Strain Fitness in Sphingobium sp. HT1-2 around GFF1393

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,417,455	+		GFF1392	0.36	-2.0
1,417,455	+		GFF1392	0.36	+1.8
1,417,455	-		GFF1392	0.36	+0.3
1,417,463	-		GFF1392	0.36	-0.4
1,417,463	-		GFF1392	0.36	+0.3
1,417,463	-		GFF1392	0.36	-1.1
1,417,463	-		GFF1392	0.36	-0.6
1,417,466	+		GFF1392	0.36	-0.4
1,417,466	+		GFF1392	0.36	-0.6
1,417,476	-		GFF1392	0.37	-0.1
1,417,484	-		GFF1392	0.37	+1.2
1,417,518	-		GFF1392	0.40	-1.8
1,417,521	+		GFF1392	0.40	-0.7
1,417,521	+		GFF1392	0.40	-0.9
1,417,523	+		GFF1392	0.40	-2.7
1,417,523	+		GFF1392	0.40	-2.7
1,417,523	+		GFF1392	0.40	-0.3
1,417,523	+		GFF1392	0.40	-1.1
1,417,523	+		GFF1392	0.40	+0.2
1,417,523	+		GFF1392	0.40	+1.8
1,417,523	+		GFF1392	0.40	-0.2
1,417,523	+		GFF1392	0.40	-1.7
1,417,528	+		GFF1392	0.40	-0.2
1,417,531	-		GFF1392	0.40	+0.7
1,417,531	-		GFF1392	0.40	-1.5
1,417,531	-		GFF1392	0.40	+1.3
1,417,531	-		GFF1392	0.40	+0.6
1,417,536	-		GFF1392	0.41	-0.1
1,417,536	-		GFF1392	0.41	+0.6
1,417,557	-		GFF1392	0.42	-1.6
1,417,565	-		GFF1392	0.43	-0.8
1,417,566	+		GFF1392	0.43	-1.1
1,417,575	-		GFF1392	0.43	+1.0
1,417,575	-		GFF1392	0.43	+0.1
1,417,577	+		GFF1392	0.43	+0.0
1,417,577	+		GFF1392	0.43	+1.1
1,417,661	-		GFF1392	0.49	+1.2
1,417,675	+		GFF1392	0.50	-1.3
1,417,675	+		GFF1392	0.50	+0.3
1,417,675	+		GFF1392	0.50	-2.3
1,417,685	+		GFF1392	0.51	+0.6
1,417,685	+		GFF1392	0.51	-1.3
1,417,685	+		GFF1392	0.51	+0.5
1,417,693	-		GFF1392	0.51	+0.1
1,417,693	-		GFF1392	0.51	+0.1
1,417,693	-		GFF1392	0.51	-0.8
1,417,693	-		GFF1392	0.51	-0.7
1,417,693	-		GFF1392	0.51	+0.3
1,417,705	+		GFF1392	0.52	-0.8
1,417,710	-		GFF1392	0.52	-0.1
1,417,725	-		GFF1392	0.53	-1.4
1,417,730	-		GFF1392	0.53	-1.6
1,417,730	-		GFF1392	0.53	-1.3
1,417,739	+		GFF1392	0.54	-1.0
1,417,753	+		GFF1392	0.55	+0.6
1,417,762	-		GFF1392	0.56	-0.2
1,417,770	-		GFF1392	0.56	-1.4
1,417,770	-		GFF1392	0.56	-1.7
1,417,786	+		GFF1392	0.57	-1.1
1,417,791	+		GFF1392	0.57	-2.0
1,417,792	+		GFF1392	0.57	+0.2
1,417,794	-		GFF1392	0.58	-0.0
1,417,802	+		GFF1392	0.58	-0.5
1,417,803	+		GFF1392	0.58	-0.8
1,417,816	+		GFF1392	0.59	+0.1
1,417,816	-		GFF1392	0.59	-1.0
1,417,819	+		GFF1392	0.59	-1.4
1,417,820	+		GFF1392	0.59	-0.2
1,417,825	+		GFF1392	0.60	+0.5
1,417,827	-		GFF1392	0.60	-0.9
1,417,838	-		GFF1392	0.60	-1.8
1,417,838	-		GFF1392	0.60	-0.5
1,417,839	+		GFF1392	0.61	-2.1
1,417,840	-		GFF1392	0.61	-0.9
1,417,847	-		GFF1392	0.61	-0.5
1,417,891	+		GFF1392	0.64	-2.5
1,417,899	-		GFF1392	0.64	-0.7
1,417,899	-		GFF1392	0.64	+0.5
