Strain Fitness in Sphingobium sp. HT1-2 around GFF1216

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,236,851	-				-0.7
1,236,892	+				+0.3
1,236,900	-				-0.4
1,236,900	-				-2.5
1,236,900	-				+0.4
1,236,920	-				-0.4
1,236,942	+		GFF1215	0.10	+0.6
1,236,959	+		GFF1215	0.12	-0.9
1,236,959	+		GFF1215	0.12	-0.7
1,236,959	+		GFF1215	0.12	+0.1
1,236,969	+		GFF1215	0.13	-0.7
1,236,977	-		GFF1215	0.14	-1.4
1,236,992	+		GFF1215	0.15	-0.4
1,236,992	+		GFF1215	0.15	+1.7
1,237,016	+		GFF1215	0.18	-2.1
1,237,017	+		GFF1215	0.18	+0.1
1,237,017	+		GFF1215	0.18	-1.0
1,237,025	-		GFF1215	0.19	-0.0
1,237,044	+		GFF1215	0.21	-1.0
1,237,044	+		GFF1215	0.21	-1.3
1,237,044	+		GFF1215	0.21	+0.0
1,237,044	+		GFF1215	0.21	-1.8
1,237,044	+		GFF1215	0.21	-0.7
1,237,044	+		GFF1215	0.21	+0.2
1,237,049	+		GFF1215	0.21	-1.6
1,237,052	-		GFF1215	0.21	-0.0
1,237,052	-		GFF1215	0.21	-0.4
1,237,052	-		GFF1215	0.21	+1.1
1,237,052	-		GFF1215	0.21	-1.3
1,237,062	-		GFF1215	0.22	-1.9
1,237,065	+		GFF1215	0.23	-1.6
1,237,085	-		GFF1215	0.25	+0.1
1,237,085	-		GFF1215	0.25	+0.9
1,237,119	+		GFF1215	0.28	-1.0
1,237,119	+		GFF1215	0.28	-1.4
1,237,119	+		GFF1215	0.28	-0.4
1,237,119	+		GFF1215	0.28	-0.1
1,237,127	-		GFF1215	0.29	-0.9
1,237,127	-		GFF1215	0.29	-1.4
1,237,127	-		GFF1215	0.29	-0.5
1,237,145	+		GFF1215	0.31	-0.2
1,237,145	+		GFF1215	0.31	+0.5
1,237,148	-		GFF1215	0.31	-1.7
1,237,153	-		GFF1215	0.31	-0.4
1,237,153	-		GFF1215	0.31	-0.0
1,237,173	+		GFF1215	0.33	-0.7
1,237,193	+		GFF1215	0.35	-0.3
1,237,203	+		GFF1215	0.36	+0.0
1,237,203	+		GFF1215	0.36	+0.6
1,237,208	+		GFF1215	0.37	-0.0
1,237,216	-		GFF1215	0.38	-0.2
1,237,216	-		GFF1215	0.38	+0.7
1,237,221	-		GFF1215	0.38	-1.4
1,237,244	+		GFF1215	0.40	-3.0
1,237,272	+		GFF1215	0.43	-1.3
1,237,317	+		GFF1215	0.48	-2.2
1,237,332	+		GFF1215	0.49	-0.7
1,237,406	+		GFF1215	0.56	-0.4
1,237,421	-		GFF1215	0.58	+1.7
1,237,440	+		GFF1215	0.60	+0.7
1,237,440	+		GFF1215	0.60	-0.5
1,237,465	+		GFF1215	0.62	-2.0
1,237,469	-		GFF1215	0.63	+0.6
1,237,472	+		GFF1215	0.63	-0.8
1,237,481	-		GFF1215	0.64	-1.5
1,237,518	+		GFF1215	0.67	-1.4
1,237,518	+		GFF1215	0.67	+0.5
1,237,526	-		GFF1215	0.68	-0.7
1,237,534	+		GFF1215	0.69	+0.8
1,237,548	+		GFF1215	0.70	-2.2
1,237,576	+		GFF1215	0.73	-0.2
1,237,587	+		GFF1215	0.74	-1.1
1,237,592	+		GFF1215	0.75	-0.4
1,237,592	+		GFF1215	0.75	-1.3
1,237,592	+		GFF1215	0.75	-2.2
1,237,592	+		GFF1215	0.75	-0.8
1,237,592	+		GFF1215	0.75	+0.1
1,237,595	-		GFF1215	0.75	+1.1
1,237,595	-		GFF1215	0.75	-0.8
1,237,595	-		GFF1215	0.75	-0.0
1,237,600	-		GFF1215	0.76	-0.4
1,237,600	-		GFF1215	0.76	-1.2
1,237,600	-		GFF1215	0.76	-1.0
1,237,600	-		GFF1215	0.76	+0.6
