Strain Fitness in Sphingobium sp. HT1-2 around GFF1254

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,280,939	+		GFF1252	0.89	+1.2
1,280,947	-		GFF1252	0.90	+0.3
1,280,962	+				-1.3
1,280,965	-				-1.4
1,280,965	-				-0.2
1,280,982	+				-1.1
1,280,990	-				-0.1
1,281,018	+				+0.2
1,281,018	+				-0.5
1,281,018	+				-2.4
1,281,020	-				-0.7
1,281,026	-				-0.8
1,281,039	-				-2.0
1,281,040	+				-1.2
1,281,046	+				+0.6
1,281,046	+				+0.2
1,281,047	-				-0.4
1,281,049	+				-0.8
1,281,064	+				-0.9
1,281,070	-				-0.5
1,281,073	+				+0.2
1,281,073	+				+0.1
1,281,081	-				-0.4
1,281,102	+				-2.0
1,281,102	+				+0.4
1,281,102	+				-1.8
1,281,102	+				+0.7
1,281,110	-				-0.1
1,281,110	-				+0.9
1,281,110	-				-0.1
1,281,110	-				-0.9
1,281,110	-				+0.5
1,281,110	-				-1.7
1,281,125	-				-1.1
1,281,126	+				-1.0
1,281,160	-				-0.6
1,281,167	+				-1.3
1,281,167	-				-0.9
1,281,231	+		GFF1253	0.17	-0.7
1,281,232	+		GFF1253	0.18	-1.1
1,281,253	+		GFF1253	0.20	-1.2
1,281,258	+		GFF1253	0.21	+0.9
1,281,258	+		GFF1253	0.21	+0.3
1,281,258	+		GFF1253	0.21	-1.3
1,281,266	-		GFF1253	0.22	+0.5
1,281,302	-		GFF1253	0.26	+0.1
1,281,302	-		GFF1253	0.26	-0.4
1,281,314	+		GFF1253	0.27	+0.4
1,281,316	-		GFF1253	0.27	-1.8
1,281,319	+		GFF1253	0.28	+0.3
1,281,319	+		GFF1253	0.28	-0.4
1,281,319	+		GFF1253	0.28	-0.4
1,281,327	-		GFF1253	0.29	-0.7
1,281,333	+		GFF1253	0.29	+0.9
1,281,338	+		GFF1253	0.30	-1.9
1,281,338	+		GFF1253	0.30	-2.0
1,281,352	+		GFF1253	0.32	+0.1
1,281,352	+		GFF1253	0.32	+0.2
1,281,352	+		GFF1253	0.32	-0.4
1,281,352	+		GFF1253	0.32	-1.7
1,281,352	+		GFF1253	0.32	-0.6
1,281,352	+		GFF1253	0.32	-2.7
1,281,360	-		GFF1253	0.33	-0.6
1,281,360	-		GFF1253	0.33	+1.0
1,281,360	-		GFF1253	0.33	+0.1
1,281,360	-		GFF1253	0.33	-0.6
1,281,360	-		GFF1253	0.33	-0.7
1,281,360	-		GFF1253	0.33	-0.3
1,281,360	-		GFF1253	0.33	+0.4
1,281,360	-		GFF1253	0.33	-2.1
1,281,360	-		GFF1253	0.33	-1.7
1,281,374	+		GFF1253	0.34	-0.1
1,281,374	+		GFF1253	0.34	-1.0
1,281,381	-		GFF1253	0.35	-0.3
1,281,381	-		GFF1253	0.35	-0.3
1,281,381	-		GFF1253	0.35	+0.3
1,281,386	+		GFF1253	0.36	-0.7
1,281,391	+		GFF1253	0.36	-1.5
1,281,420	-		GFF1253	0.40	-0.3
1,281,453	+		GFF1253	0.44	-1.6
1,281,453	+		GFF1253	0.44	-0.0
1,281,453	+		GFF1253	0.44	-1.3
1,281,453	+		GFF1253	0.44	-0.4
1,281,453	+		GFF1253	0.44	-0.8
1,281,453	+		GFF1253	0.44	-0.9
1,281,461	-		GFF1253	0.45	-0.6
1,281,461	-		GFF1253	0.45	-1.3
1,281,461	-		GFF1253	0.45	+1.8
1,281,473	-		GFF1253	0.46	-1.5
1,281,491	+		GFF1253	0.48	-0.9
1,281,491	+		GFF1253	0.48	-0.3
1,281,491	+		GFF1253	0.48	+1.1
1,281,491	+		GFF1253	0.48	-0.4
1,281,491	+		GFF1253	0.48	+1.0
1,281,491	+		GFF1253	0.48	+0.7
1,281,491	+		GFF1253	0.48	-1.3