1,417,899	-		GFF1392	0.64	-0.2
1,417,899	-		GFF1392	0.64	-1.7
1,417,899	-		GFF1392	0.64	+0.2
1,417,909	+		GFF1392	0.65	+0.0
1,417,935	+		GFF1392	0.67	+0.2
1,417,935	+		GFF1392	0.67	+0.7
1,417,935	+		GFF1392	0.67	-0.4
1,417,943	-		GFF1392	0.67	+0.7
1,417,943	-		GFF1392	0.67	+0.1
1,417,950	-		GFF1392	0.68	-0.1
1,417,951	+		GFF1392	0.68	+0.8
1,417,951	+		GFF1392	0.68	-0.3
1,417,954	-		GFF1392	0.68	-2.0
1,417,969	-		GFF1392	0.69	+0.2
1,417,978	+		GFF1392	0.70	+0.6
1,417,978	+		GFF1392	0.70	+1.0
1,418,012	+		GFF1392	0.72	-0.7
1,418,012	+		GFF1392	0.72	-0.7
1,418,016	-		GFF1392	0.72	+1.0
1,418,047	+		GFF1392	0.74	+1.8
1,418,047	+		GFF1392	0.74	-0.3
1,418,047	+		GFF1392	0.74	-1.1
1,418,047	+		GFF1392	0.74	-1.6
1,418,047	+		GFF1392	0.74	-1.5
1,418,047	+		GFF1392	0.74	-1.1
1,418,047	+		GFF1392	0.74	+0.1
1,418,047	+		GFF1392	0.74	+0.6
1,418,053	+		GFF1392	0.74	-0.7
1,418,053	+		GFF1392	0.74	-1.0
1,418,053	-		GFF1392	0.74	-0.3
1,418,055	-		GFF1392	0.75	-1.4
1,418,055	-		GFF1392	0.75	-0.2
1,418,055	-		GFF1392	0.75	-1.2
1,418,055	-		GFF1392	0.75	+0.5
1,418,055	-		GFF1392	0.75	-0.5
1,418,055	-		GFF1392	0.75	-0.1
1,418,055	-		GFF1392	0.75	-0.1
1,418,055	-		GFF1392	0.75	-0.3
1,418,055	-		GFF1392	0.75	-0.9
1,418,055	-		GFF1392	0.75	+0.5
1,418,055	-		GFF1392	0.75	+0.3
1,418,057	+		GFF1392	0.75	+0.1
1,418,057	+		GFF1392	0.75	-1.2
1,418,061	-		GFF1392	0.75	+0.8
1,418,061	-		GFF1392	0.75	+0.1
1,418,066	+		GFF1392	0.75	-0.4
1,418,074	-		GFF1392	0.76	-0.2
1,418,093	+		GFF1392	0.77	-1.8
1,418,149	-		GFF1392	0.81	-0.4
1,418,174	-		GFF1392	0.82	-1.8
1,418,179	+		GFF1392	0.83	+0.6
1,418,179	+		GFF1392	0.83	-1.0
1,418,182	-		GFF1392	0.83	-0.4
1,418,187	-		GFF1392	0.83	+0.4
1,418,189	+		GFF1392	0.83	+0.8
1,418,236	-		GFF1392	0.86	+1.0
1,418,291	+				-0.4
1,418,292	+				-3.1
1,418,298	+				-0.9
1,418,299	-				-1.0
1,418,334	-				-0.6
1,418,341	+				-0.8
1,418,358	+				-0.8
1,418,368	-				-0.2
1,418,373	+				-1.1
1,418,378	+				+0.7
1,418,392	+				+0.7
1,418,392	-				-0.6
1,418,418	-				+0.2
1,418,433	+				-0.4
1,418,441	-				-1.0
1,418,454	+				-0.7
1,418,463	+				+0.6
1,418,469	-				-1.9
1,418,510	+				+0.3
1,418,510	+				-1.4
1,418,520	+				-1.4
1,418,529	+				-0.2
1,418,532	-				-0.1
1,418,536	-				-0.4
1,418,538	+				-1.4
1,418,544	+				-0.3
1,418,546	-				+0.2
1,418,552	-				+1.5
1,418,603	-				-1.6
1,418,620	+				+0.8
1,418,649	+				+0.4
1,418,649	+				+0.4
1,418,649	+				-1.3
1,418,657	-				-0.7
1,418,657	-				+1.2
1,418,657	-				-1.9
1,418,657	-				-1.4
1,418,657	-				-1.1
