Strain Fitness in Sphingobium sp. HT1-2 around GFF1186

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,192,520	+		GFF1185	0.38	-2.3
1,192,520	+		GFF1185	0.38	+0.3
1,192,525	+		GFF1185	0.38	-2.0
1,192,528	-		GFF1185	0.38	-0.3
1,192,528	-		GFF1185	0.38	-0.1
1,192,528	-		GFF1185	0.38	+1.5
1,192,533	-		GFF1185	0.39	-0.5
1,192,533	-		GFF1185	0.39	+0.9
1,192,533	-		GFF1185	0.39	+0.9
1,192,533	-		GFF1185	0.39	+0.8
1,192,535	+		GFF1185	0.39	-1.9
1,192,540	+		GFF1185	0.39	+0.5
1,192,545	+		GFF1185	0.40	-0.5
1,192,571	+		GFF1185	0.42	+0.8
1,192,594	+		GFF1185	0.43	+1.1
1,192,595	-		GFF1185	0.44	-1.2
1,192,602	-		GFF1185	0.44	-1.6
1,192,604	-		GFF1185	0.44	-0.6
1,192,627	+		GFF1185	0.46	-0.9
1,192,627	+		GFF1185	0.46	+0.0
1,192,627	+		GFF1185	0.46	-0.5
1,192,627	+		GFF1185	0.46	-0.5
1,192,627	+		GFF1185	0.46	+0.1
1,192,627	+		GFF1185	0.46	+0.1
1,192,635	-		GFF1185	0.47	+0.2
1,192,635	-		GFF1185	0.47	+0.0
1,192,635	-		GFF1185	0.47	+0.0
1,192,635	-		GFF1185	0.47	+0.2
1,192,635	-		GFF1185	0.47	-0.7
1,192,635	-		GFF1185	0.47	+1.1
1,192,635	-		GFF1185	0.47	-0.5
1,192,635	-		GFF1185	0.47	-0.9
1,192,635	-		GFF1185	0.47	-0.5
1,192,637	+		GFF1185	0.47	+1.1
1,192,702	-		GFF1185	0.52	+0.6
1,192,729	+		GFF1185	0.54	-0.3
1,192,729	+		GFF1185	0.54	-0.4
1,192,729	+		GFF1185	0.54	-0.7
1,192,737	-		GFF1185	0.55	-0.4
1,192,737	-		GFF1185	0.55	+0.1
1,192,737	-		GFF1185	0.55	-0.7
1,192,737	-		GFF1185	0.55	-0.1
1,192,737	-		GFF1185	0.55	-0.6
1,192,739	+		GFF1185	0.55	-0.2
1,192,740	+		GFF1185	0.55	-0.7
1,192,740	+		GFF1185	0.55	+0.3
1,192,740	+		GFF1185	0.55	-2.8
1,192,740	+		GFF1185	0.55	-1.8
1,192,740	+		GFF1185	0.55	-1.0
1,192,740	+		GFF1185	0.55	-0.0
1,192,740	+		GFF1185	0.55	+0.5
1,192,740	+		GFF1185	0.55	-0.6
1,192,740	+		GFF1185	0.55	-0.2
1,192,742	-		GFF1185	0.55	-1.3
1,192,745	+		GFF1185	0.56	-0.0
1,192,748	+		GFF1185	0.56	-1.5
1,192,748	-		GFF1185	0.56	+0.8
1,192,765	+		GFF1185	0.57	-2.8
1,192,765	+		GFF1185	0.57	+0.3
1,192,773	-		GFF1185	0.58	-0.3
1,192,773	-		GFF1185	0.58	+1.2
1,192,783	-		GFF1185	0.59	-0.5
1,192,783	-		GFF1185	0.59	-1.0
1,192,794	+		GFF1185	0.60	-0.5
1,192,794	+		GFF1185	0.60	-0.5
1,192,794	+		GFF1185	0.60	-0.6
1,192,794	+		GFF1185	0.60	-0.8
1,192,794	+		GFF1185	0.60	+1.0