1,237,600	-		GFF1215	0.76	-0.1
1,237,600	-		GFF1215	0.76	+1.3
1,237,623	+		GFF1215	0.78	+0.4
1,237,631	-		GFF1215	0.79	-0.7
1,237,633	+		GFF1215	0.79	-0.5
1,237,635	+		GFF1215	0.79	+1.0
1,237,639	+		GFF1215	0.79	-1.2
1,237,645	+		GFF1215	0.80	-2.6
1,237,645	+		GFF1215	0.80	+0.4
1,237,645	+		GFF1215	0.80	-0.3
1,237,645	+		GFF1215	0.80	-0.1
1,237,645	+		GFF1215	0.80	+0.7
1,237,645	+		GFF1215	0.80	+1.3
1,237,645	+		GFF1215	0.80	-0.8
1,237,646	+		GFF1215	0.80	+0.5
1,237,647	+		GFF1215	0.80	-0.2
1,237,652	+		GFF1215	0.81	-0.8
1,237,652	+		GFF1215	0.81	-1.4
1,237,652	+		GFF1215	0.81	-2.2
1,237,652	+		GFF1215	0.81	+0.1
1,237,652	+		GFF1215	0.81	-1.2
1,237,653	-		GFF1215	0.81	-2.0
1,237,653	-		GFF1215	0.81	+0.2
1,237,653	-		GFF1215	0.81	+0.9
1,237,653	-		GFF1215	0.81	+0.3
1,237,653	-		GFF1215	0.81	-0.5
1,237,653	-		GFF1215	0.81	-0.2
1,237,660	-		GFF1215	0.82	+0.0
1,237,660	-		GFF1215	0.82	+0.8
1,237,660	-		GFF1215	0.82	+0.2
1,237,660	-		GFF1215	0.82	-0.5
1,237,661	-		GFF1215	0.82	+0.9
1,237,677	-		GFF1215	0.83	-1.8
1,237,687	-		GFF1215	0.84	-0.1
1,237,711	+		GFF1215	0.87	+0.8
1,237,723	-		GFF1215	0.88	+1.2
1,237,733	-		GFF1215	0.89	-0.2
1,237,758	+				+0.7
1,237,758	+				-0.5
1,237,758	+				+1.1
1,237,758	-				-1.8
1,237,766	-				-1.8
1,237,780	+				-0.1
1,237,780	+				-2.0
1,237,788	-				+0.6
1,237,815	-				-1.5
1,237,823	-				-0.2
1,237,843	-				-0.7
1,237,885	+		GFF1216	0.11	+0.7
1,237,885	+		GFF1216	0.11	-1.7
1,237,885	+		GFF1216	0.11	-0.3
1,237,885	+		GFF1216	0.11	-1.5
1,237,885	+		GFF1216	0.11	+0.5
1,237,890	+		GFF1216	0.12	-0.2
1,237,890	+		GFF1216	0.12	+0.1
1,237,893	-		GFF1216	0.12	-1.4
1,237,893	-		GFF1216	0.12	-1.4
1,237,893	-		GFF1216	0.12	+0.8
1,237,893	-		GFF1216	0.12	+0.3
1,237,893	-		GFF1216	0.12	-0.4
1,237,893	-		GFF1216	0.12	-0.2
1,237,893	-		GFF1216	0.12	-2.1
1,237,893	-		GFF1216	0.12	+0.1
1,237,893	-		GFF1216	0.12	+0.3
1,237,893	-		GFF1216	0.12	-0.4
1,237,893	-		GFF1216	0.12	-2.2
1,237,895	+		GFF1216	0.13	-1.8
1,237,896	-		GFF1216	0.13	-0.5
1,237,898	-		GFF1216	0.13	-0.0
1,237,898	-		GFF1216	0.13	+0.0
1,237,903	+		GFF1216	0.14	-0.2
1,237,903	-		GFF1216	0.14	-1.0
1,237,923	-		GFF1216	0.19	+0.6
1,237,928	-		GFF1216	0.20	+1.1
1,237,936	+		GFF1216	0.22	-1.6
1,237,944	-		GFF1216	0.23	-0.4
1,237,961	+		GFF1216	0.27	+0.5
1,237,961	+		GFF1216	0.27	-1.0
1,237,969	-		GFF1216	0.29	+0.3
1,237,986	+		GFF1216	0.32	-0.7
1,237,987	+		GFF1216	0.32	-0.3
1,237,994	-		GFF1216	0.34	-0.7
1,237,994	-		GFF1216	0.34	-0.5
1,237,994	-		GFF1216	0.34	-1.7
1,238,059	+		GFF1216	0.48	+0.1
1,238,059	+		GFF1216	0.48	+0.3
1,238,059	+		GFF1216	0.48	+0.2
1,238,064	+		GFF1216	0.49	+0.3
1,238,067	-		GFF1216	0.50	-1.6