1,418,679	+		GFF1393	0.11	+1.4
1,418,696	+		GFF1393	0.12	+0.7
1,418,701	+		GFF1393	0.12	+0.2
1,418,739	+		GFF1393	0.14	+0.8
1,418,739	+		GFF1393	0.14	+0.6
1,418,740	-		GFF1393	0.14	-1.3
1,418,740	-		GFF1393	0.14	-0.7
1,418,744	+		GFF1393	0.14	-1.8
1,418,747	-		GFF1393	0.14	-0.2
1,418,754	+		GFF1393	0.15	+0.9
1,418,754	+		GFF1393	0.15	-0.9
1,418,754	+		GFF1393	0.15	-1.3
1,418,755	-		GFF1393	0.15	-0.0
1,418,755	-		GFF1393	0.15	-0.1
1,418,762	-		GFF1393	0.15	+0.5
1,418,762	-		GFF1393	0.15	-0.4
1,418,762	-		GFF1393	0.15	-0.8
1,418,769	+		GFF1393	0.15	-1.1
1,418,769	+		GFF1393	0.15	+0.6
1,418,777	-		GFF1393	0.16	-0.8
1,418,777	-		GFF1393	0.16	-0.1
1,418,777	-		GFF1393	0.16	-0.1
1,418,801	+		GFF1393	0.17	-2.6
1,418,809	-		GFF1393	0.17	+0.5
1,418,809	-		GFF1393	0.17	-1.9
1,418,809	-		GFF1393	0.17	-0.5
1,418,809	-		GFF1393	0.17	-0.8
1,418,822	+		GFF1393	0.18	+0.5
1,418,830	-		GFF1393	0.18	-0.6
1,418,838	-		GFF1393	0.19	-1.6
1,418,840	+		GFF1393	0.19	+0.3
1,418,848	-		GFF1393	0.19	-1.4
1,418,874	+		GFF1393	0.20	+0.3
1,418,898	+		GFF1393	0.21	-0.8
1,418,898	+		GFF1393	0.21	+0.3
1,418,898	+		GFF1393	0.21	-2.3
1,418,898	+		GFF1393	0.21	+0.1
1,418,898	+		GFF1393	0.21	-0.2
1,418,904	+		GFF1393	0.22	-0.2
1,418,906	-		GFF1393	0.22	-1.1
1,418,906	-		GFF1393	0.22	-1.0
1,418,906	-		GFF1393	0.22	-0.4
1,418,906	-		GFF1393	0.22	-1.8
1,418,909	+		GFF1393	0.22	-0.1
1,418,909	+		GFF1393	0.22	+0.3
1,418,909	+		GFF1393	0.22	-0.6
1,418,909	+		GFF1393	0.22	-0.3
1,418,909	+		GFF1393	0.22	-0.3
1,418,909	+		GFF1393	0.22	-0.7
1,418,909	+		GFF1393	0.22	+1.1
1,418,909	+		GFF1393	0.22	-0.3
1,418,909	+		GFF1393	0.22	-0.8
1,418,909	+		GFF1393	0.22	-0.0
1,418,917	-		GFF1393	0.22	-0.3
1,418,917	-		GFF1393	0.22	-0.4
1,418,917	-		GFF1393	0.22	+0.4
1,418,917	-		GFF1393	0.22	-1.1
1,418,927	+		GFF1393	0.23	-2.4
1,418,930	+		GFF1393	0.23	-1.6
1,418,936	+		GFF1393	0.23	-0.1
1,418,944	-		GFF1393	0.24	-1.6
1,418,946	+		GFF1393	0.24	-0.7
1,418,953	+		GFF1393	0.24	+0.2
1,418,974	+		GFF1393	0.25	-1.3
1,418,975	+		GFF1393	0.25	-1.2
1,418,975	+		GFF1393	0.25	+0.9
1,418,983	-		GFF1393	0.26	-1.4
1,418,983	-		GFF1393	0.26	-1.1
1,418,983	-		GFF1393	0.26	-0.0
1,418,992	-		GFF1393	0.26	-0.2
1,419,023	+		GFF1393	0.27	+0.5
1,419,031	-		GFF1393	0.28	+0.3
1,419,037	+		GFF1393	0.28	-0.6
1,419,038	-		GFF1393	0.28	-0.2
1,419,038	-		GFF1393	0.28	+0.9
1,419,043	-		GFF1393	0.28	+1.2
1,419,043	-		GFF1393	0.28	-0.8
1,419,045	+		GFF1393	0.28	-0.5
1,419,055	+		GFF1393	0.29	-0.3
1,419,055	+		GFF1393	0.29	+1.1
1,419,055	+		GFF1393	0.29	+0.8