1,192,794	+		GFF1185	0.60	-0.6
1,192,802	-		GFF1185	0.60	-2.0
1,192,802	-		GFF1185	0.60	+1.4
1,192,802	-		GFF1185	0.60	+0.1
1,192,802	-		GFF1185	0.60	-0.7
1,192,802	-		GFF1185	0.60	+0.8
1,192,802	-		GFF1185	0.60	+0.4
1,192,802	-		GFF1185	0.60	-0.1
1,192,810	+		GFF1185	0.61	+0.8
1,192,830	+		GFF1185	0.62	+0.6
1,192,837	+		GFF1185	0.63	-2.3
1,192,837	+		GFF1185	0.63	+0.2
1,192,837	+		GFF1185	0.63	+0.3
1,192,837	+		GFF1185	0.63	-1.3
1,192,845	-		GFF1185	0.64	-0.0
1,192,845	-		GFF1185	0.64	-1.0
1,192,845	-		GFF1185	0.64	+0.2
1,192,845	-		GFF1185	0.64	+0.7
1,192,845	-		GFF1185	0.64	-0.7
1,192,845	-		GFF1185	0.64	-0.7
1,192,845	-		GFF1185	0.64	+0.9
1,192,850	-		GFF1185	0.64	-1.9
1,192,850	-		GFF1185	0.64	-0.4
1,192,850	-		GFF1185	0.64	-0.4
1,192,863	-		GFF1185	0.65	+1.2
1,192,864	-		GFF1185	0.65	+0.6
1,192,875	-		GFF1185	0.66	-0.8
1,192,911	+		GFF1185	0.69	-2.7
1,192,911	+		GFF1185	0.69	-0.4
1,192,911	+		GFF1185	0.69	+0.7
1,192,911	+		GFF1185	0.69	+0.3
1,192,911	+		GFF1185	0.69	-1.3
1,192,911	+		GFF1185	0.69	-1.7
1,192,919	-		GFF1185	0.70	+0.1
1,192,919	-		GFF1185	0.70	-0.9
1,192,919	-		GFF1185	0.70	-1.3
1,192,919	-		GFF1185	0.70	+0.4
1,192,919	-		GFF1185	0.70	-0.1
1,192,919	-		GFF1185	0.70	-3.3
1,192,928	+		GFF1185	0.70	-0.0
1,192,928	+		GFF1185	0.70	-2.0
1,192,958	+		GFF1185	0.73	-1.3
1,192,968	+		GFF1185	0.73	+0.9
1,192,969	+		GFF1185	0.74	-0.8
1,192,969	+		GFF1185	0.74	+0.5
1,192,969	+		GFF1185	0.74	-0.6
1,192,969	+		GFF1185	0.74	+0.8
1,192,974	+		GFF1185	0.74	-1.2
1,192,977	-		GFF1185	0.74	-0.7
1,192,977	-		GFF1185	0.74	-0.5
1,192,977	-		GFF1185	0.74	-1.3
1,192,977	-		GFF1185	0.74	-1.3
1,192,977	-		GFF1185	0.74	-0.2
1,192,977	-		GFF1185	0.74	-1.1
1,192,977	-		GFF1185	0.74	-0.3
1,192,979	-		GFF1185	0.74	-2.7
1,193,017	-		GFF1185	0.77	+0.1
1,193,064	-		GFF1185	0.81	+0.3
1,193,078	+		GFF1185	0.82	+0.7
1,193,083	+		GFF1185	0.83	-0.2
1,193,094	+		GFF1185	0.84	-1.6
1,193,139	+		GFF1185	0.87	-2.4
1,193,139	+		GFF1185	0.87	-0.1
1,193,158	+		GFF1185	0.89	-0.4
1,193,163	+		GFF1185	0.89	-0.7
1,193,193	+				-1.2
1,193,201	-				-0.7
1,193,206	+				-1.3
1,193,231	+				-1.1
1,193,231	+				+0.6
1,193,239	-				-0.2
1,193,262	+				-0.1
1,193,268	+				+0.7
1,193,270	-				-0.5
1,193,270	-				+1.0
1,193,270	-				-0.2
