Strain Fitness in Sphingobium sp. HT1-2 around GFF1204

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,218,999	+		GFF1203	0.38	+0.6
1,219,007	-		GFF1203	0.39	+0.8
1,219,007	-		GFF1203	0.39	-1.6
1,219,012	-		GFF1203	0.39	-0.8
1,219,012	-		GFF1203	0.39	-0.8
1,219,014	-		GFF1203	0.39	-1.6
1,219,035	+		GFF1203	0.41	-1.1
1,219,038	-		GFF1203	0.41	+0.1
1,219,043	-		GFF1203	0.41	+1.2
1,219,048	+		GFF1203	0.41	-0.5
1,219,049	+		GFF1203	0.42	-0.8
1,219,056	-		GFF1203	0.42	+0.2
1,219,056	-		GFF1203	0.42	-0.0
1,219,071	-		GFF1203	0.43	+0.1
1,219,093	+		GFF1203	0.45	+0.5
1,219,093	-		GFF1203	0.45	-0.9
1,219,099	-		GFF1203	0.45	-0.4
1,219,101	-		GFF1203	0.45	+0.8
1,219,101	-		GFF1203	0.45	+1.3
1,219,130	+		GFF1203	0.47	+0.5
1,219,130	+		GFF1203	0.47	-0.1
1,219,130	+		GFF1203	0.47	-0.9
1,219,130	+		GFF1203	0.47	-1.3
1,219,130	+		GFF1203	0.47	-0.1
1,219,135	+		GFF1203	0.47	-0.0
1,219,138	-		GFF1203	0.48	-0.1
1,219,138	-		GFF1203	0.48	-0.4
1,219,138	-		GFF1203	0.48	-1.2
1,219,138	-		GFF1203	0.48	-1.6
1,219,138	-		GFF1203	0.48	-0.5
1,219,143	-		GFF1203	0.48	-0.5
1,219,159	-		GFF1203	0.49	+0.8
1,219,160	+		GFF1203	0.49	-1.5
1,219,160	-		GFF1203	0.49	+0.3
1,219,178	-		GFF1203	0.50	-1.4
1,219,185	+		GFF1203	0.51	-0.4
1,219,185	+		GFF1203	0.51	-1.7
1,219,214	-		GFF1203	0.53	-2.0
1,219,232	+		GFF1203	0.54	-0.4
1,219,233	+		GFF1203	0.54	-1.8
1,219,233	+		GFF1203	0.54	-1.4
1,219,236	-		GFF1203	0.54	-0.1
1,219,240	-		GFF1203	0.54	-0.2
1,219,254	+		GFF1203	0.55	+0.8
1,219,314	+		GFF1203	0.59	-1.0
1,219,314	+		GFF1203	0.59	+0.8
1,219,320	-		GFF1203	0.60	-0.9
1,219,322	-		GFF1203	0.60	-0.5
1,219,323	+		GFF1203	0.60	+0.9
1,219,333	+		GFF1203	0.61	+1.1
1,219,341	-		GFF1203	0.61	-1.5
1,219,344	+		GFF1203	0.61	-2.9
1,219,352	-		GFF1203	0.62	-2.3
1,219,362	-		GFF1203	0.63	-0.8
1,219,370	-		GFF1203	0.63	-0.8
1,219,378	-		GFF1203	0.64	+1.1
1,219,389	+		GFF1203	0.64	+0.7
1,219,411	+		GFF1203	0.66	-0.4
1,219,411	+		GFF1203	0.66	+0.8
1,219,411	+		GFF1203	0.66	+1.9
1,219,411	+		GFF1203	0.66	+1.8
1,219,411	+		GFF1203	0.66	-0.4
1,219,411	+		GFF1203	0.66	+0.5
1,219,411	+		GFF1203	0.66	-0.3
1,219,411	+		GFF1203	0.66	+0.0
1,219,419	-		GFF1203	0.66	-0.8
1,219,419	-		GFF1203	0.66	-0.1
1,219,425	+		GFF1203	0.67	-0.3