1,419,063	-		GFF1393	0.29	+1.0
1,419,064	+		GFF1393	0.29	+0.6
1,419,064	+		GFF1393	0.29	-0.4
1,419,064	+		GFF1393	0.29	+1.0
1,419,064	+		GFF1393	0.29	+0.2
1,419,064	+		GFF1393	0.29	-2.3
1,419,064	+		GFF1393	0.29	-1.7
1,419,064	+		GFF1393	0.29	-0.4
1,419,064	+		GFF1393	0.29	-2.8
1,419,064	+		GFF1393	0.29	-1.1
1,419,064	+		GFF1393	0.29	-2.1
1,419,072	-		GFF1393	0.30	-0.1
1,419,072	-		GFF1393	0.30	-1.6
1,419,072	-		GFF1393	0.30	+0.8
1,419,072	-		GFF1393	0.30	+0.7
1,419,072	-		GFF1393	0.30	-0.8
1,419,072	-		GFF1393	0.30	-0.4
1,419,072	-		GFF1393	0.30	+0.4
1,419,072	-		GFF1393	0.30	-2.6
1,419,072	-		GFF1393	0.30	-0.3
1,419,072	-		GFF1393	0.30	-0.7
1,419,077	-		GFF1393	0.30	-0.7
1,419,091	+		GFF1393	0.31	-0.2
1,419,130	+		GFF1393	0.33	+1.7
1,419,130	+		GFF1393	0.33	-0.2
1,419,130	+		GFF1393	0.33	-0.8
1,419,133	-		GFF1393	0.33	-0.8
1,419,138	-		GFF1393	0.33	+0.1
1,419,138	-		GFF1393	0.33	-0.1
1,419,138	-		GFF1393	0.33	+0.4
1,419,143	-		GFF1393	0.33	-0.3
1,419,182	+		GFF1393	0.35	-0.7
1,419,189	+		GFF1393	0.35	-1.8
1,419,196	+		GFF1393	0.36	+0.3
1,419,196	-		GFF1393	0.36	-0.7
1,419,198	-		GFF1393	0.36	-0.0
1,419,264	-		GFF1393	0.39	-0.7
1,419,281	+		GFF1393	0.40	-0.7
1,419,281	+		GFF1393	0.40	-1.4
1,419,281	+		GFF1393	0.40	-0.1
1,419,281	+		GFF1393	0.40	-2.6
1,419,281	+		GFF1393	0.40	-0.3
1,419,289	-		GFF1393	0.40	-2.0
1,419,289	-		GFF1393	0.40	-0.3
1,419,299	+		GFF1393	0.41	-0.1
1,419,338	+		GFF1393	0.43	+0.5
1,419,338	+		GFF1393	0.43	+0.9
1,419,338	+		GFF1393	0.43	+0.5
1,419,357	+		GFF1393	0.43	-1.1
1,419,385	-		GFF1393	0.45	+0.3
1,419,385	-		GFF1393	0.45	-0.5
1,419,392	-		GFF1393	0.45	+0.0
1,419,397	-		GFF1393	0.45	+0.1
1,419,400	+		GFF1393	0.45	-1.7
1,419,436	-		GFF1393	0.47	+0.2
1,419,436	-		GFF1393	0.47	+1.0
1,419,451	-		GFF1393	0.48	-0.0
1,419,456	-		GFF1393	0.48	-0.4
1,419,457	+		GFF1393	0.48	-0.4
1,419,472	-		GFF1393	0.49	-0.3
1,419,472	-		GFF1393	0.49	-0.5
1,419,485	-		GFF1393	0.50	-0.9
1,419,495	-		GFF1393	0.50	-1.0
1,419,514	+		GFF1393	0.51	-0.3
1,419,536	+		GFF1393	0.52	-1.3
1,419,544	-		GFF1393	0.52	-1.3
1,419,565	-		GFF1393	0.53	+0.5
1,419,565	-		GFF1393	0.53	-1.3
1,419,601	+		GFF1393	0.55	+0.7
1,419,601	+		GFF1393	0.55	+1.1
1,419,601	+		GFF1393	0.55	-0.1
1,419,601	+		GFF1393	0.55	-0.1
1,419,601	+		GFF1393	0.55	-0.5
1,419,601	+		GFF1393	0.55	-0.2
1,419,606	+		GFF1393	0.55	+0.3
1,419,608	+		GFF1393	0.55	-0.1
1,419,608	+		GFF1393	0.55	+0.8
1,419,609	-		GFF1393	0.56	-0.6
1,419,615	-		GFF1393	0.56	-0.4
1,419,623	+		GFF1393	0.56	+1.9
1,419,633	-		GFF1393	0.57	-0.1