1,193,298	-				-0.4
1,193,301	-				-0.4
1,193,309	-				+0.4
1,193,350	-				+0.2
1,193,350	-				-0.5
1,193,365	-				+0.8
1,193,365	-				+0.8
1,193,365	-				-2.2
1,193,418	-				-1.2
1,193,424	-				+0.6
1,193,425	+				-1.0
1,193,434	+				-0.5
1,193,453	+				-0.5
1,193,460	+				-1.0
1,193,460	+				-0.5
1,193,465	+				-1.9
1,193,465	+				-0.3
1,193,466	-				-0.4
1,193,468	-				+1.1
1,193,468	-				+0.4
1,193,473	-				-0.2
1,193,515	+				-0.8
1,193,528	+				-0.1
1,193,548	+				+0.8
1,193,548	+				+0.8
1,193,558	+				+0.1
1,193,566	-				+1.6
1,193,566	-				-1.3
1,193,566	-				+0.9
1,193,566	-				+0.5
1,193,571	-				-0.9
1,193,578	-				-0.6
1,193,604	+				-0.6
1,193,611	-				-0.8
1,193,631	-				-0.7
1,193,641	-		GFF1186	0.10	-0.6
1,193,761	+		GFF1186	0.20	+1.1
1,193,803	+		GFF1186	0.24	-0.0
1,193,807	+		GFF1186	0.24	-2.2
1,193,815	-		GFF1186	0.25	-0.9
1,193,815	-		GFF1186	0.25	+0.1
1,193,822	+		GFF1186	0.25	+0.3
1,193,823	+		GFF1186	0.25	-1.3
1,193,826	-		GFF1186	0.25	+0.7
1,193,831	-		GFF1186	0.26	+0.7
1,193,831	-		GFF1186	0.26	-0.6
1,193,858	+		GFF1186	0.28	-1.8
1,193,881	+		GFF1186	0.30	+1.5
1,193,881	+		GFF1186	0.30	+0.8
1,193,902	+		GFF1186	0.32	-0.2
1,193,910	-		GFF1186	0.32	-0.0
1,193,921	+		GFF1186	0.33	-1.4
1,193,921	+		GFF1186	0.33	+1.3
1,193,921	+		GFF1186	0.33	-1.5
1,193,921	+		GFF1186	0.33	-0.5
1,193,921	+		GFF1186	0.33	-0.9
1,193,921	+		GFF1186	0.33	+0.4
1,193,929	-		GFF1186	0.34	+0.6
1,193,929	-		GFF1186	0.34	-0.8
1,193,929	-		GFF1186	0.34	+0.2
1,193,929	-		GFF1186	0.34	-0.7
1,193,929	-		GFF1186	0.34	-0.2
1,193,939	+		GFF1186	0.35	+0.2
1,193,944	+		GFF1186	0.35	-0.5
1,193,944	+		GFF1186	0.35	-0.7
1,193,966	-		GFF1186	0.37	-0.3
1,193,971	-		GFF1186	0.37	+0.4
1,194,046	+		GFF1186	0.44	-0.4
1,194,055	-		GFF1186	0.44	-0.3
1,194,059	+		GFF1186	0.45	-1.3
1,194,059	+		GFF1186	0.45	-1.9
1,194,059	+		GFF1186	0.45	-1.5
1,194,059	+		GFF1186	0.45	+0.1
1,194,059	+		GFF1186	0.45	-0.1
1,194,059	+		GFF1186	0.45	+1.1
1,194,064	+		GFF1186	0.45	-0.2
1,194,067	-		GFF1186	0.45	+1.6
1,194,067	-		GFF1186	0.45	+0.6
1,194,067	-		GFF1186	0.45	-0.8
1,194,069	+		GFF1186	0.45	-0.2
1,194,069	+		GFF1186	0.45	+0.2
1,194,069	+		GFF1186	0.45	+1.3
1,194,072	-		GFF1186	0.46	+0.4
1,194,077	-		GFF1186	0.46	-0.2
