Strain Fitness in Sphingobium sp. HT1-2 around GFF1090

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,091,757	-		GFF1087	0.61	-1.3
1,091,764	-		GFF1087	0.62	-0.8
1,091,771	+		GFF1087	0.64	+0.2
1,091,771	+		GFF1087	0.64	+0.5
1,091,771	+		GFF1087	0.64	-1.2
1,091,771	+		GFF1087	0.64	+0.3
1,091,779	-		GFF1087	0.65	-0.8
1,091,779	-		GFF1087	0.65	-1.7
1,091,793	+		GFF1087	0.68	-0.5
1,091,801	-		GFF1087	0.70	+0.2
1,091,801	-		GFF1087	0.70	-0.2
1,091,813	+		GFF1087	0.73	-1.7
1,091,819	+		GFF1087	0.74	+0.4
1,091,821	-		GFF1087	0.74	-0.0
1,091,824	+		GFF1087	0.75	+0.0
1,091,825	+		GFF1087	0.75	+0.9
1,091,827	-		GFF1087	0.76	-0.5
1,091,827	-		GFF1087	0.76	-0.6
1,091,827	-		GFF1087	0.76	+1.1
1,091,827	-		GFF1087	0.76	+0.8
1,091,831	-		GFF1087	0.76	+0.2
1,091,845	-		GFF1087	0.79	+0.3
1,091,849	+		GFF1087	0.80	+0.7
1,091,854	+		GFF1087	0.81	-2.0
1,091,854	+		GFF1087	0.81	+0.8
1,091,854	+		GFF1087	0.81	+1.0
1,091,854	+		GFF1087	0.81	-1.5
1,091,854	+		GFF1087	0.81	+1.0
1,091,854	+		GFF1087	0.81	-1.8
1,091,854	+		GFF1087	0.81	-0.1
1,091,854	+		GFF1087	0.81	+0.8
1,091,862	-		GFF1087	0.83	-1.4
1,091,862	-		GFF1087	0.83	-0.5
1,091,862	-		GFF1087	0.83	-0.7
1,091,862	-		GFF1087	0.83	+0.2
1,091,862	-		GFF1087	0.83	+0.7
1,091,862	-		GFF1087	0.83	+0.5
1,091,864	-		GFF1087	0.83	-1.2
1,091,864	-		GFF1087	0.83	-0.6
1,091,873	+		GFF1087	0.85	-1.5
1,091,873	+		GFF1087	0.85	+0.8
1,091,873	+		GFF1087	0.85	-0.3
1,091,904	+				+0.9
1,091,904	+				-1.1
1,091,904	-				+0.1
1,091,912	-				-1.2
1,091,912	-				-1.2
1,091,912	-				+0.4
1,091,920	+				-0.8
1,091,926	+				-0.3
1,091,928	-				+1.3
1,091,928	-				-0.1
1,091,928	-				-1.6
1,091,928	-				+0.7
1,091,929	+				-0.2
1,091,929	+				-2.5
1,091,931	+				-0.1
1,091,937	-				-0.3
1,091,939	+				+0.7
1,091,946	+				+0.3
1,091,946	+				+0.2
1,091,946	+				-1.8
1,091,946	+				-0.9
1,091,946	+				+0.1
1,091,946	+				+0.3
1,091,946	+				-1.7
1,091,946	+				-0.0
1,091,946	+				-0.3
1,091,946	+				-0.6
1,091,946	+				-0.3
1,091,946	+				-0.8
1,091,946	+				+0.9
1,091,946	+				+0.2
1,091,946	+				+0.6
1,091,946	+				+0.7
1,091,946	+				+2.2
1,091,951	+				-0.6
1,091,954	-				-0.2
1,091,954	-				-0.5
1,091,954	-				+0.3
1,091,954	-				+0.2
1,091,954	-				+0.1
1,091,954	-				+0.9
1,091,954	-				+0.9
1,091,954	-				+0.2
1,091,954	-				+0.4
