-0.7
1,422,592	-				-0.5
1,422,592	-				-0.8
1,422,649	+				-0.1
1,422,649	+				+0.2
1,422,676	+				-2.1
1,422,695	-				+0.7
1,422,701	-				-0.4
1,422,716	+		GFF1395	0.10	-0.3
1,422,724	-		GFF1395	0.11	-0.5
1,422,724	-		GFF1395	0.11	-2.5
1,422,729	-		GFF1395	0.11	-1.3
1,422,743	+		GFF1395	0.13	-0.1
1,422,771	+		GFF1395	0.15	-0.9
1,422,771	+		GFF1395	0.15	-1.2
1,422,771	+		GFF1395	0.15	-0.1
1,422,779	-		GFF1395	0.16	-1.1
1,422,779	-		GFF1395	0.16	+1.1
1,422,811	+		GFF1395	0.18	-2.1
1,422,816	+		GFF1395	0.19	-0.1
1,422,824	-		GFF1395	0.20	-0.7
1,422,838	+		GFF1395	0.21	-0.8
1,422,844	-		GFF1395	0.21	-2.5
1,422,846	-		GFF1395	0.21	-0.9
1,422,858	+		GFF1395	0.23	+0.6
1,422,864	+		GFF1395	0.23	+0.5
1,422,901	+		GFF1395	0.26	+0.1
1,422,906	+		GFF1395	0.27	-0.5
1,422,911	+		GFF1395	0.27	-0.1
1,422,914	-		GFF1395	0.27	+0.7
1,422,919	+		GFF1395	0.28	-1.1
1,422,951	+		GFF1395	0.31	-1.6
1,422,953	+		GFF1395	0.31	-2.3
1,422,961	-		GFF1395	0.32	-0.4
1,422,961	-		GFF1395	0.32	-0.1
1,422,998	-		GFF1395	0.35	-1.8
1,423,037	+		GFF1395	0.38	+0.2
1,423,082	+		GFF1395	0.42	-0.7
1,423,085	-		GFF1395	0.42	+1.2
1,423,090	-		GFF1395	0.43	-1.5
1,423,090	-		GFF1395	0.43	-0.1
1,423,094	+		GFF1395	0.43	-1.1
1,423,110	-		GFF1395	0.44	-0.8
1,423,126	+		GFF1395	0.46	+0.7
1,423,159	+		GFF1395	0.49	-0.8
1,423,160	-		GFF1395	0.49	-1.4
1,423,167	-		GFF1395	0.49	+0.5
1,423,167	-		GFF1395	0.49	-0.8
1,423,194	-		GFF1395	0.52	-0.7
1,423,242	+		GFF1395	0.56	+0.2
1,423,254	+		GFF1395	0.57	-0.2
1,423,267	-		GFF1395	0.58	-0.6
1,423,282	-		GFF1395	0.59	-0.1
1,423,287	-		GFF1395	0.60	-0.3
1,423,296	-		GFF1395	0.61	-1.0
1,423,298	+		GFF1395	0.61	-0.6
1,423,306	-		GFF1395	0.62	-0.1
1,423,306	-		GFF1395	0.62	-0.6
1,423,324	+		GFF1395	0.63	+1.0
1,423,352	+		GFF1395	0.66	+0.6
1,423,353	-		GFF1395	0.66	-1.2
1,423,357	+		GFF1395	0.66	-0.4
1,423,357	+		GFF1395	0.66	-0.9
1,423,357	+		GFF1395	0.66	+0.6
1,423,357	+		GFF1395	0.66	-0.3
1,423,365	+		GFF1395	0.67	-0.2
1,423,365	-		GFF1395	0.67	-1.7
1,423,365	-		GFF1395	0.67	-0.0
1,423,365	-		GFF1395	0.67	-0.4
1,423,373	-		GFF1395	0.67	+0.8
1,423,373	-		GFF1395	0.67	-1.8
1,423,374	+		GFF1395	0.67	+0.2
1,423,392	-		GFF1395	0.69	+0.1
1,423,399	+		GFF1395	0.70	-0.7
1,423,399	+		GFF1395	0.70	+1.5
1,423,399	+		GFF1395	0.70	-1.2
1,423,399	+		GFF1395	0.70	+0.6
1,423,399	+		GFF1395	0.70	+0.1
1,423,399	+		GFF1395	0.70	+1.1
1,423,399	+		GFF1395	0.70	+0.6