1,219,438	-		GFF1203	0.68	-2.1
1,219,464	+		GFF1203	0.69	-0.0
1,219,464	+		GFF1203	0.69	+0.6
1,219,472	-		GFF1203	0.70	-0.3
1,219,472	-		GFF1203	0.70	-0.0
1,219,472	-		GFF1203	0.70	-1.1
1,219,478	-		GFF1203	0.70	-2.4
1,219,478	-		GFF1203	0.70	-1.7
1,219,478	-		GFF1203	0.70	-0.3
1,219,479	-		GFF1203	0.70	-0.0
1,219,491	+		GFF1203	0.71	+1.0
1,219,491	+		GFF1203	0.71	+0.5
1,219,491	+		GFF1203	0.71	-1.2
1,219,491	+		GFF1203	0.71	-0.9
1,219,491	+		GFF1203	0.71	-0.1
1,219,491	+		GFF1203	0.71	-1.3
1,219,499	-		GFF1203	0.72	-0.9
1,219,499	-		GFF1203	0.72	+1.2
1,219,499	-		GFF1203	0.72	-2.3
1,219,499	-		GFF1203	0.72	-2.6
1,219,499	-		GFF1203	0.72	-0.0
1,219,499	-		GFF1203	0.72	-0.9
1,219,499	-		GFF1203	0.72	-0.5
1,219,508	-		GFF1203	0.72	+0.8
1,219,521	+		GFF1203	0.73	-0.5
1,219,521	+		GFF1203	0.73	+1.0
1,219,537	+		GFF1203	0.74	+0.1
1,219,537	+		GFF1203	0.74	+0.3
1,219,540	-		GFF1203	0.74	-0.4
1,219,542	+		GFF1203	0.75	+0.4
1,219,556	-		GFF1203	0.76	-1.2
1,219,561	+		GFF1203	0.76	+0.2
1,219,571	+		GFF1203	0.77	+0.4
1,219,571	+		GFF1203	0.77	-0.2
1,219,577	+		GFF1203	0.77	+0.6
1,219,579	-		GFF1203	0.77	-0.4
1,219,621	-		GFF1203	0.80	-0.1
1,219,625	-		GFF1203	0.80	+1.6
1,219,625	-		GFF1203	0.80	-2.1
1,219,627	+		GFF1203	0.80	-0.1
1,219,628	+		GFF1203	0.80	-0.7
1,219,635	-		GFF1203	0.81	-1.4
1,219,635	-		GFF1203	0.81	-2.6
1,219,635	-		GFF1203	0.81	+1.0
1,219,635	-		GFF1203	0.81	+0.6
1,219,640	+		GFF1203	0.81	-1.5
1,219,640	+		GFF1203	0.81	-0.4
1,219,648	-		GFF1203	0.82	-0.4
1,219,673	-		GFF1203	0.83	-1.8
1,219,697	+		GFF1203	0.85	-0.9
1,219,711	+		GFF1203	0.86	-0.1
1,219,711	+		GFF1203	0.86	+1.7
1,219,714	+		GFF1203	0.86	+0.4
1,219,794	+				-0.2
1,219,794	+				+0.5
1,219,794	+				+0.3
1,219,794	+				-0.8
1,219,797	-				+0.3
1,219,799	+				-0.0
1,219,799	+				+0.4
1,219,799	+				-0.6
1,219,799	+				-0.8
1,219,799	+				-1.7
1,219,802	-				-1.3
1,219,802	-				+0.3
1,219,802	-				-0.1
1,219,802	-				-1.1
1,219,802	-				-0.1
1,219,804	+				-1.9
1,219,804	+				-1.2
1,219,804	+				-0.4
1,219,807	-				+0.7
1,219,807	-				-0.1
1,219,807	-				-0.4
1,219,807	-				-1.4
1,219,807	-				+0.4
1,219,807	-				+0.5
1,219,807	-				+0.9
1,219,807	-				-2.0
1,219,812	-				+0.4
1,219,812	-				-1.1