1,091,954	-				-0.4
1,091,954	-				+0.1
1,091,954	-				+1.7
1,091,954	-				+0.2
1,091,954	-				-1.4
1,091,954	-				+1.6
1,091,954	-				+0.4
1,091,954	-				+0.1
1,091,954	-				-0.4
1,091,954	-				-0.3
1,091,956	+				+0.8
1,091,956	+				-0.6
1,091,956	+				-0.6
1,091,964	-				-2.3
1,091,964	-				+0.6
1,091,971	-				+0.7
1,091,981	+				-0.1
1,091,982	+				-0.1
1,091,990	-				-1.3
1,092,006	+				-0.9
1,092,010	+				+0.1
1,092,010	+				-1.3
1,092,010	+				+0.2
1,092,014	-				-0.1
1,092,014	-				+0.5
1,092,018	-				-0.5
1,092,018	-				-0.2
1,092,018	-				-1.0
1,092,018	-				-1.3
1,092,018	-				-1.3
1,092,020	+				-0.2
1,092,024	-				-2.3
1,092,028	-				-0.7
1,092,028	-				+0.2
1,092,042	+		GFF1088	0.13	-0.8
1,092,051	-		GFF1088	0.17	-0.7
1,092,107	+		GFF1088	0.41	+0.2
1,092,115	-		GFF1088	0.45	+0.1
1,092,122	-		GFF1088	0.48	-0.3
1,092,130	-		GFF1088	0.51	-1.7
1,092,132	+		GFF1088	0.52	+0.4
1,092,132	+		GFF1088	0.52	-0.2
1,092,137	+		GFF1088	0.54	+0.5
1,092,137	+		GFF1088	0.54	+1.2
1,092,137	+		GFF1088	0.54	+0.5
1,092,140	-		GFF1088	0.56	+0.1
1,092,140	-		GFF1088	0.56	-0.3
1,092,145	-		GFF1088	0.58	+0.3
1,092,154	+		GFF1088	0.62	-0.3
1,092,154	+		GFF1088	0.62	-0.2
1,092,154	+		GFF1088	0.62	+1.2
1,092,155	-		GFF1088	0.62	+0.2
1,092,162	-		GFF1088	0.65	-0.8
1,092,165	+		GFF1088	0.67	-0.5
1,092,165	+		GFF1088	0.67	-0.5
1,092,173	-		GFF1088	0.70	-0.8
1,092,181	-		GFF1088	0.74	-1.6
1,092,183	-		GFF1088	0.75	+0.9
1,092,184	+		GFF1088	0.75	+0.5
1,092,197	+		GFF1088	0.81	+0.5
1,092,197	+		GFF1088	0.81	-1.4
1,092,200	-		GFF1088	0.82	+0.5
1,092,205	-		GFF1088	0.84	-0.2
1,092,209	+		GFF1088	0.86	+0.1
1,092,217	-		GFF1088	0.89	-1.0
1,092,227	-				-0.4
1,092,228	+				-0.3
1,092,236	-				-0.7
1,092,236	-				+0.1
1,092,236	-				-0.0
1,092,247	+				-0.1
1,092,247	+				-0.2
1,092,254	+				-0.1
1,092,254	+				+0.2
1,092,255	-				-0.1
1,092,255	-				-0.2
1,092,272	-				-0.6
1,092,282	-				-0.6
1,092,321	+		GFF1089	0.18	-0.5
1,092,326	+		GFF1089	0.19	+0.5
1,092,326	+		GFF1089	0.19	-2.5
1,092,331	+		GFF1089	0.20	-0.6
1,092,338	+		GFF1089	0.22	-1.6
1,092,373	+		GFF1089	0.29	-0.9
1,092,373	+		GFF1089	0.29	-2.1
1,092,395	+		GFF1089	0.34	+0.4
1,092,400	+		GFF1089	0.35	-0.5
1,092,400	+		GFF1089	0.35	-0.3
1,092,403	-		GFF1089	0.36	+0.2
1,092,403	-		GFF1089	0.36	-0.5
1,092,408	-		GFF1089	0.37	-1.1