1,194,077	-		GFF1186	0.46	+0.5
1,194,079	-		GFF1186	0.46	-0.1
1,194,081	+		GFF1186	0.46	-0.5
1,194,081	+		GFF1186	0.46	+0.7
1,194,081	+		GFF1186	0.46	-1.6
1,194,123	+		GFF1186	0.50	+0.8
1,194,133	+		GFF1186	0.51	-0.7
1,194,133	+		GFF1186	0.51	+1.4
1,194,133	+		GFF1186	0.51	+0.6
1,194,133	+		GFF1186	0.51	-0.0
1,194,133	+		GFF1186	0.51	+0.2
1,194,148	+		GFF1186	0.52	-1.5
1,194,165	+		GFF1186	0.53	+0.9
1,194,165	+		GFF1186	0.53	-0.8
1,194,165	+		GFF1186	0.53	+0.9
1,194,165	+		GFF1186	0.53	-0.4
1,194,165	+		GFF1186	0.53	-0.2
1,194,173	-		GFF1186	0.54	+0.8
1,194,173	-		GFF1186	0.54	+0.1
1,194,173	-		GFF1186	0.54	+0.2
1,194,223	-		GFF1186	0.58	+0.9
1,194,246	+		GFF1186	0.60	+0.5
1,194,246	+		GFF1186	0.60	+0.1
1,194,254	+		GFF1186	0.61	-0.4
1,194,267	+		GFF1186	0.62	+0.3
1,194,292	-		GFF1186	0.64	+0.7
1,194,311	-		GFF1186	0.65	+0.5
1,194,334	-		GFF1186	0.67	+1.8
1,194,334	-		GFF1186	0.67	-0.6
1,194,334	-		GFF1186	0.67	+1.2
1,194,343	+		GFF1186	0.68	+0.4
1,194,353	+		GFF1186	0.69	+0.3
1,194,398	-		GFF1186	0.73	-2.0
1,194,449	+		GFF1186	0.77	+0.5
1,194,452	-		GFF1186	0.77	-0.6
1,194,458	+		GFF1186	0.77	-0.0
1,194,461	+		GFF1186	0.78	-2.0
1,194,475	+		GFF1186	0.79	+0.8
1,194,476	+		GFF1186	0.79	-0.9
1,194,481	+		GFF1186	0.79	+0.4
1,194,500	+		GFF1186	0.81	-0.8
1,194,509	+		GFF1186	0.82	-0.3
1,194,521	+		GFF1186	0.83	-2.8
1,194,523	-		GFF1186	0.83	+1.1
1,194,529	-		GFF1186	0.83	+0.8
1,194,529	-		GFF1186	0.83	+1.0
1,194,535	+		GFF1186	0.84	-0.5
1,194,564	+		GFF1186	0.86	+1.5
1,194,565	+		GFF1186	0.86	-2.1
1,194,565	+		GFF1186	0.86	-0.3
1,194,565	+		GFF1186	0.86	-1.6
1,194,565	+		GFF1186	0.86	+0.3
1,194,573	-		GFF1186	0.87	+1.2
1,194,573	-		GFF1186	0.87	+0.4
1,194,573	-		GFF1186	0.87	-1.5
1,194,602	-		GFF1186	0.89	-1.8
1,194,604	+		GFF1186	0.89	-1.3
1,194,607	-		GFF1186	0.90	+0.4
1,194,612	-				-0.5
1,194,635	-				+1.7
1,194,639	+				+0.6
1,194,686	-				+1.3
1,194,709	-				-0.2
1,194,716	-				+0.2
1,194,720	-				-0.4
1,194,729	+				-0.0
1,194,729	+				-1.7
1,194,729	+				+1.1
1,194,737	-				-0.2
1,194,737	-				-1.0
1,194,761	+				+0.6
1,194,764	-				-1.2
1,194,788	+		GFF1187	0.10	-0.7
1,194,799	+		GFF1187	0.12	+0.5
1,194,815	-		GFF1187	0.15	+0.6
1,194,823	+		GFF1187	0.16	-0.3