1,219,812	-				-1.5
1,219,812	-				+0.1
1,219,812	-				-0.0
1,219,812	-				-1.6
1,219,812	-				-0.1
1,219,821	-				+0.0
1,219,845	+				+1.1
1,219,860	+				-0.5
1,219,860	+				-1.1
1,219,868	-				-2.2
1,219,945	-				+1.7
1,219,968	-				+0.1
1,219,975	+				-0.0
1,219,985	+				-0.5
1,220,020	+				+0.3
1,220,027	-				-1.3
1,220,028	-				-0.3
1,220,046	+				-0.4
1,220,050	+				-1.0
1,220,053	-				+0.1
1,220,054	-				-0.5
1,220,103	+		GFF1204	0.10	-0.6
1,220,111	-		GFF1204	0.11	-1.2
1,220,124	+		GFF1204	0.12	-0.6
1,220,132	-		GFF1204	0.13	-2.0
1,220,195	+		GFF1204	0.19	+1.3
1,220,198	-		GFF1204	0.19	-1.4
1,220,198	-		GFF1204	0.19	-0.5
1,220,201	+		GFF1204	0.19	-0.4
1,220,218	+		GFF1204	0.21	-2.2
1,220,218	+		GFF1204	0.21	-0.8
1,220,218	+		GFF1204	0.21	-1.0
1,220,226	-		GFF1204	0.21	+0.3
1,220,226	-		GFF1204	0.21	-0.2
1,220,226	-		GFF1204	0.21	-2.6
1,220,226	-		GFF1204	0.21	-1.7
1,220,235	+		GFF1204	0.22	-1.0
1,220,253	-		GFF1204	0.24	+1.2
1,220,315	-		GFF1204	0.30	-0.3
1,220,341	+		GFF1204	0.32	-1.9
1,220,341	+		GFF1204	0.32	+0.3
1,220,345	+		GFF1204	0.33	+1.0
1,220,345	+		GFF1204	0.33	-0.2
1,220,345	+		GFF1204	0.33	+1.1
1,220,345	+		GFF1204	0.33	+1.3
1,220,377	+		GFF1204	0.35	+0.9
1,220,377	+		GFF1204	0.35	+0.2
1,220,385	-		GFF1204	0.36	-0.8
1,220,385	-		GFF1204	0.36	-0.6
1,220,440	+		GFF1204	0.41	+0.2
1,220,443	-		GFF1204	0.42	-0.1
1,220,484	-		GFF1204	0.45	+0.5
1,220,500	+		GFF1204	0.47	+0.5
1,220,513	-		GFF1204	0.48	-0.4
1,220,513	-		GFF1204	0.48	+0.9
1,220,517	+		GFF1204	0.48	+0.4
1,220,525	-		GFF1204	0.49	+0.2
1,220,540	+		GFF1204	0.51	+1.0
1,220,589	-		GFF1204	0.55	-2.2
1,220,591	+		GFF1204	0.55	+0.4
1,220,591	+		GFF1204	0.55	-1.0
1,220,617	+		GFF1204	0.58	-1.3
1,220,644	+		GFF1204	0.60	+0.2
1,220,649	+		GFF1204	0.61	-1.4
1,220,684	+		GFF1204	0.64	+0.3
1,220,685	+		GFF1204	0.64	-0.9
1,220,686	-		GFF1204	0.64	-1.0
1,220,690	+		GFF1204	0.64	-0.4
1,220,690	-		GFF1204	0.64	+0.4
1,220,693	-		GFF1204	0.65	-1.5
1,220,695	+		GFF1204	0.65	+0.4
1,220,700	+		GFF1204	0.65	+0.1
1,220,708	-		GFF1204	0.66	-1.0
1,220,715	-		GFF1204	0.67	+0.5
1,220,747	+		GFF1204	0.70	+1.2
1,220,784	+		GFF1204	0.73	+0.6
1,220,854	+		GFF1204	0.80	-0.2
1,220,873	+		GFF1204	0.81	-0.0
1,220,883	-		GFF1204	0.82	-1.5
