Strain Fitness in Sphingobium sp. HT1-2 around GFF1083

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,087,637	+				+1.0
1,087,654	+				+0.7
1,087,662	-				+0.2
1,087,690	+				+1.6
1,087,742	-				+0.6
1,087,743	+				-1.3
1,087,756	+				+0.3
1,087,764	-				-1.7
1,087,774	-				-0.9
1,087,793	-				-1.3
1,087,793	-				-0.3
1,087,797	+				-1.8
1,087,819	-		GFF1082	0.11	+0.5
1,087,826	+		GFF1082	0.11	+0.0
1,087,834	-		GFF1082	0.12	-1.7
1,087,834	-		GFF1082	0.12	-0.6
1,087,834	-		GFF1082	0.12	-1.3
1,087,857	-		GFF1082	0.15	-1.6
1,087,872	+		GFF1082	0.16	-1.6
1,087,880	-		GFF1082	0.17	-1.1
1,087,882	+		GFF1082	0.18	+1.1
1,087,882	+		GFF1082	0.18	+1.6
1,087,882	+		GFF1082	0.18	+0.1
1,087,886	-		GFF1082	0.18	-0.8
1,087,890	-		GFF1082	0.18	+1.0
1,087,890	-		GFF1082	0.18	+1.1
1,087,890	-		GFF1082	0.18	+0.2
1,087,890	-		GFF1082	0.18	-0.1
1,087,890	-		GFF1082	0.18	-0.5
1,087,890	-		GFF1082	0.18	+1.5
1,087,890	-		GFF1082	0.18	-1.3
1,087,909	-		GFF1082	0.21	+0.2
1,087,913	+		GFF1082	0.21	-1.0
1,087,913	+		GFF1082	0.21	-1.2
1,087,921	-		GFF1082	0.22	-1.2
1,087,921	-		GFF1082	0.22	+1.9
1,087,944	+		GFF1082	0.24	-0.3
1,087,946	-		GFF1082	0.25	+1.0
1,087,952	+		GFF1082	0.25	-1.5
1,087,952	+		GFF1082	0.25	+1.7
1,087,952	+		GFF1082	0.25	-1.5
1,087,973	-		GFF1082	0.28	-0.3
1,087,975	-		GFF1082	0.28	-0.8
1,087,987	+		GFF1082	0.29	-0.8
1,087,988	-		GFF1082	0.29	-0.4
1,087,988	-		GFF1082	0.29	-0.5
1,087,988	-		GFF1082	0.29	-0.1
1,087,997	-		GFF1082	0.30	+0.8
1,088,013	+		GFF1082	0.32	-0.5
1,088,021	-		GFF1082	0.33	+0.8
1,088,023	+		GFF1082	0.33	-0.1
1,088,028	+		GFF1082	0.34	-0.1
1,088,028	+		GFF1082	0.34	-1.3
1,088,031	-		GFF1082	0.34	+0.5
1,088,031	-		GFF1082	0.34	-0.5
1,088,036	-		GFF1082	0.35	-1.8
1,088,036	-		GFF1082	0.35	+0.3
1,088,036	-		GFF1082	0.35	+0.4
1,088,055	+		GFF1082	0.37	-1.6
1,088,068	-		GFF1082	0.38	+0.4
1,088,072	-		GFF1082	0.39	-1.5
1,088,107	+		GFF1082	0.43	-0.3
1,088,107	+		GFF1082	0.43	-1.3
1,088,117	+		GFF1082	0.44	+0.1
1,088,140	-		GFF1082	0.46	+1.3
1,088,140	-		GFF1082	0.46	-0.2
1,088,140	-		GFF1082	0.46	+0.9
1,088,180	+		GFF1082	0.51	-2.5
1,088,188	-		GFF1082	0.52	-0.0
1,088,193	-		GFF1082	0.52	-0.7
1,088,205	+		GFF1082	0.53	+0.7
1,088,205	+		GFF1082	0.53	-1.7
1,088,205	+		GFF1082	0.53	-1.3
1,088,205	+		GFF1082	0.53	-0.6
1,088,205	+		GFF1082	0.53	-0.2
1,088,211	-		GFF1082	0.54	+0.4
1,088,213	-		GFF1082	0.54	-1.6
1,088,213	-		GFF1082	0.54	+0.5
1,088,213	-		GFF1082	0.54	-0.3
1,088,222	+		GFF1082	0.55	+0.2
1,088,222	+		GFF1082	0.55	+0.7
1,088,222	+		GFF1082	0.55	-0.5
1,088,222	+		GFF1082	0.55	+1.7
1,088,230	-		GFF1082	0.56	+0.1
1,088,230	-		GFF1082	0.56	-1.6
1,088,240	+		GFF1082	0.57	-0.3