1,092,408	-		GFF1089	0.37	-0.1
1,092,419	+		GFF1089	0.39	+0.8
1,092,424	+		GFF1089	0.40	+0.6
1,092,424	+		GFF1089	0.40	+1.1
1,092,424	+		GFF1089	0.40	+0.9
1,092,424	+		GFF1089	0.40	+0.1
1,092,424	+		GFF1089	0.40	+0.5
1,092,424	+		GFF1089	0.40	-1.2
1,092,424	+		GFF1089	0.40	+0.2
1,092,466	+		GFF1089	0.50	-0.3
1,092,486	+		GFF1089	0.54	+0.8
1,092,524	+		GFF1089	0.62	+0.6
1,092,544	+		GFF1089	0.66	+1.6
1,092,554	+		GFF1089	0.69	-0.7
1,092,566	-		GFF1089	0.71	-0.7
1,092,572	+		GFF1089	0.73	-1.0
1,092,572	+		GFF1089	0.73	-0.1
1,092,572	+		GFF1089	0.73	+1.2
1,092,572	+		GFF1089	0.73	+0.0
1,092,580	-		GFF1089	0.74	-0.5
1,092,580	-		GFF1089	0.74	+0.1
1,092,585	-		GFF1089	0.75	-1.5
1,092,614	+		GFF1089	0.82	-0.2
1,092,619	+		GFF1089	0.83	+0.3
1,092,619	+		GFF1089	0.83	-0.2
1,092,622	-		GFF1089	0.83	+1.5
1,092,625	-		GFF1089	0.84	-0.1
1,092,632	-		GFF1089	0.85	-0.1
1,092,639	+		GFF1089	0.87	+0.0
1,092,650	-		GFF1089	0.89	-0.1
1,092,651	+		GFF1089	0.90	+0.4
1,092,664	-				+0.1
1,092,698	+				-0.5
1,092,698	+				-1.4
1,092,703	-				+0.8
1,092,706	+				-1.1
1,092,706	+				+0.5
1,092,714	-				-0.6
1,092,714	-				+0.1
1,092,714	-				-1.9
1,092,716	+				-0.8
1,092,729	-				+0.2
1,092,731	+				+0.0
1,092,739	-				-1.2
1,092,739	-				-1.3
1,092,744	+				-1.3
1,092,752	-				+0.3
1,092,752	-				-0.8
1,092,770	+				-0.5
1,092,770	+				-1.2
1,092,791	+				+0.5
1,092,794	-				+0.3
1,092,799	-				+0.6
1,092,801	+				+0.1
1,092,852	+				+0.5
1,092,870	+				-0.7
1,092,878	+				-0.8
1,092,878	+				-1.7
1,092,878	+				-0.2
1,092,878	+				-0.6
1,092,885	+				-0.7
1,092,886	-				-0.2
1,092,886	-				+0.2
1,092,886	-				-2.6
1,092,886	-				-0.3
1,092,886	-				-0.2
1,092,886	-				-0.6
1,092,886	-				-1.0
1,092,893	-				-1.1
1,092,895	+				-1.6
1,092,895	+				-0.1
1,092,895	+				-2.0
1,092,903	-				-0.6
1,092,903	-				+0.2
1,092,903	-				-1.3
1,092,903	-				+0.9
1,092,905	+				+0.5
1,092,905	+				-0.2
1,092,905	+				-0.5
1,092,905	+				+0.1
1,092,905	+				-1.3
1,092,913	-				-0.6
1,092,913	-				+0.7
1,092,913	-				-0.5
1,092,924	+				-1.7
1,092,940	-				-0.5
1,092,953	-				+0.1
1,092,957	+				+0.2
1,092,962	+				-0.8
1,092,962	+				-3.4
1,092,962	+				-0.8
1,092,962	+				+0.2
1,092,965	-		GFF1090	0.10	-1.1
1,092,970	-		GFF1090	0.10	-0.8
1,092,970	-		GFF1090	0.10	-0.2