1,220,932	+		GFF1204	0.87	-1.9
1,220,932	+		GFF1204	0.87	-1.9
1,220,978	-				-1.9
1,220,979	+				+0.1
1,220,979	+				-0.9
1,220,980	+				+0.3
1,220,980	+				+1.2
1,220,980	+				-1.3
1,220,987	-				-0.6
1,220,987	-				-0.8
1,220,987	-				-1.0
1,220,987	-				+1.6
1,221,002	+				+0.2
1,221,002	+				+0.1
1,221,032	-				-0.1
1,221,085	+				+0.0
1,221,086	+				+1.1
1,221,086	+				+0.3
1,221,094	-				+0.3
1,221,176	-				+0.5
1,221,184	-				-0.0
1,221,235	-				-0.4
1,221,240	-				-0.7
1,221,277	+				-0.2
1,221,281	-				-0.5
1,221,291	-				-0.9
1,221,292	+				+1.4
1,221,313	+				+1.3
1,221,315	-				-0.9
1,221,333	-				-1.0
1,221,336	+		GFF1205	0.10	-0.5
1,221,342	+		GFF1205	0.10	-0.1
1,221,342	+		GFF1205	0.10	-1.3
1,221,350	-		GFF1205	0.11	-1.3
1,221,381	-		GFF1205	0.13	+0.9
1,221,384	+		GFF1205	0.13	-0.5
1,221,388	-		GFF1205	0.13	+2.2
1,221,408	-		GFF1205	0.15	-1.5
1,221,436	+		GFF1205	0.17	-0.0
1,221,436	+		GFF1205	0.17	-1.7
1,221,436	+		GFF1205	0.17	+0.4
1,221,436	+		GFF1205	0.17	-1.4
1,221,436	+		GFF1205	0.17	+0.1
1,221,436	+		GFF1205	0.17	+0.4
1,221,436	+		GFF1205	0.17	+0.2
1,221,436	+		GFF1205	0.17	-0.7
1,221,436	+		GFF1205	0.17	-0.4
1,221,444	-		GFF1205	0.17	-1.3
1,221,444	-		GFF1205	0.17	-0.3
1,221,444	-		GFF1205	0.17	+0.6
1,221,444	-		GFF1205	0.17	-0.4
1,221,444	-		GFF1205	0.17	-1.0
1,221,444	-		GFF1205	0.17	-2.4
1,221,444	-		GFF1205	0.17	-0.7
1,221,444	-		GFF1205	0.17	-0.7
1,221,463	+		GFF1205	0.18	-0.4
1,221,463	+		GFF1205	0.18	+0.3
1,221,463	+		GFF1205	0.18	-2.3
1,221,463	+		GFF1205	0.18	-0.3
1,221,463	+		GFF1205	0.18	-1.6
1,221,463	+		GFF1205	0.18	-3.0
1,221,463	+		GFF1205	0.18	-0.6
1,221,463	+		GFF1205	0.18	-0.4
1,221,463	+		GFF1205	0.18	-2.1
1,221,463	+		GFF1205	0.18	-0.3
1,221,463	+		GFF1205	0.18	-1.2
1,221,463	+		GFF1205	0.18	+0.3
1,221,463	+		GFF1205	0.18	+0.3
1,221,463	+		GFF1205	0.18	-3.0
1,221,463	+		GFF1205	0.18	+0.5
1,221,471	-		GFF1205	0.19	+0.2
1,221,471	-		GFF1205	0.19	-2.2
1,221,471	-		GFF1205	0.19	-1.2
1,221,471	-		GFF1205	0.19	-0.0
1,221,471	-		GFF1205	0.19	-1.3
1,221,471	-		GFF1205	0.19	+0.5
1,221,471	-		GFF1205	0.19	-1.0
1,221,471	-		GFF1205	0.19	+0.3
1,221,492	-		GFF1205	0.20	-2.3
1,221,494	-		GFF1205	0.20	+0.1
1,221,500	-		GFF1205	0.21	+1.6