1,281,499	-		GFF1253	0.49	+0.4
1,281,499	-		GFF1253	0.49	+0.5
1,281,499	-		GFF1253	0.49	-0.6
1,281,499	-		GFF1253	0.49	+0.7
1,281,499	-		GFF1253	0.49	-1.6
1,281,499	-		GFF1253	0.49	+0.6
1,281,499	-		GFF1253	0.49	-0.3
1,281,499	-		GFF1253	0.49	-0.3
1,281,501	-		GFF1253	0.49	-0.6
1,281,504	-		GFF1253	0.50	+0.2
1,281,509	-		GFF1253	0.50	-0.4
1,281,511	+		GFF1253	0.50	-0.9
1,281,513	-		GFF1253	0.51	+0.3
1,281,535	+		GFF1253	0.53	-0.0
1,281,535	+		GFF1253	0.53	+0.4
1,281,535	+		GFF1253	0.53	-2.6
1,281,543	-		GFF1253	0.54	+0.7
1,281,543	-		GFF1253	0.54	-0.8
1,281,543	-		GFF1253	0.54	-0.1
1,281,543	-		GFF1253	0.54	+0.0
1,281,543	-		GFF1253	0.54	-0.4
1,281,548	-		GFF1253	0.55	+0.3
1,281,559	+		GFF1253	0.56	-1.7
1,281,567	-		GFF1253	0.57	+0.3
1,281,567	-		GFF1253	0.57	-1.1
1,281,567	-		GFF1253	0.57	-0.5
1,281,591	-		GFF1253	0.60	+0.1
1,281,611	-		GFF1253	0.62	-0.9
1,281,622	-		GFF1253	0.63	-0.1
1,281,640	-		GFF1253	0.66	-0.5
1,281,655	-		GFF1253	0.67	+0.8
1,281,660	-		GFF1253	0.68	-0.7
1,281,677	+		GFF1253	0.70	-0.4
1,281,692	+		GFF1253	0.72	-1.4
1,281,699	-		GFF1253	0.73	-0.0
1,281,710	+		GFF1253	0.74	-2.6
1,281,718	+		GFF1253	0.75	-1.5
1,281,718	+		GFF1253	0.75	-1.1
1,281,718	+		GFF1253	0.75	-1.5
1,281,718	+		GFF1253	0.75	+1.2
1,281,718	+		GFF1253	0.75	-0.9
1,281,718	+		GFF1253	0.75	+0.3
1,281,718	+		GFF1253	0.75	-0.9
1,281,719	+		GFF1253	0.75	-1.3
1,281,719	+		GFF1253	0.75	-0.0
1,281,726	-		GFF1253	0.76	+0.1
1,281,726	-		GFF1253	0.76	+1.3
1,281,727	-		GFF1253	0.76	+0.2
1,281,727	-		GFF1253	0.76	-0.9
1,281,753	-		GFF1253	0.79	-0.0
1,281,764	-		GFF1253	0.80	-0.9
1,281,770	+		GFF1253	0.81	-1.5
1,281,778	-		GFF1253	0.82	-1.3
1,281,778	-		GFF1253	0.82	+0.4
1,281,785	-		GFF1253	0.83	-0.2
1,281,785	-		GFF1253	0.83	+0.1
1,281,789	+		GFF1253	0.83	+0.2
1,281,797	-		GFF1253	0.84	+0.1
1,281,797	-		GFF1253	0.84	-0.4
1,281,806	+		GFF1253	0.85	+0.9
1,281,806	+		GFF1253	0.85	+0.7
1,281,814	-		GFF1253	0.86	+0.1
1,281,815	-		GFF1253	0.86	+0.5
1,281,827	+		GFF1253	0.88	-0.1
1,281,834	+		GFF1253	0.88	-0.9
1,281,842	-		GFF1253	0.89	+0.6
1,281,843	-		GFF1253	0.90	-0.8
1,281,852	+				-0.9
1,281,860	-				-0.6
1,281,863	+				-0.4
1,281,863	+				+0.3
1,281,863	+				-0.5
1,281,863	+				-0.6
1,281,867	+				-1.4
1,281,870	-				-0.4
1,281,877	+				-0.4
1,281,900	-				-1.4
1,281,900	-				-0.6
1,281,901	+				-0.2
1,281,933	-				+0.4
1,281,933	-				-0.2
1,281,975	-				-2.0
1,281,979	-				+0.1
1,281,980	+				-1.7
1,281,981	+				+0.9
1,281,981	+				+0.2
1,281,981	+				+0.4
1,281,981	+				-1.9
1,281,981	+				+0.6
1,281,986	+				-0.2
1,281,986	+				-0.9
1,281,989	-				-1.7
1,281,989	-				-1.0
1,281,989	-				-0.6
1,281,989	-				+1.1
1,282,013	+				-0.3
1,282,013	+				-1.1
1,282,014	+				-0.5
