Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28770

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_28760 and OKFHMN_28765 are separated by 186 nucleotidesOKFHMN_28765 and OKFHMN_28770 overlap by 4 nucleotidesOKFHMN_28770 and paa are separated by 698 nucleotides OKFHMN_28760: OKFHMN_28760 - replication protein, at 5,514,871 to 5,515,293 _28760 OKFHMN_28765: OKFHMN_28765 - DNA-binding protein, at 5,515,480 to 5,516,061 _28765 OKFHMN_28770: OKFHMN_28770 - hypothetical protein, at 5,516,058 to 5,516,222 _28770 OKFHMN_28775: paa - outer membrane adhesin Paa, at 5,516,921 to 5,517,679 paa Position (kb) 5516 5517Strain fitness (log2 ratio) -1 0 1at 5515.170 kb on + strand, within OKFHMN_28760at 5515.731 kb on + strand, within OKFHMN_28765

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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5,515,170 + OKFHMN_28760 0.71 -0.7
5,515,731 + OKFHMN_28765 0.43 -0.3

Or see this region's nucleotide sequence