1,092,972	-		GFF1090	0.10	+0.5
1,093,011	+		GFF1090	0.12	-0.6
1,093,037	+		GFF1090	0.14	-1.1
1,093,037	+		GFF1090	0.14	-0.1
1,093,045	-		GFF1090	0.14	+0.4
1,093,045	-		GFF1090	0.14	+1.1
1,093,045	-		GFF1090	0.14	+1.0
1,093,045	-		GFF1090	0.14	-2.3
1,093,047	-		GFF1090	0.14	-1.8
1,093,054	+		GFF1090	0.14	-2.3
1,093,089	-		GFF1090	0.16	+0.2
1,093,092	+		GFF1090	0.16	-0.6
1,093,112	+		GFF1090	0.17	-0.1
1,093,120	-		GFF1090	0.18	-2.2
1,093,120	-		GFF1090	0.18	+0.1
1,093,125	-		GFF1090	0.18	+0.1
1,093,149	-		GFF1090	0.19	-1.7
1,093,153	-		GFF1090	0.19	+0.4
1,093,175	+		GFF1090	0.20	-0.9
1,093,181	-		GFF1090	0.20	-0.6
1,093,196	+		GFF1090	0.21	-1.7
1,093,202	+		GFF1090	0.21	-1.3
1,093,205	-		GFF1090	0.22	-0.2
1,093,210	-		GFF1090	0.22	+0.1
1,093,219	+		GFF1090	0.22	-0.1
1,093,219	+		GFF1090	0.22	-0.3
1,093,219	+		GFF1090	0.22	+0.0
1,093,219	+		GFF1090	0.22	+0.7
1,093,219	+		GFF1090	0.22	-0.2
1,093,219	+		GFF1090	0.22	+0.4
1,093,219	+		GFF1090	0.22	-0.8
1,093,219	+		GFF1090	0.22	+0.1
1,093,219	+		GFF1090	0.22	-0.5
1,093,219	+		GFF1090	0.22	-2.5
1,093,219	+		GFF1090	0.22	+0.4
1,093,219	+		GFF1090	0.22	+0.2
1,093,219	+		GFF1090	0.22	+0.2
1,093,219	+		GFF1090	0.22	-0.3
1,093,224	+		GFF1090	0.23	+0.4
1,093,227	-		GFF1090	0.23	-1.7
1,093,227	-		GFF1090	0.23	-0.5
1,093,227	-		GFF1090	0.23	+0.2
1,093,227	-		GFF1090	0.23	-1.6
1,093,227	-		GFF1090	0.23	+0.4
1,093,227	-		GFF1090	0.23	-0.8
1,093,227	-		GFF1090	0.23	+0.2
1,093,227	-		GFF1090	0.23	+0.8
1,093,227	-		GFF1090	0.23	-0.7
1,093,227	-		GFF1090	0.23	+1.1
1,093,227	-		GFF1090	0.23	+0.3
1,093,227	-		GFF1090	0.23	+1.1
1,093,227	-		GFF1090	0.23	+1.2
1,093,227	-		GFF1090	0.23	+1.2
1,093,227	-		GFF1090	0.23	+0.3
1,093,227	-		GFF1090	0.23	-2.0
1,093,227	-		GFF1090	0.23	+0.4
1,093,227	-		GFF1090	0.23	+0.2
1,093,227	-		GFF1090	0.23	-0.3
1,093,227	-		GFF1090	0.23	-1.2
1,093,227	-		GFF1090	0.23	+0.1
1,093,234	+		GFF1090	0.23	+0.8
1,093,249	+		GFF1090	0.24	-2.0
1,093,249	+		GFF1090	0.24	-1.7
1,093,254	+		GFF1090	0.24	-1.4
1,093,254	+		GFF1090	0.24	+0.1
1,093,260	-		GFF1090	0.24	+0.3
1,093,262	-		GFF1090	0.24	-0.4
1,093,262	-		GFF1090	0.24	+0.8
1,093,262	-		GFF1090	0.24	-2.0
1,093,270	-		GFF1090	0.25	-1.2
1,093,283	+		GFF1090	0.25	-0.9
1,093,286	+		GFF1090	0.25	+0.2
1,093,286	+		GFF1090	0.25	+0.7
1,093,298	+		GFF1090	0.26	-0.2