1,423,399	+		GFF1395	0.70	+0.2
1,423,399	+		GFF1395	0.70	-0.4
1,423,399	+		GFF1395	0.70	-0.7
1,423,400	+		GFF1395	0.70	-1.5
1,423,402	-		GFF1395	0.70	-1.1
1,423,406	+		GFF1395	0.70	+1.3
1,423,407	-		GFF1395	0.70	-0.3
1,423,407	-		GFF1395	0.70	-1.5
1,423,407	-		GFF1395	0.70	+0.4
1,423,407	-		GFF1395	0.70	+0.4
1,423,407	-		GFF1395	0.70	+0.2
1,423,407	-		GFF1395	0.70	-0.6
1,423,407	-		GFF1395	0.70	-1.6
1,423,407	-		GFF1395	0.70	-0.2
1,423,407	-		GFF1395	0.70	-1.1
1,423,407	-		GFF1395	0.70	-0.7
1,423,407	-		GFF1395	0.70	-0.0
1,423,407	-		GFF1395	0.70	+0.2
1,423,407	-		GFF1395	0.70	+0.7
1,423,407	-		GFF1395	0.70	-0.4
1,423,407	-		GFF1395	0.70	-0.7
1,423,407	-		GFF1395	0.70	-1.8
1,423,407	-		GFF1395	0.70	-0.5
1,423,407	-		GFF1395	0.70	-0.2
1,423,407	-		GFF1395	0.70	-1.3
1,423,407	-		GFF1395	0.70	+1.4
1,423,411	+		GFF1395	0.71	+0.4
1,423,430	+		GFF1395	0.72	-0.4
1,423,430	+		GFF1395	0.72	-1.6
1,423,430	+		GFF1395	0.72	-0.3
1,423,430	+		GFF1395	0.72	-0.3
1,423,430	+		GFF1395	0.72	-0.3
1,423,438	-		GFF1395	0.73	+1.0
1,423,438	-		GFF1395	0.73	-0.3
1,423,438	-		GFF1395	0.73	-0.4
1,423,438	-		GFF1395	0.73	-1.4
1,423,438	-		GFF1395	0.73	-0.4
1,423,438	-		GFF1395	0.73	-1.3
1,423,438	-		GFF1395	0.73	+0.2
1,423,438	-		GFF1395	0.73	-1.7
1,423,438	-		GFF1395	0.73	-0.8
1,423,447	+		GFF1395	0.74	+0.2
1,423,447	+		GFF1395	0.74	-0.6
1,423,447	+		GFF1395	0.74	-1.0
1,423,447	+		GFF1395	0.74	-0.0
1,423,447	+		GFF1395	0.74	+0.6
1,423,447	+		GFF1395	0.74	-1.0
1,423,447	+		GFF1395	0.74	-0.7
1,423,448	+		GFF1395	0.74	-0.0
1,423,455	-		GFF1395	0.74	-0.0
1,423,455	-		GFF1395	0.74	-0.5
1,423,455	-		GFF1395	0.74	+0.0
1,423,455	-		GFF1395	0.74	+0.4
1,423,489	+		GFF1395	0.77	+1.1
1,423,499	-		GFF1395	0.78	-0.4
1,423,501	+		GFF1395	0.79	+0.1
1,423,510	+		GFF1395	0.79	+0.8
1,423,525	+		GFF1395	0.81	-0.4
1,423,525	+		GFF1395	0.81	-0.1
1,423,525	+		GFF1395	0.81	+0.2
1,423,525	+		GFF1395	0.81	+1.3
1,423,533	-		GFF1395	0.81	-0.3
1,423,551	-		GFF1395	0.83	-0.1
1,423,568	+		GFF1395	0.84	+0.9
1,423,575	-		GFF1395	0.85	+0.3
1,423,583	+		GFF1395	0.86	+0.2
1,423,592	-		GFF1395	0.86	-0.8
1,423,599	+		GFF1395	0.87	-1.1
1,423,607	-		GFF1395	0.88	-0.6
1,423,611	+		GFF1395	0.88	-0.6
1,423,624	+		GFF1395	0.89	-0.4
1,423,624	+		GFF1395	0.89	-0.6
1,423,627	-		GFF1395	0.89	-0.4
1,423,632	-		GFF1395	0.90	-2.1
1,423,632	-		GFF1395	0.90	-0.3
1,423,632	-		GFF1395	0.90	+0.6
1,423,645	-				-0.6