1,238,067	-		GFF1216	0.50	-0.8
1,238,072	-		GFF1216	0.51	+1.1
1,238,083	+		GFF1216	0.53	-0.9
1,238,091	-		GFF1216	0.55	+1.3
1,238,091	-		GFF1216	0.55	-0.2
1,238,110	-		GFF1216	0.59	+0.4
1,238,128	+		GFF1216	0.63	-0.0
1,238,136	-		GFF1216	0.65	-0.0
1,238,146	-		GFF1216	0.67	+0.2
1,238,173	+		GFF1216	0.72	+1.6
1,238,181	-		GFF1216	0.74	+0.3
1,238,186	-		GFF1216	0.75	+2.0
1,238,186	-		GFF1216	0.75	-0.1
1,238,191	-		GFF1216	0.76	-1.6
1,238,197	+		GFF1216	0.78	-1.5
1,238,197	+		GFF1216	0.78	-1.5
1,238,197	+		GFF1216	0.78	-0.6
1,238,197	+		GFF1216	0.78	+0.3
1,238,199	+		GFF1216	0.78	-2.8
1,238,199	+		GFF1216	0.78	+0.4
1,238,205	-		GFF1216	0.79	-0.2
1,238,212	+		GFF1216	0.81	-0.7
1,238,296	+				-1.4
1,238,310	+				+0.5
1,238,316	-				-0.8
1,238,325	+				+0.0
1,238,328	-				+0.6
1,238,347	+				-0.3
1,238,347	+				+0.1
1,238,355	-				+0.4
1,238,364	+				-0.9
1,238,372	-				-0.5
1,238,372	-				-1.1
1,238,375	+				-0.2
1,238,383	-				+0.8
1,238,385	-				+0.4
1,238,397	-				+0.3
1,238,403	-				-0.2
1,238,415	-				-1.1
1,238,417	-				-0.5
1,238,418	+				-0.2
1,238,419	-				-0.5
1,238,424	-				+0.8
1,238,443	+				+1.1
1,238,460	-				+0.2
1,238,460	-				-1.4
1,238,464	+				+0.9
1,238,466	-				-0.2
1,238,469	-				+1.8
1,238,470	-				-1.5
1,238,470	-				-0.7
1,238,479	-				+1.0
1,238,481	+				+0.5
1,238,481	+				-1.4
1,238,486	+				+0.7
1,238,486	+				+2.1
1,238,486	+				+1.1
1,238,486	+				-1.7
1,238,486	+				-1.0
1,238,486	+				+0.7
1,238,486	+				-1.0
1,238,486	+				+0.9
1,238,489	-				-2.0
1,238,494	-				-0.4
1,238,494	-				+0.3
1,238,494	-				+0.6
1,238,494	-				+0.4
1,238,494	-				+0.3
1,238,501	-				+1.1
1,238,502	-				-0.6
1,238,504	+				-0.4
1,238,504	+				-1.2
1,238,512	-				+0.9
1,238,513	+				+0.7
1,238,517	-				+0.1
1,238,536	+				-0.1
1,238,541	+				+0.2
1,238,541	+				+0.2
1,238,541	+				-0.4
1,238,541	+				-2.3
1,238,541	+				-0.8
1,238,546	+				+0.6
1,238,546	+				+1.6
1,238,549	-				+1.2
1,238,549	-				-0.2
1,238,549	-				+0.2
1,238,549	-				-1.8
1,238,551	+				-1.5
1,238,551	+				-1.3
1,238,551	+				-1.6
1,238,555	-				+0.3
1,238,559	+				-0.1
1,238,559	+				-0.3
1,238,559	-				+0.5
1,238,559	-				+0.4
1,238,559	-				-2.6
1,238,567	-				+0.4
1,238,575	-				+1.4
1,238,581	-				+0.5
1,238,595	+				+0.1
1,238,595	+				+0.1
1,238,600	+				+0.5
1,238,603	-				-1.8
1,238,604	-				-0.3
1,238,605	+				+0.8
1,238,605	+				-1.6
1,238,605	+				-0.5
1,238,613	-				+0.5
1,238,613	-				+0.7
1,238,613	-				+0.7
1,238,618	+				+0.5
1,238,620	-				+0.4
1,238,622	-				+2.5
1,238,643	-		GFF1217	0.10	-0.2
1,238,643	-		GFF1217	0.10	-0.2
1,238,651	+		GFF1217	0.10	-0.3
1,238,686	-		GFF1217	0.11	-1.8