1,093,298	+		GFF1090	0.26	+0.1
1,093,298	+		GFF1090	0.26	+1.4
1,093,298	+		GFF1090	0.26	-0.8
1,093,299	-		GFF1090	0.26	-0.7
1,093,306	-		GFF1090	0.26	+0.3
1,093,306	-		GFF1090	0.26	-1.2
1,093,306	-		GFF1090	0.26	-0.1
1,093,306	-		GFF1090	0.26	+0.5
1,093,309	-		GFF1090	0.27	+0.2
1,093,314	-		GFF1090	0.27	+0.3
1,093,314	-		GFF1090	0.27	-0.6
1,093,330	+		GFF1090	0.28	-0.3
1,093,333	-		GFF1090	0.28	-0.4
1,093,333	-		GFF1090	0.28	-1.7
1,093,338	+		GFF1090	0.28	+0.2
1,093,338	+		GFF1090	0.28	+1.0
1,093,339	+		GFF1090	0.28	+0.2
1,093,339	+		GFF1090	0.28	+0.7
1,093,339	+		GFF1090	0.28	-0.8
1,093,340	+		GFF1090	0.28	-0.1
1,093,346	-		GFF1090	0.28	-1.5
1,093,346	-		GFF1090	0.28	+0.9
1,093,346	-		GFF1090	0.28	+0.4
1,093,347	-		GFF1090	0.28	+0.2
1,093,347	-		GFF1090	0.28	+0.1
1,093,347	-		GFF1090	0.28	+0.8
1,093,352	-		GFF1090	0.29	+0.2
1,093,357	-		GFF1090	0.29	-1.9
1,093,374	-		GFF1090	0.30	+1.4
1,093,391	+		GFF1090	0.31	-1.1
1,093,391	-		GFF1090	0.31	+0.6
1,093,391	-		GFF1090	0.31	-1.3
1,093,410	+		GFF1090	0.31	-0.1
1,093,410	+		GFF1090	0.31	-0.2
1,093,418	-		GFF1090	0.32	+0.9
1,093,423	-		GFF1090	0.32	-0.2
1,093,424	-		GFF1090	0.32	-1.2
1,093,426	+		GFF1090	0.32	-0.2
1,093,431	+		GFF1090	0.32	+0.7
1,093,431	+		GFF1090	0.32	+0.1
1,093,431	+		GFF1090	0.32	-1.3
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1,093,483	-		GFF1090	0.35	-2.8
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1,093,544	+		GFF1090	0.38	+0.9
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1,093,633	-		GFF1090	0.42	-0.3
1,093,638	-		GFF1090	0.42	-1.0
1,093,688	-		GFF1090	0.45	-0.7
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1,093,698	-		GFF1090	0.45	+1.0
1,093,698	-		GFF1090	0.45	-2.6
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1,093,702	+		GFF1090	0.46	-1.5
1,093,707	+		GFF1090	0.46	-2.7
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1,093,827	-		GFF1090	0.52	-0.5
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1,093,855	+		GFF1090	0.53	-2.1
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1,093,863	-		GFF1090	0.53	-0.3
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1,094,029	-		GFF1090	0.61	-1.6
1,094,030	-		GFF1090	0.61	-1.1
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1,094,667	-				-0.6
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