1,419,645	+		GFF1393	0.57	-0.9
1,419,645	+		GFF1393	0.57	-0.1
1,419,653	-		GFF1393	0.58	+1.4
1,419,673	-		GFF1393	0.59	-0.3
1,419,677	-		GFF1393	0.59	-1.8
1,419,691	+		GFF1393	0.59	-0.4
1,419,694	-		GFF1393	0.60	-0.2
1,419,699	-		GFF1393	0.60	+1.4
1,419,705	-		GFF1393	0.60	-1.3
1,419,705	-		GFF1393	0.60	-2.1
1,419,705	-		GFF1393	0.60	-0.5
1,419,737	-		GFF1393	0.62	-1.7
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1,420,165	+		GFF1393	0.82	+1.3
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1,420,259	-		GFF1393	0.87	-0.4
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1,420,292	+		GFF1393	0.88	-0.0
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1,420,310	-		GFF1393	0.89	-3.0
1,420,313	+		GFF1393	0.89	-2.7
1,420,334	+				-1.8
1,420,336	+				-0.1
1,420,358	+				+1.0
1,420,358	-				-1.2
1,420,359	-				-0.0
1,420,361	+				-0.1
1,420,361	+				-0.1
1,420,361	+				+0.3
1,420,361	+				+0.6
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1,420,369	-				+0.3
1,420,379	-				-1.3
1,420,404	+				-1.4
1,420,404	+				-1.2
1,420,404	+				-0.0
1,420,412	-				+0.9
1,420,412	-				-1.5
1,420,412	-				+0.4
1,420,449	-				-0.7
1,420,463	+				+1.1
1,420,464	+				-1.0
1,420,517	+				+1.3
1,420,517	+				+0.2
1,420,525	-				+0.9
1,420,529	+				+1.2
1,420,529	+				+0.2
1,420,537	-				-0.0
1,420,547	-				-0.8
1,420,561	+				+0.1
1,420,561	+				-1.4
1,420,562	-				+0.5
1,420,569	-				-1.8
1,420,588	-				-1.3
1,420,603	-				-0.3
1,420,605	-				-0.4
1,420,607	+				+0.9
1,420,607	+				-0.4
1,420,607	+				-1.6
1,420,607	+				-0.3
1,420,607	+				-0.8
1,420,607	+				+0.7
1,420,607	+				-0.0
1,420,607	+				-0.2
1,420,607	+				+0.3
1,420,607	+				-0.7
1,420,607	+				+0.0
1,420,607	+				+0.3
1,420,607	+				+0.2
1,420,607	+				+0.3
1,420,607	+				-0.3
1,420,607	+				+0.6
1,420,607	+				-1.1
1,420,607	+				+0.1
1,420,607	+				+1.2
1,420,607	+				-0.7
1,420,607	+				+0.1
1,420,607	+				+0.8
1,420,607	+				-0.4
1,420,607	+				-0.8
1,420,607	+				+0.4
1,420,607	+				-1.6
1,420,607	+				+0.2
1,420,607	+				+0.4
1,420,607	+				-1.3
1,420,615	-				+0.4
1,420,615	-				+0.7
1,420,615	-				-1.9
1,420,615	-				+0.4
1,420,615	-				+0.5
1,420,615	-				+0.1
1,420,615	-				+1.1
1,420,615	-				-0.3
1,420,615	-				-0.8
1,420,615	-				-0.1
1,420,615	-				+0.6
1,420,615	-				+1.1
1,420,615	-				+0.2
1,420,615	-				+0.1
1,420,615	-				+1.2
1,420,615	-				-0.8
1,420,615	-				-0.0
1,420,615	-				+1.3
1,420,615	-				+0.2
1,420,615	-				-1.0
1,420,615	-				-2.2
1,420,615	-				-2.4
1,420,615	-				-2.8