1,423,662	+				+0.4
1,423,672	+				+0.4
1,423,677	+				-0.1
1,423,679	+				+0.0
1,423,684	+				+0.7
1,423,685	-				-0.9
1,423,692	-				-2.1
1,423,718	-				-1.2
1,423,741	+				-0.5
1,423,741	+				+1.4
1,423,741	+				-2.0
1,423,741	+				-3.0
1,423,749	-				-0.3
1,423,749	-				-0.8
1,423,749	-				-0.7
1,423,749	-				-2.5
1,423,754	-				+1.4
1,423,754	-				+0.6
1,423,769	-				+0.4
1,423,774	-				+0.5
1,423,791	+				+0.3
1,423,791	+				-2.3
1,423,799	-		GFF1396	0.12	-0.3
1,423,799	-		GFF1396	0.12	-1.1
1,423,822	+		GFF1396	0.17	+0.2
1,423,825	+		GFF1396	0.18	+0.0
1,423,838	-		GFF1396	0.21	+0.6
1,423,863	+		GFF1396	0.27	+1.1
1,423,863	+		GFF1396	0.27	-1.1
1,423,904	-		GFF1396	0.37	-0.0
1,423,930	+		GFF1396	0.43	+1.1
1,423,935	+		GFF1396	0.44	-0.9
1,423,935	+		GFF1396	0.44	-0.6
1,423,935	+		GFF1396	0.44	-0.3
1,423,941	+		GFF1396	0.46	-0.7
1,423,942	+		GFF1396	0.46	+0.7
1,423,942	+		GFF1396	0.46	+0.0
1,423,942	+		GFF1396	0.46	+0.3
1,423,943	-		GFF1396	0.46	-0.6
1,423,943	-		GFF1396	0.46	-0.3
1,423,943	-		GFF1396	0.46	-2.6
1,423,943	-		GFF1396	0.46	-1.8
1,423,949	-		GFF1396	0.48	-0.2
1,423,950	-		GFF1396	0.48	-2.1
1,423,950	-		GFF1396	0.48	-2.1
1,423,950	-		GFF1396	0.48	-0.1
1,423,957	+		GFF1396	0.50	-0.4
1,423,972	-		GFF1396	0.53	+0.3
1,423,978	-		GFF1396	0.55	-0.5
1,423,980	-		GFF1396	0.55	-1.5
1,423,991	+		GFF1396	0.58	+0.7
1,423,993	+		GFF1396	0.58	+0.7
1,423,999	+		GFF1396	0.60	-0.5
1,423,999	-		GFF1396	0.60	+0.9
1,424,001	+		GFF1396	0.60	+0.9
1,424,001	+		GFF1396	0.60	-0.7
1,424,001	+		GFF1396	0.60	+0.1
1,424,001	+		GFF1396	0.60	+0.4
1,424,001	+		GFF1396	0.60	-0.3
1,424,001	+		GFF1396	0.60	-0.4
1,424,001	+		GFF1396	0.60	-0.4
1,424,001	+		GFF1396	0.60	+0.5
1,424,001	+		GFF1396	0.60	+0.5
1,424,001	+		GFF1396	0.60	-0.2
1,424,001	+		GFF1396	0.60	+1.7
1,424,007	-		GFF1396	0.62	-0.8
1,424,007	-		GFF1396	0.62	-0.5
1,424,007	-		GFF1396	0.62	-0.9
1,424,009	+		GFF1396	0.62	-0.1
1,424,009	+		GFF1396	0.62	+0.4
1,424,009	+		GFF1396	0.62	+0.2
1,424,009	+		GFF1396	0.62	-1.5
1,424,009	+		GFF1396	0.62	-0.6
1,424,009	-		GFF1396	0.62	-0.8
1,424,009	-		GFF1396	0.62	-0.2
1,424,009	-		GFF1396	0.62	-0.5
1,424,009	-		GFF1396	0.62	-1.5
1,424,009	-		GFF1396	0.62	-0.2
1,424,009	-		GFF1396	0.62	-1.1
1,424,009	-		GFF1396	0.62	-0.3
1,424,017	-		GFF1396	0.64	+0.7
1,424,017	-		GFF1396	0.64	-1.7
1,424,017	-		GFF1396	0.64	+0.6
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