1,088,270	+		GFF1082	0.61	+0.7
1,088,291	+		GFF1082	0.63	+0.5
1,088,296	-		GFF1082	0.64	+1.2
1,088,298	+		GFF1082	0.64	+0.9
1,088,298	+		GFF1082	0.64	-2.7
1,088,298	+		GFF1082	0.64	-0.1
1,088,306	-		GFF1082	0.65	-0.2
1,088,306	-		GFF1082	0.65	+0.0
1,088,308	+		GFF1082	0.65	+0.8
1,088,308	+		GFF1082	0.65	-0.2
1,088,316	-		GFF1082	0.66	-0.5
1,088,316	-		GFF1082	0.66	-1.1
1,088,316	-		GFF1082	0.66	+0.2
1,088,316	-		GFF1082	0.66	+1.0
1,088,316	-		GFF1082	0.66	-1.2
1,088,316	-		GFF1082	0.66	+0.1
1,088,317	-		GFF1082	0.66	-1.6
1,088,324	-		GFF1082	0.67	-0.1
1,088,355	+		GFF1082	0.70	-0.1
1,088,404	+		GFF1082	0.76	+1.1
1,088,404	+		GFF1082	0.76	+0.1
1,088,404	+		GFF1082	0.76	-0.2
1,088,404	+		GFF1082	0.76	-0.4
1,088,409	+		GFF1082	0.76	-0.6
1,088,409	+		GFF1082	0.76	+0.7
1,088,412	-		GFF1082	0.76	-1.3
1,088,412	-		GFF1082	0.76	+0.2
1,088,412	-		GFF1082	0.76	-0.7
1,088,412	-		GFF1082	0.76	+1.4
1,088,414	+		GFF1082	0.77	-1.8
1,088,415	+		GFF1082	0.77	+0.7
1,088,417	-		GFF1082	0.77	-0.4
1,088,417	-		GFF1082	0.77	+0.5
1,088,422	-		GFF1082	0.78	-1.7
1,088,422	-		GFF1082	0.78	-0.3
1,088,423	-		GFF1082	0.78	+0.2
1,088,423	-		GFF1082	0.78	-1.0
1,088,423	-		GFF1082	0.78	-0.6
1,088,449	+		GFF1082	0.81	-0.7
1,088,492	+		GFF1082	0.85	-0.6
1,088,492	-		GFF1082	0.85	+0.3
1,088,497	+		GFF1082	0.86	+1.0
1,088,497	+		GFF1082	0.86	-2.1
1,088,500	-		GFF1082	0.86	+0.9
1,088,500	-		GFF1082	0.86	+0.1
1,088,500	-		GFF1082	0.86	+1.1
1,088,514	-		GFF1082	0.88	+0.4
1,088,516	-		GFF1082	0.88	+0.9
1,088,532	+		GFF1082	0.90	-0.4
1,088,555	+				-0.4
1,088,555	+				-0.2
1,088,580	+				-1.2
1,088,580	+				+0.4
1,088,588	-				-0.8
1,088,593	-				-0.1
1,088,597	+				+0.3
1,088,597	-				-0.8
1,088,598	-				-2.3
1,088,605	-				-0.9
1,088,605	-				+0.7
1,088,606	+				-0.8
1,088,607	+				-0.8
1,088,611	+				+0.8
1,088,611	+				-0.1
1,088,632	+				+0.1
1,088,632	+				-1.2
1,088,632	+				-1.6
1,088,632	+				+1.0
1,088,632	+				+0.6
1,088,632	+				+0.9
1,088,632	+				-2.0
1,088,632	+				+1.0
1,088,640	-				+0.7
1,088,640	-				-1.0
1,088,640	-				+2.1
1,088,640	-				+0.2
1,088,640	-				-0.8
1,088,640	-				-0.6
1,088,651	+				+1.6
1,088,651	+				+0.7
1,088,651	+				-0.4
1,088,651	+				+0.1
1,088,656	+				+0.1
1,088,659	-				-0.8
1,088,702	+		GFF1083	0.10	-1.8
1,088,710	-		GFF1083	0.12	-1.5
1,088,724	+		GFF1083	0.13	-0.4
1,088,729	+		GFF1083	0.14	-0.4
1,088,732	-		GFF1083	0.14	-1.1
1,088,737	-		GFF1083	0.15	+0.4
1,088,747	+		GFF1083	0.16	-1.7
1,088,747	+		GFF1083	0.16	-0.4
1,088,747	+		GFF1083	0.16	-0.6
1,088,755	-		GFF1083	0.18	-0.0
1,088,755	-		GFF1083	0.18	-0.3
1,088,755	-		GFF1083	0.18	+0.8
1,088,755	-		GFF1083	0.18	-1.6
1,088,764	+		GFF1083	0.19	-0.7