1,238,692	-		GFF1217	0.12	-0.6
1,238,693	+		GFF1217	0.12	-1.1
1,238,693	+		GFF1217	0.12	+0.4
1,238,701	-		GFF1217	0.12	-0.4
1,238,720	+		GFF1217	0.12	-0.0
1,238,728	-		GFF1217	0.13	-1.6
1,238,733	-		GFF1217	0.13	+0.7
1,238,776	-		GFF1217	0.14	-1.3
1,238,776	-		GFF1217	0.14	-0.9
1,238,777	+		GFF1217	0.14	-0.5
1,238,792	-		GFF1217	0.15	+0.7
1,238,823	-		GFF1217	0.15	-0.5
1,238,823	-		GFF1217	0.15	-0.6
1,238,845	+		GFF1217	0.16	-1.5
1,238,845	-		GFF1217	0.16	+0.4
1,238,850	+		GFF1217	0.16	-0.7
1,238,857	+		GFF1217	0.17	+0.4
1,238,858	-		GFF1217	0.17	+1.2
1,238,858	-		GFF1217	0.17	+0.6
1,238,858	-		GFF1217	0.17	-0.3
1,238,858	-		GFF1217	0.17	-2.5
1,238,862	+		GFF1217	0.17	-0.9
1,238,867	+		GFF1217	0.17	+0.4
1,238,867	+		GFF1217	0.17	+1.1
1,238,867	+		GFF1217	0.17	+0.0
1,238,867	+		GFF1217	0.17	-1.8
1,238,870	-		GFF1217	0.17	+1.4
1,238,870	-		GFF1217	0.17	+0.1
1,238,875	-		GFF1217	0.17	+0.8
1,238,875	-		GFF1217	0.17	+0.9
1,238,879	+		GFF1217	0.17	+0.2
1,238,879	+		GFF1217	0.17	-2.9
1,238,915	+		GFF1217	0.18	-2.6
1,238,938	-		GFF1217	0.19	-1.3
1,238,952	+		GFF1217	0.19	-0.3
1,238,952	+		GFF1217	0.19	-0.2
1,238,952	+		GFF1217	0.19	-2.0
1,238,952	+		GFF1217	0.19	-0.7
1,238,952	+		GFF1217	0.19	+0.7
1,238,952	+		GFF1217	0.19	+0.6
1,238,952	+		GFF1217	0.19	+0.1
1,238,957	+		GFF1217	0.19	+0.5
1,238,957	+		GFF1217	0.19	-0.5
1,238,957	+		GFF1217	0.19	-0.3
1,238,957	+		GFF1217	0.19	-1.5
1,238,957	+		GFF1217	0.19	+1.5
1,238,960	-		GFF1217	0.20	-0.5
1,238,960	-		GFF1217	0.20	-0.6
1,238,960	-		GFF1217	0.20	-0.6
1,238,960	-		GFF1217	0.20	-1.7
1,238,960	-		GFF1217	0.20	-0.2
1,238,960	-		GFF1217	0.20	-1.0
1,238,960	-		GFF1217	0.20	-0.8
1,238,965	-		GFF1217	0.20	-0.4
1,238,965	-		GFF1217	0.20	+0.2
1,238,965	-		GFF1217	0.20	-0.7
1,238,977	-		GFF1217	0.20	-0.4
1,238,987	-		GFF1217	0.20	-1.3
1,238,996	+		GFF1217	0.21	-0.3
1,239,005	-		GFF1217	0.21	-2.0
1,239,012	-		GFF1217	0.21	-0.4
1,239,012	-		GFF1217	0.21	+0.0
1,239,037	+		GFF1217	0.22	+0.3
1,239,045	-		GFF1217	0.22	-1.3
1,239,045	-		GFF1217	0.22	-1.9
1,239,069	-		GFF1217	0.23	-2.1
1,239,156	+		GFF1217	0.25	+0.1
1,239,156	+		GFF1217	0.25	-0.3
1,239,156	+		GFF1217	0.25	-0.8
1,239,156	-		GFF1217	0.25	-1.6
1,239,164	-		GFF1217	0.26	-0.1
1,239,191	+		GFF1217	0.26	-0.0
1,239,232	+		GFF1217	0.28	+1.3
1,239,235	-		GFF1217	0.28	-2.2
1,239,239	-		GFF1217	0.28	+0.2
1,239,239	-		GFF1217	0.28	+0.0
1,239,240	-		GFF1217	0.28	-1.2
1,239,258	-		GFF1217	0.28	-0.1
1,239,270	-		GFF1217	0.29	+0.5
1,239,270	-		GFF1217	0.29	+0.0
1,239,282	+		GFF1217	0.29	+0.1
1,239,284	-		GFF1217	0.29	+1.3
1,239,284	-		GFF1217	0.29	+0.4
1,239,290	-		GFF1217	0.29	-0.4
1,239,294	-		GFF1217	0.29	-0.7