1,420,615	-				-0.8
1,420,615	-				+1.9
1,420,615	-				-1.8
1,420,615	-				+0.5
1,420,615	-				+0.8
1,420,615	-				-0.4
1,420,615	-				-1.1
1,420,615	-				-0.4
1,420,615	-				+0.2
1,420,615	-				-1.3
1,420,619	+				+0.1
1,420,627	-				+1.2
1,420,641	+				-1.0
1,420,641	+				-0.6
1,420,641	+				-0.3
1,420,641	+				-0.0
1,420,649	-				+0.0
1,420,649	-				+1.2
1,420,649	-				+0.2
1,420,668	+				+0.8
1,420,672	+				-1.3
1,420,672	+				-0.7
1,420,680	+				-1.3
1,420,680	+				+1.0
1,420,680	+				+1.7
1,420,680	+				+0.4
1,420,680	+				+0.2
1,420,680	+				-0.4
1,420,680	+				-0.7
1,420,680	+				-0.0
1,420,680	-				+1.2
1,420,685	+				+1.3
1,420,688	-				-0.4
1,420,688	-				-1.8
1,420,688	-				-1.3
1,420,688	-				-0.5
1,420,690	+				-0.0
1,420,695	+				-0.3
1,420,703	-				-1.0
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1,420,765	+		GFF1394	0.12	-0.1
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1,420,796	+		GFF1394	0.13	-0.8
1,420,802	+		GFF1394	0.13	-0.6
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1,420,812	+		GFF1394	0.14	-1.3
1,420,824	+		GFF1394	0.14	-0.7
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1,420,827	-		GFF1394	0.15	-2.1
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1,420,832	-		GFF1394	0.15	-1.0
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1,420,837	-		GFF1394	0.15	+0.6
1,420,837	-		GFF1394	0.15	-0.1
1,420,837	-		GFF1394	0.15	-1.3
1,420,845	-		GFF1394	0.15	-1.6
1,420,872	+		GFF1394	0.17	-0.4
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1,420,880	-		GFF1394	0.17	-1.0
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1,420,880	-		GFF1394	0.17	-0.7
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1,420,880	-		GFF1394	0.17	-1.5
1,420,880	-		GFF1394	0.17	-1.2
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1,420,909	+		GFF1394	0.19	-0.6
1,420,911	-		GFF1394	0.19	-1.8
1,420,917	-		GFF1394	0.19	+0.2
1,420,930	-		GFF1394	0.20	-1.3
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1,420,999	+		GFF1394	0.23	-0.6
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1,421,058	+		GFF1394	0.26	-0.6
1,421,071	-		GFF1394	0.26	-0.9
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1,421,083	+		GFF1394	0.27	+0.3
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1,421,091	-		GFF1394	0.27	-1.9
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1,421,323	+		GFF1394	0.38	-1.1
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1,421,381	+		GFF1394	0.41	-1.8
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