1,088,764	+		GFF1083	0.19	+0.5
1,088,766	-		GFF1083	0.19	-0.4
1,088,770	+		GFF1083	0.20	-2.5
1,088,778	-		GFF1083	0.21	+1.4
1,088,780	+		GFF1083	0.21	+0.7
1,088,785	+		GFF1083	0.22	-0.1
1,088,788	-		GFF1083	0.22	+0.0
1,088,790	+		GFF1083	0.22	-0.8
1,088,792	+		GFF1083	0.22	+1.1
1,088,792	+		GFF1083	0.22	-0.6
1,088,793	-		GFF1083	0.23	+0.1
1,088,800	-		GFF1083	0.24	-1.6
1,088,800	-		GFF1083	0.24	-0.6
1,088,800	-		GFF1083	0.24	-1.3
1,088,815	+		GFF1083	0.25	-0.7
1,088,818	-		GFF1083	0.26	+0.4
1,088,833	+		GFF1083	0.28	+0.1
1,088,841	+		GFF1083	0.29	+0.7
1,088,848	+		GFF1083	0.30	-0.8
1,088,864	+		GFF1083	0.32	-0.3
1,088,877	-		GFF1083	0.34	+1.1
1,088,879	+		GFF1083	0.34	-0.0
1,088,887	-		GFF1083	0.35	-0.1
1,088,895	-		GFF1083	0.36	+0.5
1,088,903	+		GFF1083	0.37	+0.9
1,088,903	+		GFF1083	0.37	-0.1
1,088,904	-		GFF1083	0.37	+0.9
1,088,910	-		GFF1083	0.38	-0.9
1,088,911	-		GFF1083	0.38	-0.2
1,088,938	-		GFF1083	0.42	-0.7
1,088,938	-		GFF1083	0.42	+0.4
1,088,960	+		GFF1083	0.45	-0.4
1,088,970	+		GFF1083	0.46	-0.5
1,088,970	-		GFF1083	0.46	+0.1
1,088,970	-		GFF1083	0.46	-0.3
1,088,978	-		GFF1083	0.47	+0.1
1,089,010	+		GFF1083	0.51	+0.4
1,089,018	-		GFF1083	0.52	-0.8
1,089,020	+		GFF1083	0.53	-0.7
1,089,020	+		GFF1083	0.53	+0.9
1,089,025	+		GFF1083	0.53	-0.4
1,089,028	-		GFF1083	0.54	-0.6
1,089,028	-		GFF1083	0.54	+0.1
1,089,033	-		GFF1083	0.54	-0.5
1,089,033	-		GFF1083	0.54	-0.1
1,089,037	+		GFF1083	0.55	-0.0
1,089,042	+		GFF1083	0.56	+0.9
1,089,042	+		GFF1083	0.56	-0.1
1,089,042	-		GFF1083	0.56	+0.0
1,089,045	-		GFF1083	0.56	+0.0
1,089,065	+		GFF1083	0.59	+0.6
1,089,090	+		GFF1083	0.62	+0.0
1,089,112	-		GFF1083	0.65	-0.0
1,089,112	-		GFF1083	0.65	+0.1
1,089,114	+		GFF1083	0.65	+0.1
1,089,147	+		GFF1083	0.70	-1.2
1,089,154	-		GFF1083	0.71	+0.6
1,089,155	-		GFF1083	0.71	+1.0
1,089,170	-		GFF1083	0.73	-0.6
1,089,195	+		GFF1083	0.76	-0.0
1,089,195	+		GFF1083	0.76	-0.0
1,089,196	-		GFF1083	0.76	+0.0
1,089,200	+		GFF1083	0.77	-2.0
1,089,200	+		GFF1083	0.77	-0.3
1,089,200	+		GFF1083	0.77	-1.0
1,089,200	+		GFF1083	0.77	-0.2
1,089,200	+		GFF1083	0.77	+0.3
1,089,200	+		GFF1083	0.77	+0.4
1,089,200	+		GFF1083	0.77	+0.7
1,089,200	+		GFF1083	0.77	+1.2
1,089,200	+		GFF1083	0.77	+0.2
1,089,200	+		GFF1083	0.77	-0.5
1,089,200	+		GFF1083	0.77	+0.9
1,089,200	+		GFF1083	0.77	-0.4
1,089,200	+		GFF1083	0.77	+0.7
1,089,200	+		GFF1083	0.77	+0.9
1,089,200	+		GFF1083	0.77	+1.4
1,089,205	+		GFF1083	0.77	+0.9
1,089,205	+		GFF1083	0.77	+0.1
1,089,208	-		GFF1083	0.78	+0.6
1,089,208	-		GFF1083	0.78	+0.7
1,089,208	-		GFF1083	0.78	+0.7
1,089,208	-		GFF1083	0.78	-0.2
1,089,208	-		GFF1083	0.78	-1.3
1,089,208	-		GFF1083	0.78	-0.4
1,089,208	-		GFF1083	0.78	-1.5