1,194,823	+		GFF1187	0.16	-0.6
1,194,828	-		GFF1187	0.17	+0.3
1,194,831	-		GFF1187	0.18	-0.7
1,194,836	-		GFF1187	0.19	+0.1
1,194,845	-		GFF1187	0.20	-1.3
1,194,846	-		GFF1187	0.20	-0.7
1,194,847	+		GFF1187	0.20	+0.0
1,194,856	+		GFF1187	0.22	-1.8
1,194,889	-		GFF1187	0.28	-0.6
1,194,889	-		GFF1187	0.28	+0.2
1,194,889	-		GFF1187	0.28	+0.8
1,194,889	-		GFF1187	0.28	-0.9
1,194,889	-		GFF1187	0.28	+0.8
1,194,889	-		GFF1187	0.28	-0.8
1,194,920	+		GFF1187	0.33	-1.3
1,194,925	+		GFF1187	0.34	-1.6
1,194,933	-		GFF1187	0.35	-1.2
1,194,948	+		GFF1187	0.38	-0.0
1,194,956	+		GFF1187	0.39	+0.4
1,194,956	-		GFF1187	0.39	-0.1
1,194,981	+		GFF1187	0.43	-0.1
1,195,006	-		GFF1187	0.48	+1.6
1,195,007	+		GFF1187	0.48	-1.0
1,195,014	+		GFF1187	0.49	-1.9
1,195,027	-		GFF1187	0.51	+0.8
1,195,067	-		GFF1187	0.58	-1.5
1,195,067	-		GFF1187	0.58	+0.2
1,195,121	+		GFF1187	0.68	-0.1
1,195,121	-		GFF1187	0.68	-3.0
1,195,131	-		GFF1187	0.69	-1.8
1,195,143	+		GFF1187	0.71	+1.0
1,195,146	-		GFF1187	0.72	-1.7
1,195,148	+		GFF1187	0.72	-1.3
1,195,148	+		GFF1187	0.72	+1.1
1,195,148	+		GFF1187	0.72	-0.2
1,195,148	+		GFF1187	0.72	+0.2
1,195,156	-		GFF1187	0.74	-1.2
1,195,156	-		GFF1187	0.74	+0.1
1,195,156	-		GFF1187	0.74	-0.4
1,195,156	-		GFF1187	0.74	-0.1
1,195,157	+		GFF1187	0.74	-0.4
1,195,162	+		GFF1187	0.75	+1.2
1,195,211	+		GFF1187	0.83	+0.3
1,195,219	-		GFF1187	0.84	+0.6
1,195,246	+		GFF1187	0.89	-1.6
1,195,250	-		GFF1187	0.90	+1.1
1,195,255	-				+0.1
1,195,294	-				-1.1
1,195,296	-				-0.7
1,195,316	+				+0.3
1,195,324	-				+1.0
1,195,324	-				-1.6
1,195,324	-				+0.5
1,195,329	-				-0.2
1,195,335	-				-1.5
1,195,348	-				+0.2
1,195,353	+				+0.6
1,195,353	+				+1.8
1,195,380	-				-0.5
1,195,385	-				-0.4
1,195,385	-				-0.9
1,195,385	-				+1.1
1,195,419	+				+0.7
1,195,425	+				-1.1
1,195,440	+				-0.3
1,195,447	+				-0.4
1,195,455	+				-0.6
1,195,462	+				-1.2
1,195,462	-				-2.2
1,195,463	+				+0.7
1,195,463	-				-0.2
1,195,490	+				+1.0
1,195,490	+				-1.8
1,195,498	-				-0.7
1,195,500	+				+0.3
1,195,500	+				+0.4
1,195,505	+				-1.4
1,195,513	-				+0.5
1,195,523	-				+0.7
1,195,576	+				+1.8
1,195,584	-				+0.5
1,195,594	-				-2.0
1,195,664	-				-0.6
1,195,667	+				-1.1
1,195,672	+				+1.0
1,195,686	-		GFF1188	0.10	-0.4