1,282,021	-				+0.0
1,282,021	-				+0.6
1,282,021	-				+0.7
1,282,033	-				+0.8
1,282,040	-				+0.3
1,282,051	+				-1.1
1,282,059	+				+0.9
1,282,089	-		GFF1254	0.11	+0.7
1,282,100	+		GFF1254	0.12	-0.8
1,282,124	+		GFF1254	0.14	-1.1
1,282,124	+		GFF1254	0.14	+0.1
1,282,124	-		GFF1254	0.14	-0.7
1,282,132	-		GFF1254	0.14	-0.5
1,282,137	+		GFF1254	0.15	-0.9
1,282,161	+		GFF1254	0.16	-1.1
1,282,161	+		GFF1254	0.16	-0.9
1,282,169	-		GFF1254	0.17	-1.3
1,282,191	+		GFF1254	0.18	+0.6
1,282,201	+		GFF1254	0.19	+0.3
1,282,209	-		GFF1254	0.20	-0.1
1,282,283	+		GFF1254	0.25	+0.0
1,282,291	-		GFF1254	0.26	+0.2
1,282,295	-		GFF1254	0.26	+1.4
1,282,314	-		GFF1254	0.27	-0.3
1,282,325	+		GFF1254	0.28	-0.6
1,282,329	+		GFF1254	0.28	+0.5
1,282,329	+		GFF1254	0.28	-0.9
1,282,329	+		GFF1254	0.28	+0.1
1,282,333	-		GFF1254	0.28	+0.2
1,282,335	+		GFF1254	0.29	-0.4
1,282,343	-		GFF1254	0.29	-0.8
1,282,382	+		GFF1254	0.32	-0.9
1,282,382	+		GFF1254	0.32	-0.6
1,282,382	+		GFF1254	0.32	-1.1
1,282,387	+		GFF1254	0.32	-2.7
1,282,387	+		GFF1254	0.32	-1.9
1,282,390	-		GFF1254	0.32	-1.7
1,282,390	-		GFF1254	0.32	-0.3
1,282,390	-		GFF1254	0.32	+0.4
1,282,392	+		GFF1254	0.33	-0.8
1,282,400	-		GFF1254	0.33	+0.2
1,282,400	-		GFF1254	0.33	-1.6
1,282,431	+		GFF1254	0.35	-0.6
1,282,431	+		GFF1254	0.35	-0.6
1,282,431	+		GFF1254	0.35	+0.2
1,282,453	+		GFF1254	0.37	+0.3
1,282,453	+		GFF1254	0.37	-1.5
1,282,453	+		GFF1254	0.37	-0.8
1,282,456	+		GFF1254	0.37	+1.2
1,282,461	-		GFF1254	0.37	+0.4
1,282,471	+		GFF1254	0.38	+1.0
1,282,471	+		GFF1254	0.38	-0.5
1,282,471	+		GFF1254	0.38	+1.3
1,282,471	+		GFF1254	0.38	-2.1
1,282,479	-		GFF1254	0.39	-0.3
1,282,479	-		GFF1254	0.39	+0.4
1,282,479	-		GFF1254	0.39	-1.1
1,282,479	-		GFF1254	0.39	-1.6
1,282,479	-		GFF1254	0.39	-0.6
1,282,479	-		GFF1254	0.39	-0.5
1,282,479	-		GFF1254	0.39	-0.7
1,282,504	-		GFF1254	0.41	-0.5
1,282,504	-		GFF1254	0.41	-1.5
1,282,513	-		GFF1254	0.41	-0.8
1,282,528	-		GFF1254	0.42	-0.1
1,282,536	+		GFF1254	0.43	+0.3
1,282,536	+		GFF1254	0.43	-1.0
1,282,544	-		GFF1254	0.43	-0.8
1,282,544	-		GFF1254	0.43	-1.3
1,282,544	-		GFF1254	0.43	-0.2
1,282,551	-		GFF1254	0.44	+0.2
1,282,552	-		GFF1254	0.44	-1.2
1,282,556	+		GFF1254	0.44	+0.9
1,282,561	+		GFF1254	0.45	+0.9
1,282,564	-		GFF1254	0.45	-0.1
1,282,577	+		GFF1254	0.46	-0.4
1,282,582	+		GFF1254	0.46	+0.2
1,282,587	+		GFF1254	0.46	+0.6
1,282,592	+		GFF1254	0.47	+0.3
1,282,601	+		GFF1254	0.47	+0.0
1,282,616	+		GFF1254	0.48	-0.8
1,282,616	+		GFF1254	0.48	-1.6
1,282,619	-		GFF1254	0.49	-0.2
1,282,624	-		GFF1254	0.49	-0.3
1,282,626	+		GFF1254	0.49	-0.3
1,282,626	+		GFF1254	0.49	-0.2
1,282,634	-		GFF1254	0.50	-0.5
1,282,634	-		GFF1254	0.50	-0.2
1,282,666	+		GFF1254	0.52	-1.8