1,089,208	-		GFF1083	0.78	+0.2
1,089,208	-		GFF1083	0.78	-0.3
1,089,208	-		GFF1083	0.78	+0.1
1,089,208	-		GFF1083	0.78	+0.3
1,089,208	-		GFF1083	0.78	-0.5
1,089,208	-		GFF1083	0.78	-1.8
1,089,208	-		GFF1083	0.78	-0.9
1,089,213	-		GFF1083	0.78	-0.2
1,089,213	-		GFF1083	0.78	+0.3
1,089,213	-		GFF1083	0.78	-0.8
1,089,213	-		GFF1083	0.78	+0.5
1,089,213	-		GFF1083	0.78	-2.8
1,089,213	-		GFF1083	0.78	-0.6
1,089,231	-		GFF1083	0.81	-1.8
1,089,242	+		GFF1083	0.82	+1.1
1,089,247	+		GFF1083	0.83	-0.2
1,089,250	-		GFF1083	0.83	+0.5
1,089,250	-		GFF1083	0.83	+0.0
1,089,250	-		GFF1083	0.83	-0.3
1,089,250	-		GFF1083	0.83	-0.2
1,089,258	-		GFF1083	0.84	-1.6
1,089,262	-		GFF1083	0.85	-1.6
1,089,270	-		GFF1083	0.86	-0.8
1,089,284	-		GFF1083	0.88	+0.2
1,089,286	+		GFF1083	0.88	-2.7
1,089,287	+		GFF1083	0.88	-0.3
1,089,294	-		GFF1083	0.89	+0.3
1,089,297	+		GFF1083	0.90	+0.9
1,089,297	+		GFF1083	0.90	-1.5
1,089,300	-				-0.2
1,089,305	-				-0.5
1,089,323	-				+0.2
1,089,325	-				-0.7
1,089,342	+				+0.1
1,089,358	+				+0.5
1,089,368	+				+0.1
1,089,393	+				+0.8
1,089,394	-				-1.0
1,089,404	+				-0.2
1,089,407	-				-1.0
1,089,417	-				-0.4
1,089,419	-				+0.0
1,089,424	-				+0.7
1,089,452	-				-0.1
1,089,488	+				-0.3
1,089,496	-				-0.8
1,089,618	+				+0.6
1,089,626	-				+0.2
1,089,627	-				-0.8
1,089,635	-				+2.2
1,089,730	+				-0.6
1,089,737	+				+0.4
1,089,745	-				+0.8
1,089,762	-				-0.8
1,089,771	-				+0.9
1,089,771	-				-0.7
1,089,777	+				-0.3
1,089,788	+				-0.9
1,089,796	-				+0.7
1,089,805	+				-0.6
1,089,805	+				-1.3
1,089,805	+				+0.9
1,089,805	+				-0.4
1,089,805	+				-0.9
1,089,805	+				-1.9
1,089,805	+				-0.1
1,089,805	+				-3.3
1,089,805	+				-0.1
1,089,805	+				+0.9
1,089,805	+				-0.3
1,089,813	-				+0.2
1,089,813	-				+0.1
1,089,813	-				-1.2
1,089,813	-				-1.0
1,089,813	-				+1.2
1,089,813	-				+0.5
1,089,813	-				+0.4
1,089,813	-				-0.3
1,089,819	+				-0.9
1,089,849	+				-3.0
1,089,849	+				-0.2
1,089,849	+				+0.0
1,089,849	+				+1.1
1,089,849	+				+0.3
1,089,854	+				-0.2
1,089,857	-				-0.6
1,089,857	-				-1.7
1,089,857	-				+0.1
1,089,865	-				-1.7
1,089,873	-				+0.4
1,089,875	+				-1.5
1,089,875	+				-0.9
1,089,875	+				-0.7
1,089,875	+				+0.8
1,089,875	+				+0.1
1,089,875	+				+0.1
1,089,875	+				+0.1
1,089,875	+				-0.8
1,089,875	+				+0.0
1,089,875	+				+0.1
1,089,875	+				+0.7
1,089,883	-				-1.8
1,089,883	-				-0.1
1,089,883	-				-0.5
1,089,883	-				-1.2
1,089,883	-				-0.2
1,089,889	+				-0.9
1,089,908	-		GFF1085	0.10	+0.4
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1,089,922	+		GFF1085	0.12	+1.8
1,089,922	+		GFF1085	0.12	+0.4
1,089,922	+		GFF1085	0.12	-0.4