1,221,500	-		GFF1205	0.21	-0.1
1,221,507	-		GFF1205	0.21	-0.2
1,221,507	-		GFF1205	0.21	-0.5
1,221,507	-		GFF1205	0.21	-0.8
1,221,510	+		GFF1205	0.21	-1.3
1,221,517	-		GFF1205	0.22	-1.7
1,221,518	-		GFF1205	0.22	+0.6
1,221,518	-		GFF1205	0.22	-0.5
1,221,525	-		GFF1205	0.22	+0.3
1,221,525	-		GFF1205	0.22	-1.7
1,221,525	-		GFF1205	0.22	-1.4
1,221,538	+		GFF1205	0.23	+0.2
1,221,538	+		GFF1205	0.23	+0.3
1,221,546	+		GFF1205	0.24	+1.4
1,221,546	+		GFF1205	0.24	+0.5
1,221,554	-		GFF1205	0.24	-1.1
1,221,554	-		GFF1205	0.24	+0.5
1,221,554	-		GFF1205	0.24	+0.3
1,221,554	-		GFF1205	0.24	-2.2
1,221,557	+		GFF1205	0.24	+0.2
1,221,564	-		GFF1205	0.25	+0.3
1,221,565	+		GFF1205	0.25	-1.9
1,221,565	-		GFF1205	0.25	-0.3
1,221,573	-		GFF1205	0.25	+0.1
1,221,599	+		GFF1205	0.27	+0.5
1,221,607	-		GFF1205	0.27	+1.2
1,221,617	+		GFF1205	0.28	-0.1
1,221,625	-		GFF1205	0.29	+0.2
1,221,625	-		GFF1205	0.29	-0.9
1,221,625	-		GFF1205	0.29	-3.2
1,221,635	-		GFF1205	0.29	-0.9
1,221,644	+		GFF1205	0.30	-1.2
1,221,649	+		GFF1205	0.30	-0.2
1,221,677	-		GFF1205	0.32	+0.9
1,221,677	-		GFF1205	0.32	+0.4
1,221,677	-		GFF1205	0.32	-0.2
1,221,701	-		GFF1205	0.34	+0.4
1,221,703	+		GFF1205	0.34	-0.3
1,221,703	+		GFF1205	0.34	-1.0
1,221,711	-		GFF1205	0.34	-1.5
1,221,725	+		GFF1205	0.35	+0.7
1,221,755	+		GFF1205	0.37	-0.5
1,221,758	-		GFF1205	0.37	+0.9
1,221,763	-		GFF1205	0.38	+0.2
1,221,763	-		GFF1205	0.38	-0.6
1,221,819	+		GFF1205	0.41	+0.3
1,221,825	-		GFF1205	0.41	+0.9
1,221,827	-		GFF1205	0.42	+1.1
1,221,834	+		GFF1205	0.42	+0.5
1,221,842	-		GFF1205	0.43	-2.7
1,221,842	-		GFF1205	0.43	+0.3
1,221,842	-		GFF1205	0.43	+0.3
1,221,844	+		GFF1205	0.43	-1.8
1,221,844	+		GFF1205	0.43	-1.8
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1,221,844	+		GFF1205	0.43	-0.4
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1,221,847	-		GFF1205	0.43	-0.0
1,221,852	-		GFF1205	0.43	-0.7
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1,221,852	-		GFF1205	0.43	-1.5
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1,221,854	+		GFF1205	0.43	-0.1
1,221,869	+		GFF1205	0.44	-0.9
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1,222,056	+		GFF1205	0.56	-0.1
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