1,282,669	-		GFF1254	0.52	+0.3
1,282,671	+		GFF1254	0.52	-0.8
1,282,671	+		GFF1254	0.52	-0.6
1,282,674	-		GFF1254	0.52	-0.4
1,282,687	+		GFF1254	0.53	+0.8
1,282,695	-		GFF1254	0.54	-0.7
1,282,737	+		GFF1254	0.57	-1.0
1,282,738	+		GFF1254	0.57	-0.3
1,282,738	+		GFF1254	0.57	-2.6
1,282,738	+		GFF1254	0.57	-1.9
1,282,745	+		GFF1254	0.57	-1.6
1,282,746	-		GFF1254	0.58	-0.3
1,282,753	-		GFF1254	0.58	-2.3
1,282,753	-		GFF1254	0.58	-0.2
1,282,769	+		GFF1254	0.59	-0.3
1,282,769	+		GFF1254	0.59	-1.4
1,282,771	-		GFF1254	0.59	+1.8
1,282,777	-		GFF1254	0.60	+0.4
1,282,801	-		GFF1254	0.61	+0.4
1,282,826	+		GFF1254	0.63	-0.4
1,282,842	+		GFF1254	0.64	-0.4
1,282,850	-		GFF1254	0.65	-0.1
1,282,858	+		GFF1254	0.65	-0.1
1,282,860	-		GFF1254	0.66	-0.6
1,282,868	+		GFF1254	0.66	-0.3
1,282,873	+		GFF1254	0.66	-1.0
1,282,876	-		GFF1254	0.67	-0.9
1,282,919	+		GFF1254	0.70	+0.9
1,282,945	+		GFF1254	0.72	+0.5
1,282,953	-		GFF1254	0.72	+0.7
1,282,953	-		GFF1254	0.72	-0.6
1,282,954	+		GFF1254	0.72	-0.4
1,282,954	+		GFF1254	0.72	-0.4
1,282,954	+		GFF1254	0.72	-0.4
1,282,959	+		GFF1254	0.73	+1.4
1,282,959	+		GFF1254	0.73	+0.4
1,282,959	+		GFF1254	0.73	+0.4
1,282,959	+		GFF1254	0.73	-0.7
1,282,962	-		GFF1254	0.73	-1.2
1,282,962	-		GFF1254	0.73	-0.1
1,282,962	-		GFF1254	0.73	+0.1
1,282,962	-		GFF1254	0.73	+0.7
1,282,969	+		GFF1254	0.73	+0.6
1,282,977	-		GFF1254	0.74	+1.5
1,282,977	-		GFF1254	0.74	+0.5
1,282,982	-		GFF1254	0.74	-0.7
1,282,987	-		GFF1254	0.74	+0.4
1,282,992	-		GFF1254	0.75	-1.3
1,282,992	-		GFF1254	0.75	+0.1
1,283,000	+		GFF1254	0.75	-0.6
1,283,000	+		GFF1254	0.75	-0.4
1,283,000	+		GFF1254	0.75	+1.2
1,283,008	+		GFF1254	0.76	-0.3
1,283,008	-		GFF1254	0.76	+1.2
1,283,008	-		GFF1254	0.76	+0.8
1,283,008	-		GFF1254	0.76	-2.1
1,283,008	-		GFF1254	0.76	-1.4
1,283,008	-		GFF1254	0.76	-0.4
1,283,008	-		GFF1254	0.76	-1.8
1,283,008	-		GFF1254	0.76	+0.9
1,283,008	-		GFF1254	0.76	-0.4
1,283,008	-		GFF1254	0.76	-0.3
1,283,008	-		GFF1254	0.76	-0.3
1,283,010	+		GFF1254	0.76	-0.9
1,283,010	+		GFF1254	0.76	-1.5
1,283,015	+		GFF1254	0.76	-0.8
1,283,016	-		GFF1254	0.77	+0.4
1,283,016	-		GFF1254	0.77	+0.3
1,283,018	-		GFF1254	0.77	+0.4
1,283,023	+		GFF1254	0.77	-1.6
1,283,023	-		GFF1254	0.77	-2.1
1,283,023	-		GFF1254	0.77	-2.1
1,283,023	-		GFF1254	0.77	-1.3
1,283,033	+		GFF1254	0.78	-0.6
1,283,069	-		GFF1254	0.80	-0.2
1,283,085	-		GFF1254	0.81	+0.3
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1,283,264	+				+0.4
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1,283,333	-				+0.7
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1,283,358	+				-2.1
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1,283,367	-				-2.1
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