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1,089,922	+		GFF1085	0.12	-2.2
1,089,922	+		GFF1085	0.12	+0.1
1,089,922	+		GFF1085	0.12	+0.8
1,089,922	+		GFF1085	0.12	+1.2
1,089,922	+		GFF1085	0.12	+1.0
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1,089,922	+		GFF1085	0.12	+0.1
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1,089,922	+		GFF1085	0.12	-1.6
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1,089,930	-		GFF1085	0.12	-0.3
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1,089,930	-		GFF1085	0.12	-0.2
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1,089,930	-		GFF1085	0.12	-0.6
1,089,930	-		GFF1085	0.12	+1.1
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1,089,930	-		GFF1085	0.12	-1.2
1,089,930	-		GFF1085	0.12	-1.1
1,089,930	-		GFF1085	0.12	-0.5
1,089,930	-		GFF1085	0.12	-1.2
1,089,931	-		GFF1085	0.12	-1.2
1,089,931	-		GFF1085	0.12	-1.3
1,089,931	-		GFF1085	0.12	+0.9
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1,089,931	-		GFF1085	0.12	-0.8
1,089,960	+		GFF1085	0.15	+0.8
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1,089,970	+		GFF1085	0.16	-1.3
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1,090,003	+		GFF1085	0.18	+0.5
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1,090,022	-		GFF1085	0.20	-0.9
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1,090,040	-		GFF1085	0.21	-1.0
1,090,067	-		GFF1085	0.24	-0.3
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1,090,089	+		GFF1085	0.26	-0.1
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1,090,127	-		GFF1085	0.29	-1.7
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1,090,150	+		GFF1085	0.31	+0.2
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1,090,240	-		GFF1085	0.38	-2.2
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1,090,251	-		GFF1085	0.39	-1.1
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1,090,258	-		GFF1085	0.40	-2.0
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1,090,279	+		GFF1085	0.41	-0.7
1,090,279	+		GFF1085	0.41	+0.8
1,090,285	-		GFF1085	0.42	-1.0
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1,090,285	-		GFF1085	0.42	-2.7
1,090,287	+		GFF1085	0.42	+1.2
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1,090,287	-		GFF1085	0.42	-0.5
1,090,287	-		GFF1085	0.42	-0.4
1,090,295	-		GFF1085	0.43	-0.6
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1,090,309	-		GFF1085	0.44	-1.8
1,090,309	-		GFF1085	0.44	-0.9
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1,090,364	+		GFF1085	0.48	-0.7
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1,090,372	-		GFF1085	0.49	-0.5
1,090,372	-		GFF1085	0.49	-2.0
1,090,372	-		GFF1085	0.49	-0.9